Wall clock time and date at job start Sun Mar 7 2021 00:05:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42895 * 1 3 3 Si 1.86300 * 109.47177 * 2 1 4 4 C 1.50703 * 109.47459 * 239.99982 * 2 1 3 5 5 C 1.32773 * 124.70983 * 300.00067 * 4 2 1 6 6 C 1.44426 * 113.08310 * 179.97438 * 5 4 2 7 7 C 1.47190 * 123.46043 * 180.02562 * 6 5 4 8 8 O 1.21636 * 119.99967 * 359.97438 * 7 6 5 9 9 N 1.34776 * 119.99638 * 179.97438 * 7 6 5 10 10 C 1.46503 * 119.99504 * 180.02562 * 9 7 6 11 11 H 1.08994 * 112.85144 * 336.19616 * 10 9 7 12 12 C 1.53782 * 113.68970 * 107.46773 * 10 9 7 13 13 C 1.53777 * 87.08242 * 89.12607 * 12 10 9 14 14 H 1.09008 * 113.68692 * 270.86952 * 13 12 10 15 15 C 1.52998 * 113.61620 * 139.98394 * 13 12 10 16 16 N 1.46500 * 109.47471 * 87.49446 * 15 13 12 17 17 C 1.36883 * 126.40270 * 270.00215 * 16 15 13 18 18 C 1.34666 * 106.81734 * 180.02562 * 17 16 15 19 19 N 1.34126 * 108.02240 * 359.97438 * 18 17 16 20 20 C 1.30494 * 109.25549 * 0.02562 * 19 18 17 21 21 C 1.53775 * 87.08439 * 25.42906 * 13 12 10 22 22 C 1.36014 * 113.07799 * 0.26612 * 6 5 4 23 23 S 1.70451 * 110.81552 * 359.59059 * 22 6 5 24 24 H 0.96698 * 114.00388 * 299.99495 * 1 2 3 25 25 H 1.09004 * 109.47292 * 120.00392 * 2 1 3 26 26 H 1.48504 * 109.99873 * 300.00025 * 3 2 1 27 27 H 1.48492 * 110.00067 * 61.31832 * 3 2 1 28 28 H 1.07999 * 123.45725 * 0.02562 * 5 4 2 29 29 H 0.96998 * 120.00557 * 359.97438 * 9 7 6 30 30 H 1.09000 * 113.61441 * 334.56970 * 12 10 9 31 31 H 1.09007 * 113.61339 * 203.67200 * 12 10 9 32 32 H 1.09008 * 109.46958 * 327.49561 * 15 13 12 33 33 H 1.09002 * 109.47241 * 207.50391 * 15 13 12 34 34 H 1.08001 * 126.58630 * 0.05386 * 17 16 15 35 35 H 1.07999 * 125.98413 * 180.02562 * 18 17 16 36 36 H 1.08006 * 125.64795 * 180.26456 * 20 19 18 37 37 H 1.09009 * 113.60902 * 89.11631 * 21 13 12 38 38 H 1.08995 * 113.61489 * 219.93590 * 21 13 12 39 39 H 1.07997 * 124.59002 * 179.71111 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 -1.2305 5 6 1.6689 -1.9764 -1.5327 6 6 2.2773 -2.4005 -2.7720 7 6 2.1343 -3.7577 -3.3235 8 8 1.4762 -4.5897 -2.7284 9 7 2.7327 -4.0784 -4.4878 10 6 2.5900 -5.4291 -5.0369 11 1 2.3570 -6.1732 -4.2753 12 6 1.6733 -5.5013 -6.2695 13 6 2.9260 -5.2308 -7.1193 14 1 3.1244 -4.1713 -7.2822 15 6 2.9798 -6.0504 -8.4101 16 7 2.2748 -5.3321 -9.4746 17 6 0.9455 -5.4379 -9.7837 18 6 0.7195 -4.6096 -10.8211 19 7 1.8790 -4.0138 -11.1366 20 6 2.8151 -4.4418 -10.3344 21 6 3.7428 -5.8404 -5.9679 22 6 3.0001 -1.4184 -3.3746 23 16 2.9440 0.0209 -2.4633 24 1 -0.3934 0.4416 0.7650 25 1 1.7923 -0.5139 0.8900 26 1 1.5614 2.4679 -1.2085 27 1 1.5879 2.4585 1.2242 28 1 1.0621 -2.6224 -0.9156 29 1 3.2572 -3.4148 -4.9625 30 1 0.9352 -4.7003 -6.3122 31 1 1.2390 -6.4875 -6.4335 32 1 2.5031 -7.0171 -8.2468 33 1 4.0192 -6.2025 -8.7010 34 1 0.2178 -6.0649 -9.2900 35 1 -0.2293 -4.4521 -11.3124 36 1 3.8495 -4.1317 -10.3520 37 1 3.8743 -6.9195 -6.0495 38 1 4.6762 -5.3142 -5.7682 39 1 3.5353 -1.5344 -4.3054 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14688108_6894386.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:05:50 Heat of formation + Delta-G solvation = 63.996772 kcal Electronic energy + Delta-G solvation = -23451.263383 eV Core-core repulsion = 19875.468063 eV Total energy + Delta-G solvation = -3575.795319 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 320.098 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.95038 -41.45849 -39.87198 -38.63282 -37.22318 -35.43631 -33.97534 -31.85267 -30.38730 -28.95310 -27.00054 -26.98856 -25.94739 -24.09570 -22.24301 -22.08163 -21.83957 -20.59630 -20.45397 -18.84607 -18.57278 -18.38780 -18.08056 -17.05872 -16.68866 -16.28443 -16.04032 -15.92783 -15.74789 -15.13894 -14.99621 -14.84521 -14.63115 -14.26503 -14.19780 -14.04162 -13.92410 -13.81671 -13.69471 -13.61138 -12.96992 -12.75351 -12.55197 -12.40451 -12.04088 -11.86670 -11.58028 -10.94716 -10.82964 -10.69374 -10.48426 -10.20497 -9.97311 -9.51263 -9.39773 -5.18225 -0.38648 0.29576 0.66130 0.87315 1.14312 1.16250 1.48113 1.80752 1.80985 1.97047 2.31060 2.33935 3.12346 3.16906 3.22567 3.45189 3.53340 3.57787 3.78479 3.82754 3.84945 3.93126 3.95333 4.02616 4.22303 4.23305 4.30755 4.43868 4.44708 4.57415 4.64010 4.70084 4.73463 4.81404 4.85013 4.90848 5.04057 5.20534 5.34371 5.42955 5.86417 6.27123 6.30122 6.36396 7.14931 7.21471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.531 6.531 2 C -0.034 4.034 3 Si 0.647 3.353 4 C -0.198 4.198 5 C -0.054 4.054 6 C -0.156 4.156 7 C 0.583 3.417 8 O -0.529 6.529 9 N -0.710 5.710 10 C 0.123 3.877 11 H 0.109 0.891 12 C -0.146 4.146 13 C -0.129 4.129 14 H 0.097 0.903 15 C 0.113 3.887 16 N -0.457 5.457 17 C -0.053 4.053 18 C -0.031 4.031 19 N -0.495 5.495 20 C 0.178 3.822 21 C -0.136 4.136 22 C -0.208 4.208 23 S 0.209 5.791 24 H 0.384 0.616 25 H 0.088 0.912 26 H -0.234 1.234 27 H -0.237 1.237 28 H 0.156 0.844 29 H 0.399 0.601 30 H 0.074 0.926 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.172 0.828 35 H 0.168 0.832 36 H 0.202 0.798 37 H 0.102 0.898 38 H 0.080 0.920 39 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.748 0.223 2.602 6.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.339 6.339 2 C -0.146 4.146 3 Si 0.545 3.455 4 C -0.314 4.314 5 C -0.083 4.083 6 C -0.174 4.174 7 C 0.369 3.631 8 O -0.405 6.405 9 N -0.362 5.362 10 C 0.017 3.983 11 H 0.127 0.873 12 C -0.185 4.185 13 C -0.148 4.148 14 H 0.115 0.885 15 C -0.009 4.009 16 N -0.140 5.140 17 C -0.186 4.186 18 C -0.179 4.179 19 N -0.213 5.213 20 C -0.104 4.104 21 C -0.174 4.174 22 C -0.347 4.347 23 S 0.475 5.525 24 H 0.232 0.768 25 H 0.105 0.895 26 H -0.158 1.158 27 H -0.161 1.161 28 H 0.173 0.827 29 H 0.234 0.766 30 H 0.093 0.907 31 H 0.113 0.887 32 H 0.113 0.887 33 H 0.115 0.885 34 H 0.189 0.811 35 H 0.186 0.814 36 H 0.219 0.781 37 H 0.120 0.880 38 H 0.099 0.901 39 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 5.946 2.095 1.771 6.548 hybrid contribution -1.549 -1.883 0.963 2.622 sum 4.397 0.212 2.734 5.182 Atomic orbital electron populations 1.86613 1.17290 1.80045 1.49971 1.24034 0.84609 1.09965 0.96000 0.95396 0.91624 0.75220 0.83285 1.23546 1.08036 0.97893 1.01925 1.21007 0.97975 0.94589 0.94731 1.20169 1.04612 0.94611 0.98030 1.17603 0.78738 0.86629 0.80145 1.90825 1.39760 1.50290 1.59673 1.45481 1.53748 1.13425 1.23521 1.21773 0.96399 0.84737 0.95353 0.87319 1.23524 0.96628 1.03211 0.95117 1.23065 0.98331 1.00523 0.92924 0.88499 1.21964 0.98258 0.95358 0.85342 1.45577 1.08693 1.33494 1.26256 1.22741 0.85733 1.07110 1.03004 1.22349 0.97592 0.99209 0.98759 1.70309 0.99774 1.25721 1.25515 1.25012 1.00438 0.94146 0.90847 1.23341 0.97655 1.02455 0.93996 1.25786 1.04656 0.99027 1.05182 1.83069 1.46104 1.10838 1.12442 0.76785 0.89457 1.15800 1.16058 0.82680 0.76578 0.90700 0.88718 0.88664 0.88509 0.81080 0.81434 0.78111 0.87974 0.90122 0.81159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -0.47 12.82 -35.23 -0.45 -0.92 16 2 C -0.03 0.02 2.94 36.01 0.11 0.12 16 3 Si 0.65 -0.99 30.91 -169.99 -5.25 -6.24 16 4 C -0.20 -0.17 5.72 -36.18 -0.21 -0.37 16 5 C -0.05 -0.13 9.91 -39.02 -0.39 -0.51 16 6 C -0.16 -0.23 5.98 -104.63 -0.63 -0.85 16 7 C 0.58 1.48 7.79 -12.63 -0.10 1.38 16 8 O -0.53 -3.41 16.40 5.25 0.09 -3.33 16 9 N -0.71 0.69 5.24 -54.16 -0.28 0.41 16 10 C 0.12 -0.20 4.32 -67.11 -0.29 -0.49 16 11 H 0.11 0.02 7.46 -51.93 -0.39 -0.37 16 12 C -0.15 0.32 7.43 -25.92 -0.19 0.13 16 13 C -0.13 0.50 3.84 -89.81 -0.35 0.16 16 14 H 0.10 -0.32 8.14 -51.92 -0.42 -0.74 16 15 C 0.11 -0.43 5.99 -4.04 -0.02 -0.46 16 16 N -0.46 0.26 2.75 -118.57 -0.33 -0.07 16 17 C -0.05 -0.03 11.58 -16.56 -0.19 -0.22 16 18 C -0.03 -0.09 11.87 -17.81 -0.21 -0.30 16 19 N -0.50 -2.19 11.25 -14.67 -0.16 -2.35 16 20 C 0.18 0.19 12.56 -90.38 -1.14 -0.94 16 21 C -0.14 0.60 7.39 -25.92 -0.19 0.41 16 22 C -0.21 0.25 10.38 29.93 0.31 0.56 16 23 S 0.21 -0.23 20.18 -107.50 -2.17 -2.40 16 24 H 0.38 -1.28 8.74 45.56 0.40 -0.88 16 25 H 0.09 -0.20 7.96 -51.93 -0.41 -0.61 16 26 H -0.23 -0.30 7.11 56.52 0.40 0.10 16 27 H -0.24 0.00 7.11 56.52 0.40 0.40 16 28 H 0.16 0.48 8.06 -52.49 -0.42 0.06 16 29 H 0.40 -1.39 7.20 -40.82 -0.29 -1.69 16 30 H 0.07 -0.01 8.14 -51.93 -0.42 -0.43 16 31 H 0.09 -0.28 7.90 -51.92 -0.41 -0.69 16 32 H 0.10 -0.43 7.84 -51.92 -0.41 -0.84 16 33 H 0.10 -0.50 8.14 -51.93 -0.42 -0.93 16 34 H 0.17 -0.31 8.06 -52.49 -0.42 -0.73 16 35 H 0.17 0.19 8.06 -52.49 -0.42 -0.23 16 36 H 0.20 -0.45 8.06 -52.48 -0.42 -0.87 16 37 H 0.10 -0.55 8.10 -51.92 -0.42 -0.97 16 38 H 0.08 -0.39 8.14 -51.93 -0.42 -0.81 16 39 H 0.17 -0.74 7.01 -52.49 -0.37 -1.11 16 LS Contribution 348.48 15.07 5.25 5.25 Total: 0.00 -10.69 348.48 -11.68 -22.37 By element: Atomic # 1 Polarization: -6.45 SS G_CDS: -4.88 Total: -11.34 kcal Atomic # 6 Polarization: 2.10 SS G_CDS: -3.48 Total: -1.39 kcal Atomic # 7 Polarization: -1.23 SS G_CDS: -0.77 Total: -2.01 kcal Atomic # 8 Polarization: -3.88 SS G_CDS: -0.37 Total: -4.25 kcal Atomic # 14 Polarization: -0.99 SS G_CDS: -5.25 Total: -6.24 kcal Atomic # 16 Polarization: -0.23 SS G_CDS: -2.17 Total: -2.40 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -10.69 -11.68 -22.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688108_6894386.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.369 kcal (2) G-P(sol) polarization free energy of solvation -10.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.372 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds