Wall clock time and date at job start Sun Mar 7 2021 00:06:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.36765 * 125.79714 * 2 1 4 4 C 1.47265 * 126.94637 * 0.02562 * 3 2 1 5 5 O 1.21620 * 119.99756 * 359.97438 * 4 3 2 6 6 N 1.34778 * 120.00217 * 180.02562 * 4 3 2 7 7 C 1.46493 * 119.99954 * 180.02562 * 6 4 3 8 8 H 1.09002 * 112.85041 * 334.66670 * 7 6 4 9 9 C 1.53778 * 113.61438 * 105.86508 * 7 6 4 10 10 C 1.54048 * 86.98654 * 89.16129 * 9 7 6 11 11 H 1.09001 * 113.61144 * 270.88099 * 10 9 7 12 12 C 1.52997 * 113.69569 * 139.99290 * 10 9 7 13 13 N 1.46500 * 109.47628 * 87.46387 * 12 10 9 14 14 C 1.36881 * 126.39747 * 269.71513 * 13 12 10 15 15 C 1.34667 * 106.81530 * 179.83795 * 14 13 12 16 16 N 1.34127 * 108.02224 * 0.42259 * 15 14 13 17 17 C 1.30496 * 109.25584 * 359.73022 * 16 15 14 18 18 C 1.53773 * 87.07725 * 25.43201 * 10 9 7 19 19 C 1.46693 * 106.11106 * 179.76562 * 3 2 1 20 20 C 1.34481 * 106.33645 * 0.39232 * 19 3 2 21 21 C 1.50699 * 125.57544 * 179.86662 * 20 19 3 22 22 O 1.42907 * 109.46603 * 64.72102 * 21 20 19 23 23 Si 1.86298 * 109.47032 * 184.71405 * 21 20 19 24 24 N 1.34654 * 125.80525 * 180.02562 * 2 1 3 25 25 H 1.09007 * 109.46798 * 269.97283 * 1 2 3 26 26 H 1.08993 * 109.47291 * 29.97588 * 1 2 3 27 27 H 1.09002 * 109.46918 * 149.98283 * 1 2 3 28 28 H 0.97002 * 119.99758 * 359.97438 * 6 4 3 29 29 H 1.09010 * 113.61169 * 203.66530 * 9 7 6 30 30 H 1.08996 * 113.61612 * 334.56112 * 9 7 6 31 31 H 1.09004 * 109.47374 * 207.46820 * 12 10 9 32 32 H 1.09005 * 109.46955 * 327.46178 * 12 10 9 33 33 H 1.08000 * 126.58900 * 359.97438 * 14 13 12 34 34 H 1.08007 * 125.98666 * 180.18590 * 15 14 13 35 35 H 1.08001 * 125.65249 * 179.97438 * 17 16 15 36 36 H 1.09008 * 113.61204 * 220.02102 * 18 10 9 37 37 H 1.09004 * 113.61707 * 89.12429 * 18 10 9 38 38 H 1.08005 * 126.83226 * 180.25453 * 19 3 2 39 39 H 1.08996 * 109.47117 * 304.72015 * 21 20 19 40 40 H 0.96697 * 114.00527 * 59.99993 * 22 21 20 41 41 H 1.48506 * 109.99834 * 58.68765 * 23 21 20 42 42 H 1.48502 * 110.00011 * 180.02562 * 23 21 20 43 43 H 0.97007 * 124.84953 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3070 1.1093 0.0000 4 6 1.8701 2.5157 0.0005 5 8 0.6839 2.7839 0.0006 6 7 2.7849 3.5055 -0.0001 7 6 2.3502 4.9045 0.0010 8 1 1.3572 5.0395 -0.4276 9 6 2.5368 5.6064 1.3565 10 6 3.9480 5.9897 0.8719 11 1 4.7082 5.2454 1.1092 12 6 4.3661 7.4099 1.2579 13 7 4.9804 7.3937 2.5878 14 6 4.3337 7.5564 3.7832 15 6 5.2696 7.4685 4.7475 16 7 6.4567 7.2672 4.1566 17 6 6.2912 7.2212 2.8630 18 6 3.4011 5.8765 -0.5609 19 6 3.6882 0.6151 0.0058 20 6 3.6097 -0.7274 -0.0001 21 6 4.7821 -1.6742 -0.0002 22 8 5.5100 -1.5309 1.2212 23 14 4.1658 -3.4256 -0.1539 24 7 2.2948 -1.0921 -0.0005 25 1 -0.3633 -0.0005 1.0277 26 1 -0.3633 0.8901 -0.5134 27 1 -0.3633 -0.8899 -0.5141 28 1 3.7310 3.2915 -0.0005 29 1 1.8769 6.4622 1.4995 30 1 2.5358 4.9233 2.2058 31 1 5.0846 7.7876 0.5304 32 1 3.4884 8.0561 1.2709 33 1 3.2759 7.7212 3.9257 34 1 5.0954 7.5501 5.8103 35 1 7.0730 7.0707 2.1332 36 1 4.0975 5.4111 -1.2586 37 1 2.9772 6.8059 -0.9412 38 1 4.5890 1.2110 0.0112 39 1 5.4352 -1.4436 -0.8418 40 1 4.9898 -1.7210 2.0138 41 1 3.3800 -3.5795 -1.4046 42 1 5.3125 -4.3692 -0.1546 43 1 1.9735 -2.0074 -0.0013 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688108_9865296.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:06:05 Heat of formation + Delta-G solvation = 69.467784 kcal Electronic energy + Delta-G solvation = -25960.709431 eV Core-core repulsion = 22203.261717 eV Total energy + Delta-G solvation = -3757.447714 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.92669 -42.51836 -40.97675 -39.19654 -37.74340 -35.32874 -33.90543 -32.82126 -32.01225 -30.39717 -29.05152 -28.65765 -26.70845 -25.80321 -24.39908 -23.23072 -22.22402 -21.80003 -21.59237 -20.76122 -20.18159 -18.70936 -18.35404 -17.76441 -17.02529 -16.93973 -16.62927 -16.33374 -15.93817 -15.83328 -15.33712 -15.12656 -14.91890 -14.89560 -14.66993 -14.50809 -14.41798 -14.15958 -14.10400 -13.90683 -13.63385 -13.41553 -13.37293 -12.72381 -12.69421 -12.57657 -12.31180 -12.25896 -11.68221 -11.32252 -11.00768 -10.89921 -10.50881 -10.44844 -10.14349 -9.83875 -9.42364 -9.19077 -5.16770 0.66321 1.12414 1.18326 1.21574 1.49667 1.82597 1.95324 2.00378 2.25243 2.36479 2.48005 3.41019 3.41246 3.51540 3.68243 3.73396 3.82805 3.85537 3.91145 4.06273 4.06745 4.19258 4.20390 4.28541 4.42302 4.47579 4.54356 4.61097 4.70458 4.71337 4.74034 4.77089 4.81399 4.86335 4.99479 5.02780 5.03845 5.16654 5.27071 5.38452 5.62929 5.66711 5.82952 5.84858 6.34838 6.40132 6.60214 6.68444 7.18448 7.30931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.120 3.880 3 C -0.268 4.268 4 C 0.589 3.411 5 O -0.584 6.584 6 N -0.702 5.702 7 C 0.112 3.888 8 H 0.086 0.914 9 C -0.144 4.144 10 C -0.115 4.115 11 H 0.089 0.911 12 C 0.111 3.889 13 N -0.452 5.452 14 C -0.046 4.046 15 C -0.067 4.067 16 N -0.545 5.545 17 C 0.174 3.826 18 C -0.119 4.119 19 C -0.140 4.140 20 C -0.023 4.023 21 C -0.039 4.039 22 O -0.550 6.550 23 Si 0.766 3.234 24 N -0.533 5.533 25 H 0.087 0.913 26 H 0.081 0.919 27 H 0.090 0.910 28 H 0.409 0.591 29 H 0.103 0.897 30 H 0.050 0.950 31 H 0.118 0.882 32 H 0.110 0.890 33 H 0.194 0.806 34 H 0.170 0.830 35 H 0.228 0.772 36 H 0.086 0.914 37 H 0.119 0.881 38 H 0.154 0.846 39 H 0.123 0.877 40 H 0.396 0.604 41 H -0.276 1.276 42 H -0.290 1.290 43 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.116 -2.307 -3.061 4.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.000 4.000 3 C -0.277 4.277 4 C 0.380 3.620 5 O -0.466 6.466 6 N -0.352 5.352 7 C 0.006 3.994 8 H 0.104 0.896 9 C -0.183 4.183 10 C -0.134 4.134 11 H 0.108 0.892 12 C -0.010 4.010 13 N -0.133 5.133 14 C -0.180 4.180 15 C -0.214 4.214 16 N -0.265 5.265 17 C -0.109 4.109 18 C -0.157 4.157 19 C -0.164 4.164 20 C -0.131 4.131 21 C -0.150 4.150 22 O -0.357 6.357 23 Si 0.670 3.330 24 N -0.134 5.134 25 H 0.105 0.895 26 H 0.099 0.901 27 H 0.109 0.891 28 H 0.245 0.755 29 H 0.121 0.879 30 H 0.069 0.931 31 H 0.136 0.864 32 H 0.128 0.872 33 H 0.211 0.789 34 H 0.188 0.812 35 H 0.244 0.756 36 H 0.105 0.895 37 H 0.137 0.863 38 H 0.171 0.829 39 H 0.141 0.859 40 H 0.246 0.754 41 H -0.203 1.203 42 H -0.217 1.217 43 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -1.772 -2.911 -3.672 5.010 hybrid contribution -0.084 0.058 -0.415 0.427 sum -1.856 -2.853 -4.087 5.319 Atomic orbital electron populations 1.20624 0.85944 1.04592 1.04223 1.20578 0.94346 0.85565 0.99488 1.20194 0.94118 0.91804 1.21620 1.17601 0.85013 0.84945 0.74486 1.90722 1.18019 1.84946 1.52923 1.45378 1.09839 1.04979 1.74995 1.21853 0.99527 0.80331 0.97672 0.89570 1.23558 0.97021 1.00800 0.96924 1.22942 0.96831 0.96336 0.97327 0.89246 1.22223 1.00736 0.97729 0.80320 1.45747 1.07876 1.51858 1.07868 1.23065 1.00467 1.09794 0.84707 1.22602 0.88933 1.09246 1.00609 1.70236 1.28230 1.21223 1.06766 1.25498 0.86393 1.04830 0.94190 1.23277 0.97138 1.00010 0.95267 1.21942 0.95364 0.93313 1.05789 1.20679 0.84809 0.95597 1.12058 1.24621 0.92188 1.07467 0.90754 1.86521 1.40518 1.92924 1.15712 0.94316 0.81756 0.72371 0.84579 1.41674 1.05113 1.08810 1.57766 0.89483 0.90075 0.89097 0.75500 0.87859 0.93116 0.86409 0.87221 0.78863 0.81238 0.75602 0.89497 0.86321 0.82868 0.85949 0.75427 1.20300 1.21716 0.73103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.05 9.88 71.24 0.70 0.76 16 2 C 0.12 0.17 7.17 41.78 0.30 0.47 16 3 C -0.27 -1.17 6.29 -19.04 -0.12 -1.29 16 4 C 0.59 4.21 7.81 86.62 0.68 4.89 16 5 O -0.58 -7.88 14.43 -4.09 -0.06 -7.94 16 6 N -0.70 -0.56 5.26 -443.47 -2.33 -2.89 16 7 C 0.11 -0.18 4.30 45.52 0.20 0.02 16 8 H 0.09 0.22 7.50 -2.39 -0.02 0.21 16 9 C -0.14 0.48 7.45 31.21 0.23 0.71 16 10 C -0.12 0.85 3.85 -10.18 -0.04 0.81 16 11 H 0.09 -0.46 8.14 -2.39 -0.02 -0.48 16 12 C 0.11 -0.95 5.99 86.38 0.52 -0.43 16 13 N -0.45 0.48 2.75 -529.06 -1.46 -0.97 16 14 C -0.05 -0.07 11.58 83.09 0.96 0.89 16 15 C -0.07 -0.49 11.87 83.52 0.99 0.50 16 16 N -0.55 -5.78 11.25 -200.31 -2.25 -8.04 16 17 C 0.17 0.51 12.56 180.26 2.26 2.78 16 18 C -0.12 1.02 7.38 31.12 0.23 1.25 16 19 C -0.14 -0.12 10.45 23.62 0.25 0.12 16 20 C -0.02 0.04 6.09 40.98 0.25 0.29 16 21 C -0.04 0.15 2.98 71.24 0.21 0.37 16 22 O -0.55 1.39 12.88 -148.98 -1.92 -0.53 16 23 Si 0.77 -4.78 30.96 68.60 2.12 -2.65 16 24 N -0.53 1.87 5.41 -171.08 -0.93 0.95 16 25 H 0.09 -0.14 8.14 -2.38 -0.02 -0.16 16 26 H 0.08 0.39 6.46 -2.39 -0.02 0.37 16 27 H 0.09 -0.53 8.14 -2.39 -0.02 -0.55 16 28 H 0.41 -1.26 7.83 -92.71 -0.73 -1.98 16 29 H 0.10 -0.57 7.91 -2.38 -0.02 -0.59 16 30 H 0.05 0.10 8.14 -2.39 -0.02 0.08 16 31 H 0.12 -1.44 8.14 -2.39 -0.02 -1.45 16 32 H 0.11 -1.19 7.85 -2.38 -0.02 -1.21 16 33 H 0.19 -0.78 8.06 -2.91 -0.02 -0.80 16 34 H 0.17 0.78 8.06 -2.91 -0.02 0.75 16 35 H 0.23 -0.95 8.06 -2.91 -0.02 -0.97 16 36 H 0.09 -0.80 8.14 -2.38 -0.02 -0.82 16 37 H 0.12 -1.39 8.10 -2.38 -0.02 -1.41 16 38 H 0.15 -0.28 7.70 -2.91 -0.02 -0.30 16 39 H 0.12 -0.41 7.96 -2.39 -0.02 -0.43 16 40 H 0.40 -3.92 8.70 -74.06 -0.64 -4.57 16 41 H -0.28 0.53 7.11 99.48 0.71 1.24 16 42 H -0.29 -0.52 7.11 99.48 0.71 0.18 16 43 H 0.43 -4.03 6.72 -92.70 -0.62 -4.66 16 Total: 0.00 -27.40 362.57 -0.10 -27.49 By element: Atomic # 1 Polarization: -16.66 SS G_CDS: -0.90 Total: -17.56 kcal Atomic # 6 Polarization: 4.52 SS G_CDS: 7.62 Total: 12.15 kcal Atomic # 7 Polarization: -3.99 SS G_CDS: -6.97 Total: -10.95 kcal Atomic # 8 Polarization: -6.50 SS G_CDS: -1.98 Total: -8.47 kcal Atomic # 14 Polarization: -4.78 SS G_CDS: 2.12 Total: -2.65 kcal Total: -27.40 -0.10 -27.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688108_9865296.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.959 kcal (2) G-P(sol) polarization free energy of solvation -27.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds