Wall clock time and date at job start Sun Mar 7 2021 02:00:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86300 * 109.46755 * 2 1 4 4 H 1.48504 * 109.47276 * 60.00310 * 3 2 1 5 5 H 1.48504 * 109.47368 * 179.97438 * 3 2 1 6 6 H 1.48497 * 109.47498 * 300.00061 * 3 2 1 7 7 C 1.50697 * 109.47180 * 119.99845 * 2 1 3 8 8 C 1.38405 * 119.82769 * 65.00567 * 7 2 1 9 9 C 1.37887 * 120.16974 * 180.02562 * 8 7 2 10 10 C 1.39832 * 119.82824 * 359.97438 * 9 8 7 11 11 C 1.47207 * 120.16945 * 180.02562 * 10 9 8 12 12 C 1.34811 * 120.00011 * 180.02562 * 11 10 9 13 13 C 1.46434 * 119.99655 * 179.72202 * 12 11 10 14 14 O 1.21695 * 120.00301 * 355.32032 * 13 12 11 15 15 N 1.34778 * 119.99458 * 175.31277 * 13 12 11 16 16 C 1.46385 * 119.19253 * 184.97112 * 15 13 12 17 17 C 1.51388 * 108.29665 * 245.48828 * 16 15 13 18 18 S 1.80465 * 110.05121 * 300.96706 * 17 16 15 19 19 O 1.42094 * 110.10543 * 278.06420 * 18 17 16 20 20 O 1.42106 * 110.04488 * 142.78018 * 18 17 16 21 21 N 1.65056 * 107.46572 * 30.43797 * 18 17 16 22 22 C 1.47386 * 117.13835 * 179.72507 * 21 18 17 23 23 C 1.51100 * 112.71329 * 135.34803 * 22 21 18 24 24 C 1.51628 * 113.83556 * 41.46601 * 23 22 21 25 25 C 1.52731 * 110.89521 * 309.42110 * 24 23 22 26 26 C 1.44628 * 119.19997 * 5.24472 * 15 13 12 27 27 C 1.39834 * 119.66014 * 0.27446 * 10 9 8 28 28 C 1.37888 * 119.82739 * 359.45237 * 27 10 9 29 29 H 0.96700 * 113.99806 * 60.00348 * 1 2 3 30 30 H 1.08994 * 109.47487 * 240.00281 * 2 1 3 31 31 H 1.08002 * 119.91004 * 359.97438 * 8 7 2 32 32 H 1.07999 * 120.08335 * 179.97438 * 9 8 7 33 33 H 1.08007 * 119.99897 * 359.97438 * 11 10 9 34 34 H 1.07998 * 119.99819 * 359.97438 * 12 11 10 35 35 H 1.08994 * 109.86733 * 5.55854 * 16 15 13 36 36 H 1.09001 * 109.86097 * 126.59352 * 16 15 13 37 37 H 1.09001 * 109.59139 * 180.61804 * 17 16 15 38 38 H 1.09003 * 109.05495 * 60.97782 * 17 16 15 39 39 H 1.09005 * 108.83455 * 256.17812 * 22 21 18 40 40 H 1.08997 * 108.83376 * 14.51399 * 22 21 18 41 41 H 1.09006 * 108.60938 * 162.59518 * 23 22 21 42 42 H 1.08998 * 108.61329 * 280.33892 * 23 22 21 43 43 H 1.09006 * 109.10319 * 70.24136 * 24 23 22 44 44 H 1.08994 * 109.10554 * 189.33503 * 24 23 22 45 45 H 1.09004 * 110.05578 * 298.84112 * 25 24 23 46 46 H 1.09003 * 109.11495 * 178.53157 * 25 24 23 47 47 H 1.09010 * 107.12058 * 28.28398 * 26 15 13 48 48 H 1.07999 * 120.08633 * 179.70133 * 27 10 9 49 49 H 1.08000 * 119.91967 * 180.27454 * 28 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 1 1.5549 2.4565 1.2126 5 1 3.5349 1.7567 0.0006 6 1 1.5549 2.4566 -1.2124 7 6 1.9313 -0.7104 1.2305 8 6 1.6825 -2.0619 1.3949 9 6 2.1384 -2.7188 2.5183 10 6 2.8542 -2.0160 3.4924 11 6 3.3449 -2.7099 4.6944 12 6 4.0343 -2.0289 5.6317 13 6 4.5171 -2.7180 6.8302 14 8 4.2240 -3.8835 7.0217 15 7 5.2863 -2.0613 7.7211 16 6 5.8498 -2.7950 8.8555 17 6 5.2323 -2.2521 10.1266 18 16 5.5785 -0.4874 10.2779 19 8 6.8791 -0.2891 10.8150 20 8 4.4561 0.1832 10.8345 21 7 5.6864 0.1290 8.7506 22 6 5.9610 1.5717 8.6257 23 6 7.0100 1.8777 7.5821 24 6 6.8715 1.0567 6.3150 25 6 6.7522 -0.4309 6.6400 26 6 5.5299 -0.6477 7.5362 27 6 3.0971 -0.6496 3.3215 28 6 2.6395 -0.0080 2.1900 29 1 -0.3933 0.4417 -0.7651 30 1 1.7924 -0.5137 -0.8899 31 1 1.1291 -2.6031 0.6418 32 1 1.9431 -3.7733 2.6454 33 1 3.1520 -3.7645 4.8257 34 1 4.2268 -0.9744 5.5005 35 1 5.6255 -3.8571 8.7579 36 1 6.9288 -2.6455 8.8941 37 1 5.6462 -2.7774 10.9874 38 1 4.1540 -2.4079 10.0932 39 1 5.0370 2.0837 8.3566 40 1 6.3025 1.9496 9.5894 41 1 6.9433 2.9340 7.3213 42 1 7.9937 1.6903 8.0123 43 1 5.9848 1.3848 5.7724 44 1 7.7505 1.2142 5.6900 45 1 7.6486 -0.7736 7.1568 46 1 6.6281 -0.9901 5.7126 47 1 4.6699 -0.2408 7.0040 48 1 3.6450 -0.0990 4.0719 49 1 2.8301 1.0464 2.0544 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14725706_12360594.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:00:25 Heat of formation + Delta-G solvation = -75.928370 kcal Electronic energy + Delta-G solvation = -33861.776799 eV Core-core repulsion = 29383.244420 eV Total energy + Delta-G solvation = -4478.532379 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 380.141 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.90660 -40.66515 -39.64940 -38.05509 -37.89492 -37.30308 -36.80980 -35.37431 -33.88585 -33.41312 -32.31072 -31.43621 -31.05983 -27.47945 -26.05909 -25.46160 -24.96665 -24.16258 -23.17700 -21.92525 -21.51032 -20.75028 -19.22970 -19.15435 -18.86261 -18.60138 -17.85237 -17.67113 -17.18797 -16.98229 -16.73203 -16.52580 -16.22121 -15.98926 -15.83091 -15.56120 -15.46683 -15.25206 -15.12262 -14.86726 -14.58513 -14.52177 -14.47972 -14.28983 -14.07395 -14.02488 -13.67729 -13.39222 -13.21014 -13.13487 -13.07277 -12.99238 -12.58383 -12.41190 -12.31207 -12.17678 -12.10291 -12.03985 -11.80214 -11.74486 -11.66617 -11.42976 -11.21801 -10.66637 -10.46242 -10.08593 -9.95263 -9.38105 -0.99656 -0.70315 0.28358 0.73125 1.01848 1.12744 1.32809 1.38858 1.56126 1.79013 1.99045 2.47161 2.65792 2.99409 3.04742 3.17461 3.26220 3.40660 3.53333 3.59331 3.66162 3.68310 3.73617 3.75714 3.83360 3.83641 3.92137 4.01185 4.02076 4.04887 4.17059 4.24371 4.32495 4.39804 4.40567 4.45164 4.45922 4.57808 4.64684 4.69939 4.73401 4.80508 4.85658 4.92273 4.96949 4.97725 5.06081 5.16438 5.23497 5.34593 5.38430 5.46111 5.76904 5.90959 6.45131 6.80988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.543 6.543 2 C -0.086 4.086 3 Si 0.945 3.055 4 H -0.247 1.247 5 H -0.248 1.248 6 H -0.255 1.255 7 C -0.059 4.059 8 C -0.092 4.092 9 C -0.088 4.088 10 C -0.080 4.080 11 C 0.003 3.997 12 C -0.232 4.232 13 C 0.566 3.434 14 O -0.523 6.523 15 N -0.626 5.626 16 C 0.122 3.878 17 C -0.647 4.647 18 S 2.615 3.385 19 O -0.954 6.954 20 O -0.953 6.953 21 N -1.001 6.001 22 C 0.134 3.866 23 C -0.135 4.135 24 C -0.112 4.112 25 C -0.147 4.147 26 C 0.375 3.625 27 C -0.091 4.091 28 C -0.126 4.126 29 H 0.382 0.618 30 H 0.079 0.921 31 H 0.132 0.868 32 H 0.133 0.867 33 H 0.140 0.860 34 H 0.137 0.863 35 H 0.126 0.874 36 H 0.093 0.907 37 H 0.156 0.844 38 H 0.145 0.855 39 H 0.075 0.925 40 H 0.085 0.915 41 H 0.083 0.917 42 H 0.071 0.929 43 H 0.067 0.933 44 H 0.075 0.925 45 H 0.078 0.922 46 H 0.082 0.918 47 H 0.090 0.910 48 H 0.131 0.869 49 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.125 1.569 -6.872 7.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.350 6.350 2 C -0.196 4.196 3 Si 0.767 3.233 4 H -0.170 1.170 5 H -0.172 1.172 6 H -0.180 1.180 7 C -0.059 4.059 8 C -0.110 4.110 9 C -0.106 4.106 10 C -0.080 4.080 11 C -0.016 4.016 12 C -0.252 4.252 13 C 0.358 3.642 14 O -0.400 6.400 15 N -0.361 5.361 16 C -0.001 4.001 17 C -0.777 4.777 18 S 2.710 3.290 19 O -0.943 6.943 20 O -0.942 6.942 21 N -0.843 5.843 22 C 0.010 3.990 23 C -0.174 4.174 24 C -0.150 4.150 25 C -0.187 4.187 26 C 0.183 3.817 27 C -0.108 4.108 28 C -0.143 4.143 29 H 0.230 0.770 30 H 0.097 0.903 31 H 0.150 0.850 32 H 0.151 0.849 33 H 0.158 0.842 34 H 0.154 0.846 35 H 0.144 0.856 36 H 0.111 0.889 37 H 0.174 0.826 38 H 0.163 0.837 39 H 0.093 0.907 40 H 0.103 0.897 41 H 0.101 0.899 42 H 0.089 0.911 43 H 0.086 0.914 44 H 0.094 0.906 45 H 0.096 0.904 46 H 0.101 0.899 47 H 0.108 0.892 48 H 0.149 0.851 49 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 1.446 1.931 -5.396 5.910 hybrid contribution -0.316 -0.620 -0.675 0.969 sum 1.130 1.311 -6.070 6.312 Atomic orbital electron populations 1.86510 1.16978 1.81761 1.49704 1.24782 0.85919 1.10732 0.98186 0.85757 0.80694 0.75393 0.81439 1.17019 1.17194 1.17953 1.19466 0.97280 0.94275 0.94842 1.20984 0.98477 0.93703 0.97842 1.21455 0.95933 1.00212 0.92987 1.19011 1.00421 0.93644 0.94908 1.22482 0.89111 1.00072 0.89980 1.22949 1.05614 1.01207 0.95475 1.18261 0.76728 0.86204 0.82991 1.90859 1.56002 1.16556 1.76543 1.47741 1.51991 1.08738 1.27649 1.20820 0.97768 1.00570 0.80945 1.30570 1.13156 1.25874 1.08137 1.04824 0.75160 0.76499 0.72520 1.93617 1.40074 1.84384 1.76240 1.93625 1.53944 1.71051 1.75621 1.57290 1.88707 1.17041 1.21305 1.21033 0.99712 0.77322 1.00937 1.21160 0.99748 1.00992 0.95496 1.21101 1.03070 0.93479 0.97377 1.22309 0.98649 0.97847 0.99937 1.19602 0.99605 0.77029 0.85444 1.21291 0.98782 0.93600 0.97176 1.20946 0.99510 0.99690 0.94184 0.77048 0.90327 0.85018 0.84878 0.84239 0.84584 0.85614 0.88884 0.82599 0.83658 0.90692 0.89685 0.89893 0.91058 0.91441 0.90619 0.90361 0.89915 0.89227 0.85115 0.85761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.48 12.81 -35.23 -0.45 0.03 16 2 C -0.09 0.14 2.79 36.00 0.10 0.24 16 3 Si 0.94 -1.73 25.12 -169.99 -4.27 -6.00 16 4 H -0.25 0.12 7.04 56.52 0.40 0.52 16 5 H -0.25 0.35 7.11 56.52 0.40 0.75 16 6 H -0.26 0.38 7.11 56.52 0.40 0.78 16 7 C -0.06 0.01 5.39 -104.50 -0.56 -0.56 16 8 C -0.09 0.03 9.66 -39.65 -0.38 -0.35 16 9 C -0.09 0.07 9.80 -39.11 -0.38 -0.32 16 10 C -0.08 0.06 5.87 -105.06 -0.62 -0.56 16 11 C 0.00 0.00 9.46 -37.16 -0.35 -0.35 16 12 C -0.23 0.28 8.07 -37.50 -0.30 -0.02 16 13 C 0.57 0.43 7.54 -12.96 -0.10 0.33 16 14 O -0.52 -2.07 15.53 5.19 0.08 -1.99 16 15 N -0.63 0.50 2.52 -174.48 -0.44 0.06 16 16 C 0.12 -0.16 6.21 -4.92 -0.03 -0.19 16 17 C -0.65 0.97 6.51 36.34 0.24 1.20 16 18 S 2.61 3.16 5.23 -107.50 -0.56 2.60 16 19 O -0.95 -3.82 17.78 -57.61 -1.02 -4.84 16 20 O -0.95 -4.47 17.93 -57.61 -1.03 -5.51 16 21 N -1.00 0.55 3.25 -112.90 -0.37 0.18 16 22 C 0.13 -0.19 6.19 -4.51 -0.03 -0.22 16 23 C -0.14 0.40 5.87 -28.38 -0.17 0.23 16 24 C -0.11 0.43 5.90 -27.56 -0.16 0.26 16 25 C -0.15 0.44 5.59 -26.81 -0.15 0.29 16 26 C 0.38 -0.69 2.41 -131.19 -0.32 -1.01 16 27 C -0.09 0.11 9.41 -39.11 -0.37 -0.26 16 28 C -0.13 0.07 8.65 -39.65 -0.34 -0.27 16 29 H 0.38 -1.98 8.74 45.56 0.40 -1.58 16 30 H 0.08 -0.26 7.96 -51.93 -0.41 -0.68 16 31 H 0.13 -0.18 8.06 -52.49 -0.42 -0.60 16 32 H 0.13 -0.33 8.06 -52.49 -0.42 -0.75 16 33 H 0.14 -0.08 7.53 -52.48 -0.40 -0.48 16 34 H 0.14 -0.49 4.12 -52.49 -0.22 -0.70 16 35 H 0.13 -0.10 6.90 -51.93 -0.36 -0.45 16 36 H 0.09 -0.26 8.14 -51.93 -0.42 -0.68 16 37 H 0.16 -0.56 8.14 -51.89 -0.42 -0.99 16 38 H 0.15 -0.23 8.14 -51.89 -0.42 -0.66 16 39 H 0.07 -0.19 8.14 -51.93 -0.42 -0.61 16 40 H 0.08 -0.07 7.60 -51.93 -0.39 -0.47 16 41 H 0.08 -0.34 8.14 -51.93 -0.42 -0.77 16 42 H 0.07 -0.15 8.14 -51.93 -0.42 -0.57 16 43 H 0.07 -0.32 8.14 -51.93 -0.42 -0.75 16 44 H 0.08 -0.30 8.14 -51.93 -0.42 -0.73 16 45 H 0.08 -0.17 8.14 -51.93 -0.42 -0.60 16 46 H 0.08 -0.30 7.72 -51.93 -0.40 -0.70 16 47 H 0.09 -0.28 5.84 -51.92 -0.30 -0.58 16 48 H 0.13 -0.47 6.17 -52.49 -0.32 -0.80 16 49 H 0.12 -0.23 4.84 -52.49 -0.25 -0.48 16 LS Contribution 393.55 15.07 5.93 5.93 Total: 0.00 -11.47 393.55 -12.17 -23.64 By element: Atomic # 1 Polarization: -6.46 SS G_CDS: -6.11 Total: -12.57 kcal Atomic # 6 Polarization: 2.38 SS G_CDS: -3.93 Total: -1.54 kcal Atomic # 7 Polarization: 1.05 SS G_CDS: -0.81 Total: 0.24 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: -2.43 Total: -12.31 kcal Atomic # 14 Polarization: -1.73 SS G_CDS: -4.27 Total: -6.00 kcal Atomic # 16 Polarization: 3.16 SS G_CDS: -0.56 Total: 2.60 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -11.47 -12.17 -23.64 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14725706_12360594.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.284 kcal (2) G-P(sol) polarization free energy of solvation -11.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds