Wall clock time and date at job start Sun Mar 7 2021 00:06:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86298 * 109.46997 * 2 1 4 4 C 1.50699 * 109.46830 * 240.00466 * 2 1 3 5 5 C 1.34241 * 126.50280 * 105.02060 * 4 2 1 6 6 N 1.36833 * 109.94223 * 179.97438 * 5 4 2 7 7 C 1.46493 * 125.06434 * 180.02562 * 6 5 4 8 8 C 1.50700 * 109.47142 * 264.97481 * 7 6 5 9 9 O 1.21282 * 119.99864 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00168 * 179.97438 * 8 7 6 11 11 C 1.46499 * 120.00008 * 179.97438 * 10 8 7 12 12 H 1.09003 * 112.85216 * 25.33150 * 11 10 8 13 13 C 1.53787 * 113.61414 * 156.52917 * 11 10 8 14 14 C 1.53780 * 87.07867 * 89.11667 * 13 11 10 15 15 H 1.09002 * 113.61406 * 270.79685 * 14 13 11 16 16 C 1.53001 * 113.61177 * 139.98004 * 14 13 11 17 17 N 1.46500 * 109.46830 * 174.99805 * 16 14 13 18 18 C 1.36883 * 126.39735 * 269.71176 * 17 16 14 19 19 C 1.34670 * 106.81733 * 179.84473 * 18 17 16 20 20 N 1.34134 * 108.01695 * 0.42565 * 19 18 17 21 21 C 1.30490 * 109.25855 * 359.72816 * 20 19 18 22 22 C 1.53782 * 113.61743 * 254.13639 * 11 10 8 23 23 C 1.37695 * 109.87186 * 359.97438 * 6 5 4 24 24 C 1.39078 * 133.50771 * 180.02562 * 23 6 5 25 25 C 1.37790 * 119.77625 * 179.97438 * 24 23 6 26 26 C 1.38792 * 120.66485 * 0.02562 * 25 24 23 27 27 C 1.36658 * 120.53247 * 359.97438 * 26 25 24 28 28 C 1.39596 * 119.76120 * 359.76106 * 27 26 25 29 29 H 0.96708 * 114.00246 * 59.99398 * 1 2 3 30 30 H 1.08991 * 109.47274 * 120.00272 * 2 1 3 31 31 H 1.48506 * 109.99834 * 60.00805 * 3 2 1 32 32 H 1.48502 * 110.00011 * 181.32069 * 3 2 1 33 33 H 1.08008 * 125.02882 * 359.96292 * 5 4 2 34 34 H 1.09005 * 109.47104 * 24.97377 * 7 6 5 35 35 H 1.08994 * 109.47401 * 144.97160 * 7 6 5 36 36 H 0.97000 * 119.99965 * 359.97438 * 10 8 7 37 37 H 1.09004 * 113.61054 * 203.66793 * 13 11 10 38 38 H 1.08998 * 113.61201 * 334.48076 * 13 11 10 39 39 H 1.09002 * 109.47335 * 294.99712 * 16 14 13 40 40 H 1.09001 * 109.46887 * 55.00094 * 16 14 13 41 41 H 1.08001 * 126.59339 * 359.97438 * 18 17 16 42 42 H 1.07996 * 125.99188 * 180.11860 * 19 18 17 43 43 H 1.07999 * 125.65007 * 179.97438 * 21 20 19 44 44 H 1.09000 * 113.61087 * 25.43116 * 22 11 10 45 45 H 1.08994 * 113.61849 * 156.33288 * 22 11 10 46 46 H 1.07997 * 120.11706 * 359.97438 * 24 23 6 47 47 H 1.08004 * 119.66891 * 179.97438 * 25 24 23 48 48 H 1.08001 * 119.73296 * 180.02562 * 26 25 24 49 49 H 1.07995 * 120.12184 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7103 -1.2305 5 6 2.4611 -0.1375 -2.3229 6 7 2.8034 -1.0988 -3.2345 7 6 3.4091 -0.8402 -4.5430 8 6 2.3301 -0.7840 -5.5936 9 8 1.1696 -0.9446 -5.2802 10 7 2.6548 -0.5551 -6.8815 11 6 1.6060 -0.5010 -7.9029 12 1 0.6338 -0.2212 -7.4970 13 6 2.0049 0.2998 -9.1538 14 6 2.5639 -1.0157 -9.7213 15 1 3.6066 -1.1959 -9.4597 16 6 2.2839 -1.2074 -11.2132 17 7 2.9540 -2.4223 -11.6835 18 6 4.2215 -2.5052 -12.1937 19 6 4.4361 -3.7999 -12.4957 20 7 3.3263 -4.4873 -12.1872 21 6 2.4344 -3.6687 -11.7002 22 6 1.5613 -1.7445 -8.8066 23 6 2.4949 -2.3456 -2.7381 24 6 2.6309 -3.6360 -3.2387 25 6 2.2178 -4.7107 -2.4818 26 6 1.6660 -4.5194 -1.2227 27 6 1.5231 -3.2601 -0.7114 28 6 1.9399 -2.1573 -1.4589 29 1 -0.3934 0.4418 -0.7650 30 1 1.7923 -0.5138 0.8899 31 1 1.5616 2.4678 1.2086 32 1 3.5346 1.7703 -0.0322 33 1 2.5969 0.9250 -2.4618 34 1 3.9399 0.1115 -4.5160 35 1 4.1093 -1.6400 -4.7838 36 1 3.5830 -0.4263 -7.1322 37 1 1.1539 0.6897 -9.7123 38 1 2.7683 1.0543 -8.9640 39 1 1.2095 -1.3002 -11.3723 40 1 2.6603 -0.3473 -11.7669 41 1 4.9167 -1.6894 -12.3264 42 1 5.3410 -4.2117 -12.9173 43 1 1.4445 -3.9426 -11.3663 44 1 1.9678 -2.6403 -8.3370 45 1 0.5894 -1.9126 -9.2704 46 1 3.0587 -3.7953 -4.2175 47 1 2.3238 -5.7120 -2.8724 48 1 1.3476 -5.3726 -0.6421 49 1 1.0932 -3.1189 0.2692 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14688108_9818708.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:06:03 Heat of formation + Delta-G solvation = 102.140059 kcal Electronic energy + Delta-G solvation = -32207.606948 eV Core-core repulsion = 27911.359969 eV Total energy + Delta-G solvation = -4296.246979 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 367.168 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -43.00931 -42.52215 -41.37981 -39.65693 -37.99707 -37.51218 -35.53368 -34.29764 -33.76937 -31.40639 -30.42215 -30.14038 -29.44516 -28.53690 -27.08326 -25.84852 -24.45098 -23.63425 -22.77119 -22.26508 -21.97111 -21.85576 -20.66361 -20.54940 -18.91000 -18.47309 -18.36577 -17.69990 -17.39367 -16.97922 -16.75840 -16.35468 -16.26904 -16.08909 -15.80541 -15.48592 -15.37722 -15.23484 -15.01636 -14.76987 -14.74976 -14.61076 -14.37972 -14.34511 -14.01057 -13.96361 -13.72868 -13.64766 -13.40989 -13.06805 -12.65454 -12.60355 -12.47701 -12.13144 -12.03219 -12.01125 -11.69524 -11.67139 -11.19534 -10.87055 -10.56349 -10.44618 -10.33529 -10.22829 -9.45743 -9.04736 -8.55316 -5.03615 0.25593 0.76913 1.10123 1.28359 1.34794 1.37155 1.65133 1.70462 1.74705 2.00676 2.01923 2.29040 3.02088 3.08914 3.13236 3.30680 3.39901 3.40484 3.50363 3.63020 3.73705 3.74171 3.76120 3.81084 3.83434 3.89231 3.93026 4.06163 4.14810 4.29732 4.33336 4.35035 4.35587 4.50765 4.52886 4.55631 4.62612 4.69527 4.70703 4.77075 4.77857 4.79960 4.88260 4.96810 5.23321 5.25376 5.28847 5.62805 5.78619 5.80674 5.84014 5.87898 6.06381 6.21537 6.26342 6.33711 6.76475 6.90397 7.16878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.542 6.542 2 C -0.029 4.029 3 Si 0.683 3.317 4 C -0.197 4.197 5 C 0.068 3.932 6 N -0.467 5.467 7 C 0.092 3.908 8 C 0.495 3.505 9 O -0.508 6.508 10 N -0.713 5.713 11 C 0.123 3.877 12 H 0.107 0.893 13 C -0.135 4.135 14 C -0.128 4.128 15 H 0.097 0.903 16 C 0.113 3.887 17 N -0.458 5.458 18 C -0.059 4.059 19 C -0.029 4.029 20 N -0.496 5.496 21 C 0.184 3.816 22 C -0.147 4.147 23 C 0.109 3.891 24 C -0.128 4.128 25 C -0.096 4.096 26 C -0.145 4.145 27 C -0.066 4.066 28 C -0.087 4.087 29 H 0.377 0.623 30 H 0.110 0.890 31 H -0.254 1.254 32 H -0.256 1.256 33 H 0.171 0.829 34 H 0.124 0.876 35 H 0.117 0.883 36 H 0.402 0.598 37 H 0.102 0.898 38 H 0.080 0.920 39 H 0.097 0.903 40 H 0.094 0.906 41 H 0.172 0.828 42 H 0.169 0.831 43 H 0.202 0.798 44 H 0.074 0.926 45 H 0.095 0.905 46 H 0.114 0.886 47 H 0.125 0.875 48 H 0.123 0.877 49 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.990 6.588 -4.533 8.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.347 6.347 2 C -0.141 4.141 3 Si 0.584 3.416 4 C -0.204 4.204 5 C -0.057 4.057 6 N -0.150 5.150 7 C -0.034 4.034 8 C 0.279 3.721 9 O -0.382 6.382 10 N -0.366 5.366 11 C 0.017 3.983 12 H 0.125 0.875 13 C -0.174 4.174 14 C -0.148 4.148 15 H 0.115 0.885 16 C -0.010 4.010 17 N -0.141 5.141 18 C -0.192 4.192 19 C -0.177 4.177 20 N -0.214 5.214 21 C -0.099 4.099 22 C -0.185 4.185 23 C 0.004 3.996 24 C -0.149 4.149 25 C -0.115 4.115 26 C -0.164 4.164 27 C -0.084 4.084 28 C -0.091 4.091 29 H 0.224 0.776 30 H 0.128 0.872 31 H -0.179 1.179 32 H -0.181 1.181 33 H 0.188 0.812 34 H 0.141 0.859 35 H 0.135 0.865 36 H 0.236 0.764 37 H 0.120 0.880 38 H 0.099 0.901 39 H 0.115 0.885 40 H 0.113 0.887 41 H 0.190 0.810 42 H 0.186 0.814 43 H 0.218 0.782 44 H 0.093 0.907 45 H 0.114 0.886 46 H 0.132 0.868 47 H 0.143 0.857 48 H 0.141 0.859 49 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 2.671 6.130 -3.649 7.618 hybrid contribution 0.780 0.312 -0.155 0.855 sum 3.451 6.442 -3.805 8.239 Atomic orbital electron populations 1.86494 1.17416 1.81819 1.48958 1.24333 0.84797 1.08751 0.96217 0.95274 0.80625 0.77840 0.87848 1.20653 1.09591 0.92384 0.97792 1.21502 1.01272 0.93755 0.89158 1.43182 1.53931 1.04659 1.13236 1.21569 0.94483 1.06019 0.81368 1.21029 0.90860 0.76910 0.83349 1.90822 1.19820 1.46747 1.80764 1.45622 1.10493 1.73808 1.06660 1.21780 0.92650 0.96591 0.87245 0.87495 1.23326 1.02182 0.96034 0.95819 1.23106 1.00617 0.97687 0.93342 0.88473 1.21960 0.98606 0.85779 0.94612 1.45581 1.12780 1.08994 1.46722 1.22742 0.88207 1.00466 1.07790 1.22364 0.98455 0.90484 1.06409 1.70327 1.01483 1.33004 1.16546 1.25009 1.00874 0.79749 1.04251 1.23576 0.99752 0.98164 0.97032 1.18161 1.01472 0.85821 0.94111 1.19948 1.05325 0.89286 1.00296 1.20835 0.98280 0.97976 0.94432 1.20677 1.02365 0.96956 0.96431 1.20312 0.97835 0.90957 0.99305 1.18950 1.03203 0.92830 0.94124 0.77559 0.87240 1.17877 1.18057 0.81210 0.85857 0.86486 0.76352 0.87966 0.90135 0.88463 0.88725 0.81024 0.81407 0.78186 0.90705 0.88627 0.86810 0.85700 0.85902 0.85951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -1.18 12.88 -35.23 -0.45 -1.63 16 2 C -0.03 -0.04 3.06 36.01 0.11 0.07 16 3 Si 0.68 -0.48 30.75 -169.99 -5.23 -5.71 16 4 C -0.20 -0.44 5.58 -102.71 -0.57 -1.01 16 5 C 0.07 0.02 9.89 -16.73 -0.17 -0.14 16 6 N -0.47 -0.38 2.27 -115.71 -0.26 -0.64 16 7 C 0.09 -0.28 6.48 -5.20 -0.03 -0.32 16 8 C 0.49 -0.54 7.90 -10.99 -0.09 -0.63 16 9 O -0.51 -1.99 16.04 5.56 0.09 -1.91 16 10 N -0.71 2.85 5.26 -53.01 -0.28 2.57 16 11 C 0.12 -0.44 4.30 -67.11 -0.29 -0.72 16 12 H 0.11 -0.15 7.50 -51.93 -0.39 -0.54 16 13 C -0.13 0.79 7.38 -25.92 -0.19 0.60 16 14 C -0.13 0.66 3.85 -89.67 -0.35 0.32 16 15 H 0.10 -0.44 8.14 -51.93 -0.42 -0.86 16 16 C 0.11 -0.53 5.99 -4.04 -0.02 -0.56 16 17 N -0.46 0.62 2.75 -118.58 -0.33 0.29 16 18 C -0.06 0.03 11.58 -16.56 -0.19 -0.16 16 19 C -0.03 -0.06 11.87 -17.81 -0.21 -0.27 16 20 N -0.50 -1.95 11.25 -14.67 -0.17 -2.11 16 21 C 0.18 0.14 12.56 -90.38 -1.14 -1.00 16 22 C -0.15 0.54 7.45 -25.78 -0.19 0.34 16 23 C 0.11 0.36 6.80 -83.99 -0.57 -0.21 16 24 C -0.13 -0.34 10.00 -39.43 -0.39 -0.73 16 25 C -0.10 -0.23 10.01 -39.54 -0.40 -0.63 16 26 C -0.15 -0.41 9.97 -39.95 -0.40 -0.81 16 27 C -0.07 -0.25 10.05 -39.65 -0.40 -0.65 16 28 C -0.09 -0.36 6.35 -105.13 -0.67 -1.03 16 29 H 0.38 -0.51 8.70 45.56 0.40 -0.11 16 30 H 0.11 0.21 7.96 -51.93 -0.41 -0.20 16 31 H -0.25 -0.66 7.11 56.52 0.40 -0.26 16 32 H -0.26 -0.34 7.11 56.52 0.40 0.06 16 33 H 0.17 -0.57 6.35 -52.48 -0.33 -0.90 16 34 H 0.12 -0.80 8.12 -51.93 -0.42 -1.22 16 35 H 0.12 -0.56 8.14 -51.93 -0.42 -0.98 16 36 H 0.40 -2.70 8.70 -40.82 -0.36 -3.06 16 37 H 0.10 -0.66 8.10 -51.93 -0.42 -1.08 16 38 H 0.08 -0.51 8.14 -51.93 -0.42 -0.93 16 39 H 0.10 -0.55 7.85 -51.93 -0.41 -0.96 16 40 H 0.09 -0.53 8.14 -51.93 -0.42 -0.96 16 41 H 0.17 -0.57 8.06 -52.49 -0.42 -0.99 16 42 H 0.17 0.04 8.06 -52.49 -0.42 -0.39 16 43 H 0.20 -0.41 8.06 -52.49 -0.42 -0.83 16 44 H 0.07 -0.12 8.14 -51.93 -0.42 -0.55 16 45 H 0.10 -0.40 7.90 -51.93 -0.41 -0.81 16 46 H 0.11 0.09 8.06 -52.49 -0.42 -0.33 16 47 H 0.13 0.04 8.06 -52.48 -0.42 -0.39 16 48 H 0.12 0.11 8.06 -52.49 -0.42 -0.31 16 49 H 0.12 0.36 8.06 -52.49 -0.42 -0.06 16 LS Contribution 414.79 15.07 6.25 6.25 Total: 0.00 -13.53 414.79 -13.56 -27.09 By element: Atomic # 1 Polarization: -9.64 SS G_CDS: -7.03 Total: -16.67 kcal Atomic # 6 Polarization: -1.37 SS G_CDS: -6.15 Total: -7.53 kcal Atomic # 7 Polarization: 1.14 SS G_CDS: -1.03 Total: 0.11 kcal Atomic # 8 Polarization: -3.17 SS G_CDS: -0.36 Total: -3.54 kcal Atomic # 14 Polarization: -0.48 SS G_CDS: -5.23 Total: -5.71 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -13.53 -13.56 -27.09 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688108_9818708.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.226 kcal (2) G-P(sol) polarization free energy of solvation -13.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds