Wall clock time and date at job start Sun Mar 7 2021 00:05:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42894 * 1 3 3 Si 1.86298 * 109.47725 * 2 1 4 4 C 1.50705 * 109.47171 * 240.00020 * 2 1 3 5 5 C 1.38241 * 119.93588 * 300.00279 * 4 2 1 6 6 C 1.38192 * 120.06684 * 179.97438 * 5 4 2 7 7 C 1.38681 * 119.95650 * 0.02562 * 6 5 4 8 8 O 1.35916 * 120.05988 * 180.02562 * 7 6 5 9 9 C 1.42904 * 116.99822 * 359.97438 * 8 7 6 10 10 C 1.50697 * 109.46580 * 180.02562 * 9 8 7 11 11 O 1.21283 * 120.00643 * 0.02562 * 10 9 8 12 12 N 1.34778 * 119.99542 * 180.02562 * 10 9 8 13 13 C 1.46505 * 120.00144 * 179.97438 * 12 10 9 14 14 H 1.09006 * 112.84472 * 25.33895 * 13 12 10 15 15 C 1.53778 * 113.61341 * 156.52937 * 13 12 10 16 16 C 1.53780 * 87.07904 * 89.12219 * 15 13 12 17 17 H 1.08997 * 113.61240 * 270.79524 * 16 15 13 18 18 C 1.53002 * 113.61182 * 139.98255 * 16 15 13 19 19 N 1.46503 * 109.46599 * 174.99784 * 18 16 15 20 20 C 1.36878 * 126.39755 * 269.70942 * 19 18 16 21 21 C 1.34671 * 106.81839 * 179.84652 * 20 19 18 22 22 N 1.34123 * 108.01795 * 0.42345 * 21 20 19 23 23 C 1.30500 * 109.26087 * 359.73221 * 22 21 20 24 24 C 1.53774 * 113.61584 * 254.14133 * 13 12 10 25 25 C 1.38837 * 119.87776 * 0.02562 * 7 6 5 26 26 Br 1.89099 * 120.02940 * 180.02562 * 25 7 6 27 27 C 1.38192 * 119.93336 * 359.72106 * 25 7 6 28 28 H 0.96709 * 113.99337 * 300.00145 * 1 2 3 29 29 H 1.09004 * 109.47533 * 120.00158 * 2 1 3 30 30 H 1.48506 * 109.99834 * 300.00610 * 3 2 1 31 31 H 1.48502 * 110.00011 * 61.31874 * 3 2 1 32 32 H 1.07999 * 119.96876 * 359.97438 * 5 4 2 33 33 H 1.08002 * 120.02131 * 179.97438 * 6 5 4 34 34 H 1.09000 * 109.47466 * 300.00275 * 9 8 7 35 35 H 1.09007 * 109.46592 * 60.00618 * 9 8 7 36 36 H 0.97000 * 120.00243 * 0.02562 * 12 10 9 37 37 H 1.08999 * 113.61270 * 203.66955 * 15 13 12 38 38 H 1.08997 * 113.61632 * 334.56906 * 15 13 12 39 39 H 1.08997 * 109.47167 * 294.99463 * 18 16 15 40 40 H 1.08996 * 109.47702 * 55.00014 * 18 16 15 41 41 H 1.08010 * 126.59246 * 359.97438 * 20 19 18 42 42 H 1.08000 * 125.98896 * 180.11551 * 21 20 19 43 43 H 1.07995 * 125.65019 * 180.02562 * 23 22 21 44 44 H 1.08995 * 113.61847 * 25.43022 * 24 13 12 45 45 H 1.09005 * 113.61222 * 156.33585 * 24 13 12 46 46 H 1.07996 * 119.98351 * 180.29545 * 27 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 1.5965 -2.0339 -1.4480 6 6 2.0552 -2.6878 -2.5757 7 6 2.8527 -2.0156 -3.4897 8 8 3.3046 -2.6566 -4.5998 9 6 2.9198 -4.0233 -4.7616 10 6 3.5102 -4.5634 -6.0386 11 8 4.1936 -3.8486 -6.7407 12 7 3.2787 -5.8409 -6.4004 13 6 3.8522 -6.3660 -7.6421 14 1 4.7541 -5.8363 -7.9489 15 6 4.0031 -7.8963 -7.6520 16 6 2.5767 -7.9546 -8.2236 17 1 1.8014 -7.9998 -7.4589 18 6 2.3967 -9.0114 -9.3153 19 7 0.9868 -9.0713 -9.7091 20 6 0.0236 -9.8739 -9.1600 21 6 -1.1238 -9.6081 -9.8131 22 7 -0.8660 -8.6756 -10.7420 23 6 0.3962 -8.3492 -10.6856 24 6 2.8232 -6.5363 -8.7721 25 6 3.1886 -0.6868 -3.2687 26 35 4.2751 0.2342 -4.5125 27 6 2.7229 -0.0360 -2.1420 28 1 -0.3932 0.4418 0.7651 29 1 1.7924 -0.5139 0.8900 30 1 1.5615 2.4679 -1.2085 31 1 1.5881 2.4585 1.2242 32 1 0.9758 -2.5574 -0.7359 33 1 1.7935 -3.7220 -2.7446 34 1 3.2865 -4.6065 -3.9169 35 1 1.8328 -4.0918 -4.8059 36 1 2.7318 -6.4125 -5.8390 37 1 4.7656 -8.2554 -8.3433 38 1 4.0931 -8.3327 -6.6572 39 1 3.0047 -8.7472 -10.1805 40 1 2.7092 -9.9838 -8.9349 41 1 0.1574 -10.5825 -8.3559 42 1 -2.0823 -10.0690 -9.6254 43 1 0.8870 -7.6219 -11.3153 44 1 1.9612 -5.8755 -8.6810 45 1 3.2637 -6.5242 -9.7691 46 1 2.9797 0.9991 -1.9718 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14688108_6201210.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:05:33 Heat of formation + Delta-G solvation = 34.284941 kcal Electronic energy + Delta-G solvation = -30508.525129 eV Core-core repulsion = 26028.251348 eV Total energy + Delta-G solvation = -4480.273781 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 422.067 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.98168 -41.80828 -41.20884 -39.82328 -38.89235 -37.45187 -35.49826 -34.05600 -33.48357 -32.29721 -30.62550 -30.36034 -29.83396 -28.65841 -27.04428 -26.41611 -24.64072 -23.91526 -22.44981 -22.23425 -21.97457 -21.84699 -20.58981 -19.60312 -18.80058 -18.61020 -18.28658 -17.64377 -17.40132 -17.09654 -16.81729 -16.62588 -16.15368 -15.93464 -15.71664 -15.54407 -15.34273 -15.01209 -14.95775 -14.70889 -14.54152 -14.36829 -14.23712 -14.04973 -13.98244 -13.84205 -13.71674 -13.68871 -13.08282 -12.61345 -12.55039 -12.36481 -12.22443 -11.96881 -11.85880 -11.73861 -11.63537 -11.05244 -11.01171 -10.84564 -10.59690 -10.53249 -10.29722 -9.99701 -9.43195 -9.29722 -5.02848 -0.04303 0.04924 0.71533 1.12671 1.19223 1.23480 1.35821 1.53182 1.77478 1.90293 2.31372 2.31554 2.34394 3.05622 3.16659 3.18036 3.28082 3.41882 3.47612 3.56426 3.64437 3.66976 3.74849 3.79471 3.83752 3.84394 3.92426 3.95725 4.01107 4.18168 4.23778 4.28590 4.37356 4.39487 4.54101 4.55019 4.56223 4.66050 4.74854 4.75226 4.80587 4.83447 4.96764 5.25354 5.27970 5.31466 5.37931 5.83105 5.95180 6.19185 6.24187 6.33715 6.96716 7.19384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.536 6.536 2 C -0.068 4.068 3 Si 0.672 3.328 4 C -0.104 4.104 5 C -0.034 4.034 6 C -0.204 4.204 7 C 0.160 3.840 8 O -0.273 6.273 9 C 0.038 3.962 10 C 0.519 3.481 11 O -0.502 6.502 12 N -0.712 5.712 13 C 0.124 3.876 14 H 0.109 0.891 15 C -0.135 4.135 16 C -0.129 4.129 17 H 0.097 0.903 18 C 0.113 3.887 19 N -0.458 5.458 20 C -0.060 4.060 21 C -0.029 4.029 22 N -0.496 5.496 23 C 0.184 3.816 24 C -0.147 4.147 25 C -0.118 4.118 26 Br -0.023 7.023 27 C -0.047 4.047 28 H 0.382 0.618 29 H 0.080 0.920 30 H -0.251 1.251 31 H -0.256 1.256 32 H 0.136 0.864 33 H 0.139 0.861 34 H 0.098 0.902 35 H 0.097 0.903 36 H 0.402 0.598 37 H 0.103 0.897 38 H 0.080 0.920 39 H 0.097 0.903 40 H 0.094 0.906 41 H 0.172 0.828 42 H 0.168 0.832 43 H 0.202 0.798 44 H 0.075 0.925 45 H 0.096 0.904 46 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.753 -5.610 6.119 8.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.344 6.344 2 C -0.178 4.178 3 Si 0.572 3.428 4 C -0.106 4.106 5 C -0.052 4.052 6 C -0.224 4.224 7 C 0.112 3.888 8 O -0.185 6.185 9 C -0.041 4.041 10 C 0.304 3.696 11 O -0.375 6.375 12 N -0.366 5.366 13 C 0.019 3.981 14 H 0.127 0.873 15 C -0.174 4.174 16 C -0.148 4.148 17 H 0.115 0.885 18 C -0.009 4.009 19 N -0.140 5.140 20 C -0.192 4.192 21 C -0.177 4.177 22 N -0.214 5.214 23 C -0.099 4.099 24 C -0.186 4.186 25 C -0.198 4.198 26 Br 0.063 6.937 27 C -0.066 4.066 28 H 0.230 0.770 29 H 0.098 0.902 30 H -0.175 1.175 31 H -0.181 1.181 32 H 0.154 0.846 33 H 0.157 0.843 34 H 0.116 0.884 35 H 0.115 0.885 36 H 0.237 0.763 37 H 0.121 0.879 38 H 0.099 0.901 39 H 0.116 0.884 40 H 0.113 0.887 41 H 0.190 0.810 42 H 0.186 0.814 43 H 0.218 0.782 44 H 0.094 0.906 45 H 0.115 0.885 46 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 3.256 -3.774 3.900 6.329 hybrid contribution -1.289 -1.282 1.825 2.576 sum 1.967 -5.056 5.725 7.887 Atomic orbital electron populations 1.86577 1.17669 1.80176 1.49949 1.24651 0.84551 1.10792 0.97821 0.95142 0.91822 0.74867 0.80936 1.19130 1.00424 0.94546 0.96450 1.20914 0.95178 0.93410 0.95721 1.21258 1.03247 1.01286 0.96593 1.18606 0.93044 0.90786 0.86377 1.86275 1.69571 1.23704 1.38938 1.22526 1.01173 0.82858 0.97551 1.19959 0.81098 0.82028 0.86556 1.90816 1.36696 1.56873 1.53074 1.45457 1.54305 1.12093 1.24744 1.21783 0.97623 0.94572 0.84139 0.87302 1.23331 0.96350 0.95081 1.02594 1.23117 0.98325 0.95289 0.98101 0.88452 1.21961 0.79076 1.00960 0.98949 1.45581 1.09406 1.31119 1.27941 1.22743 0.89526 1.02164 1.04797 1.22357 0.98588 0.99970 0.96802 1.70324 1.13632 1.14970 1.22472 1.25015 0.89940 1.00319 0.94603 1.23591 1.00109 0.95822 0.99062 1.20931 1.06868 0.93220 0.98792 1.96808 1.65425 1.74737 1.56746 1.20775 0.95448 0.99347 0.91041 0.77017 0.90201 1.17477 1.18136 0.84590 0.84317 0.88391 0.88494 0.76327 0.87878 0.90110 0.88437 0.88726 0.81027 0.81424 0.78162 0.90583 0.88524 0.83964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -0.12 12.74 -35.23 -0.45 -0.57 16 2 C -0.07 0.06 2.81 36.01 0.10 0.16 16 3 Si 0.67 -0.68 29.78 -169.99 -5.06 -5.74 16 4 C -0.10 -0.06 5.42 -104.60 -0.57 -0.62 16 5 C -0.03 0.01 9.60 -39.60 -0.38 -0.37 16 6 C -0.20 0.12 9.04 -39.43 -0.36 -0.24 16 7 C 0.16 0.28 6.68 -39.20 -0.26 0.02 16 8 O -0.27 -0.65 9.01 -39.39 -0.35 -1.01 16 9 C 0.04 -0.06 5.22 36.00 0.19 0.12 16 10 C 0.52 0.19 7.91 -10.99 -0.09 0.10 16 11 O -0.50 -2.72 16.12 -14.36 -0.23 -2.95 16 12 N -0.71 2.13 5.26 -53.02 -0.28 1.85 16 13 C 0.12 -0.36 4.29 -67.12 -0.29 -0.64 16 14 H 0.11 -0.09 7.50 -51.93 -0.39 -0.48 16 15 C -0.13 0.72 7.38 -25.92 -0.19 0.53 16 16 C -0.13 0.61 3.85 -89.67 -0.35 0.27 16 17 H 0.10 -0.40 8.14 -51.93 -0.42 -0.82 16 18 C 0.11 -0.50 5.99 -4.04 -0.02 -0.52 16 19 N -0.46 0.48 2.75 -118.57 -0.33 0.16 16 20 C -0.06 0.01 11.58 -16.56 -0.19 -0.18 16 21 C -0.03 -0.06 11.87 -17.81 -0.21 -0.28 16 22 N -0.50 -2.09 11.25 -14.67 -0.16 -2.26 16 23 C 0.18 0.19 12.56 -90.37 -1.14 -0.94 16 24 C -0.15 0.47 7.45 -25.78 -0.19 0.28 16 25 C -0.12 -0.30 6.24 -39.38 -0.25 -0.54 16 26 Br -0.02 -0.08 33.16 -68.01 -2.26 -2.33 16 27 C -0.05 -0.06 8.40 -39.58 -0.33 -0.39 16 28 H 0.38 -1.38 8.74 45.56 0.40 -0.99 16 29 H 0.08 -0.23 7.96 -51.93 -0.41 -0.64 16 30 H -0.25 -0.59 7.11 56.52 0.40 -0.18 16 31 H -0.26 -0.20 7.11 56.52 0.40 0.20 16 32 H 0.14 -0.24 8.06 -52.49 -0.42 -0.66 16 33 H 0.14 -0.51 6.30 -52.49 -0.33 -0.84 16 34 H 0.10 -0.45 7.66 -51.93 -0.40 -0.85 16 35 H 0.10 -0.39 7.66 -51.93 -0.40 -0.79 16 36 H 0.40 -2.37 8.70 -40.82 -0.36 -2.73 16 37 H 0.10 -0.63 8.10 -51.93 -0.42 -1.05 16 38 H 0.08 -0.47 8.14 -51.93 -0.42 -0.89 16 39 H 0.10 -0.53 7.85 -51.93 -0.41 -0.94 16 40 H 0.09 -0.51 8.14 -51.93 -0.42 -0.93 16 41 H 0.17 -0.53 8.06 -52.48 -0.42 -0.95 16 42 H 0.17 0.08 8.06 -52.49 -0.42 -0.34 16 43 H 0.20 -0.36 8.06 -52.49 -0.42 -0.78 16 44 H 0.08 -0.10 8.14 -51.93 -0.42 -0.52 16 45 H 0.10 -0.38 7.90 -51.93 -0.41 -0.79 16 46 H 0.14 -0.02 4.87 -52.49 -0.26 -0.28 16 LS Contribution 408.65 15.07 6.16 6.16 Total: 0.00 -12.74 408.65 -13.45 -26.19 By element: Atomic # 1 Polarization: -10.28 SS G_CDS: -5.96 Total: -16.24 kcal Atomic # 6 Polarization: 1.28 SS G_CDS: -4.52 Total: -3.25 kcal Atomic # 7 Polarization: 0.51 SS G_CDS: -0.77 Total: -0.26 kcal Atomic # 8 Polarization: -3.49 SS G_CDS: -1.04 Total: -4.53 kcal Atomic # 14 Polarization: -0.68 SS G_CDS: -5.06 Total: -5.74 kcal Atomic # 35 Polarization: -0.08 SS G_CDS: -2.26 Total: -2.33 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -12.74 -13.45 -26.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688108_6201210.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.471 kcal (2) G-P(sol) polarization free energy of solvation -12.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.186 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds