Wall clock time and date at job start Sun Mar 7 2021 02:00:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86300 * 109.46755 * 2 1 4 4 H 1.48504 * 109.47276 * 60.00310 * 3 2 1 5 5 H 1.48504 * 109.47368 * 179.97438 * 3 2 1 6 6 H 1.48497 * 109.47498 * 300.00061 * 3 2 1 7 7 C 1.50697 * 109.47180 * 119.99845 * 2 1 3 8 8 C 1.38405 * 119.82769 * 65.00567 * 7 2 1 9 9 C 1.37887 * 120.16974 * 180.02562 * 8 7 2 10 10 C 1.39832 * 119.82824 * 359.97438 * 9 8 7 11 11 C 1.47207 * 120.16945 * 180.02562 * 10 9 8 12 12 C 1.34811 * 120.00011 * 180.02562 * 11 10 9 13 13 C 1.46434 * 119.99655 * 179.72202 * 12 11 10 14 14 O 1.21695 * 120.00301 * 355.32032 * 13 12 11 15 15 N 1.34778 * 119.99458 * 175.31277 * 13 12 11 16 16 C 1.46385 * 119.19253 * 184.97112 * 15 13 12 17 17 C 1.51388 * 108.29665 * 245.48828 * 16 15 13 18 18 S 1.80465 * 110.05121 * 300.96706 * 17 16 15 19 19 O 1.42094 * 110.10543 * 278.06420 * 18 17 16 20 20 O 1.42106 * 110.04488 * 142.78018 * 18 17 16 21 21 N 1.65056 * 107.46572 * 30.43797 * 18 17 16 22 22 C 1.47386 * 117.13835 * 179.72507 * 21 18 17 23 23 C 1.51100 * 112.71329 * 135.34803 * 22 21 18 24 24 C 1.51628 * 113.83556 * 41.46601 * 23 22 21 25 25 C 1.52731 * 110.89521 * 309.42110 * 24 23 22 26 26 C 1.44628 * 119.19997 * 5.24472 * 15 13 12 27 27 C 1.39834 * 119.66014 * 0.27446 * 10 9 8 28 28 C 1.37888 * 119.82739 * 359.45237 * 27 10 9 29 29 H 0.96700 * 113.99806 * 60.00348 * 1 2 3 30 30 H 1.08994 * 109.47487 * 240.00281 * 2 1 3 31 31 H 1.08002 * 119.91004 * 359.97438 * 8 7 2 32 32 H 1.07999 * 120.08335 * 179.97438 * 9 8 7 33 33 H 1.08007 * 119.99897 * 359.97438 * 11 10 9 34 34 H 1.07998 * 119.99819 * 359.97438 * 12 11 10 35 35 H 1.08994 * 109.86733 * 5.55854 * 16 15 13 36 36 H 1.09001 * 109.86097 * 126.59352 * 16 15 13 37 37 H 1.09001 * 109.59139 * 180.61804 * 17 16 15 38 38 H 1.09003 * 109.05495 * 60.97782 * 17 16 15 39 39 H 1.09005 * 108.83455 * 256.17812 * 22 21 18 40 40 H 1.08997 * 108.83376 * 14.51399 * 22 21 18 41 41 H 1.09006 * 108.60938 * 162.59518 * 23 22 21 42 42 H 1.08998 * 108.61329 * 280.33892 * 23 22 21 43 43 H 1.09006 * 109.10319 * 70.24136 * 24 23 22 44 44 H 1.08994 * 109.10554 * 189.33503 * 24 23 22 45 45 H 1.09004 * 110.05578 * 298.84112 * 25 24 23 46 46 H 1.09003 * 109.11495 * 178.53157 * 25 24 23 47 47 H 1.09010 * 107.12058 * 28.28398 * 26 15 13 48 48 H 1.07999 * 120.08633 * 179.70133 * 27 10 9 49 49 H 1.08000 * 119.91967 * 180.27454 * 28 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 1 1.5549 2.4565 1.2126 5 1 3.5349 1.7567 0.0006 6 1 1.5549 2.4566 -1.2124 7 6 1.9313 -0.7104 1.2305 8 6 1.6825 -2.0619 1.3949 9 6 2.1384 -2.7188 2.5183 10 6 2.8542 -2.0160 3.4924 11 6 3.3449 -2.7099 4.6944 12 6 4.0343 -2.0289 5.6317 13 6 4.5171 -2.7180 6.8302 14 8 4.2240 -3.8835 7.0217 15 7 5.2863 -2.0613 7.7211 16 6 5.8498 -2.7950 8.8555 17 6 5.2323 -2.2521 10.1266 18 16 5.5785 -0.4874 10.2779 19 8 6.8791 -0.2891 10.8150 20 8 4.4561 0.1832 10.8345 21 7 5.6864 0.1290 8.7506 22 6 5.9610 1.5717 8.6257 23 6 7.0100 1.8777 7.5821 24 6 6.8715 1.0567 6.3150 25 6 6.7522 -0.4309 6.6400 26 6 5.5299 -0.6477 7.5362 27 6 3.0971 -0.6496 3.3215 28 6 2.6395 -0.0080 2.1900 29 1 -0.3933 0.4417 -0.7651 30 1 1.7924 -0.5137 -0.8899 31 1 1.1291 -2.6031 0.6418 32 1 1.9431 -3.7733 2.6454 33 1 3.1520 -3.7645 4.8257 34 1 4.2268 -0.9744 5.5005 35 1 5.6255 -3.8571 8.7579 36 1 6.9288 -2.6455 8.8941 37 1 5.6462 -2.7774 10.9874 38 1 4.1540 -2.4079 10.0932 39 1 5.0370 2.0837 8.3566 40 1 6.3025 1.9496 9.5894 41 1 6.9433 2.9340 7.3213 42 1 7.9937 1.6903 8.0123 43 1 5.9848 1.3848 5.7724 44 1 7.7505 1.2142 5.6900 45 1 7.6486 -0.7736 7.1568 46 1 6.6281 -0.9901 5.7126 47 1 4.6699 -0.2408 7.0040 48 1 3.6450 -0.0990 4.0719 49 1 2.8301 1.0464 2.0544 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14725706_12360594.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:00:24 Heat of formation + Delta-G solvation = -78.936546 kcal Electronic energy + Delta-G solvation = -33861.907243 eV Core-core repulsion = 29383.244420 eV Total energy + Delta-G solvation = -4478.662823 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 380.141 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.86435 -40.53127 -39.58184 -38.25654 -37.75036 -37.39158 -36.86626 -35.29470 -33.73348 -33.31650 -32.18295 -31.31405 -30.94562 -27.37235 -25.93055 -25.33099 -24.83779 -24.02959 -23.07103 -21.85620 -21.35048 -20.65380 -19.27076 -19.08208 -18.82663 -18.44305 -17.81618 -17.64191 -17.16552 -16.92601 -16.73865 -16.44639 -16.09634 -15.88057 -15.75838 -15.43197 -15.31680 -15.13332 -15.02312 -14.75927 -14.49558 -14.37529 -14.36329 -14.20928 -13.94726 -13.91223 -13.55945 -13.41894 -13.23057 -13.21214 -13.18052 -13.02558 -12.39712 -12.28598 -12.17118 -12.04834 -11.89525 -11.87181 -11.69275 -11.64039 -11.47853 -11.33545 -11.26543 -10.61950 -10.28843 -9.96952 -9.85907 -9.27069 -1.05726 -0.61350 0.40149 0.79799 1.17230 1.18810 1.48517 1.53885 1.58977 1.92978 2.02564 2.42408 2.78013 3.02829 3.10713 3.28286 3.46497 3.49486 3.70045 3.73694 3.81051 3.83195 3.89523 3.90445 4.00372 4.06257 4.11064 4.15680 4.17785 4.23392 4.34066 4.40265 4.50589 4.50970 4.56463 4.58402 4.63726 4.76945 4.83360 4.87189 4.93934 4.94955 5.04522 5.10047 5.11993 5.25113 5.27826 5.35281 5.44155 5.47834 5.50177 5.57040 5.90152 5.96820 6.80882 6.81424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.563 6.563 2 C -0.088 4.088 3 Si 0.977 3.023 4 H -0.267 1.267 5 H -0.252 1.252 6 H -0.261 1.261 7 C -0.074 4.074 8 C -0.106 4.106 9 C -0.096 4.096 10 C -0.088 4.088 11 C 0.004 3.996 12 C -0.230 4.230 13 C 0.564 3.436 14 O -0.562 6.562 15 N -0.623 5.623 16 C 0.115 3.885 17 C -0.630 4.630 18 S 2.617 3.383 19 O -0.989 6.989 20 O -0.995 6.995 21 N -0.999 5.999 22 C 0.125 3.875 23 C -0.132 4.132 24 C -0.111 4.111 25 C -0.144 4.144 26 C 0.368 3.632 27 C -0.091 4.091 28 C -0.139 4.139 29 H 0.398 0.602 30 H 0.096 0.904 31 H 0.137 0.863 32 H 0.144 0.856 33 H 0.132 0.868 34 H 0.162 0.838 35 H 0.123 0.877 36 H 0.109 0.891 37 H 0.180 0.820 38 H 0.149 0.851 39 H 0.088 0.912 40 H 0.071 0.929 41 H 0.098 0.902 42 H 0.058 0.942 43 H 0.085 0.915 44 H 0.082 0.918 45 H 0.068 0.932 46 H 0.094 0.906 47 H 0.108 0.892 48 H 0.156 0.844 49 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.359 1.976 -8.131 8.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.372 6.372 2 C -0.198 4.198 3 Si 0.801 3.199 4 H -0.192 1.192 5 H -0.176 1.176 6 H -0.185 1.185 7 C -0.074 4.074 8 C -0.124 4.124 9 C -0.114 4.114 10 C -0.088 4.088 11 C -0.016 4.016 12 C -0.250 4.250 13 C 0.357 3.643 14 O -0.441 6.441 15 N -0.357 5.357 16 C -0.008 4.008 17 C -0.763 4.763 18 S 2.716 3.284 19 O -0.979 6.979 20 O -0.985 6.985 21 N -0.843 5.843 22 C 0.001 3.999 23 C -0.171 4.171 24 C -0.149 4.149 25 C -0.185 4.185 26 C 0.177 3.823 27 C -0.109 4.109 28 C -0.156 4.156 29 H 0.249 0.751 30 H 0.113 0.887 31 H 0.154 0.846 32 H 0.161 0.839 33 H 0.150 0.850 34 H 0.179 0.821 35 H 0.141 0.859 36 H 0.127 0.873 37 H 0.197 0.803 38 H 0.168 0.832 39 H 0.106 0.894 40 H 0.090 0.910 41 H 0.116 0.884 42 H 0.077 0.923 43 H 0.104 0.896 44 H 0.101 0.899 45 H 0.087 0.913 46 H 0.113 0.887 47 H 0.125 0.875 48 H 0.173 0.827 49 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 1.694 2.389 -6.662 7.277 hybrid contribution -0.405 -0.775 -0.305 0.926 sum 1.290 1.615 -6.967 7.267 Atomic orbital electron populations 1.86462 1.17449 1.82241 1.51087 1.24849 0.85654 1.10918 0.98341 0.85305 0.79955 0.74661 0.79993 1.19215 1.17633 1.18522 1.19769 0.97459 0.94595 0.95594 1.21134 0.98974 0.93972 0.98279 1.21668 0.95824 1.00912 0.92976 1.19083 1.00724 0.94071 0.94886 1.22445 0.89163 0.99849 0.90152 1.23035 1.05316 1.02188 0.94421 1.18565 0.76360 0.85807 0.83530 1.90842 1.57568 1.18237 1.77484 1.47781 1.51316 1.09195 1.27400 1.20965 0.98720 1.00403 0.80737 1.30424 1.13632 1.22905 1.09291 1.04424 0.73868 0.77400 0.72690 1.93574 1.41304 1.85511 1.77470 1.93574 1.54901 1.72956 1.77031 1.57126 1.88624 1.17588 1.20934 1.21223 1.00900 0.76817 1.00979 1.21162 0.98392 1.02148 0.95427 1.21132 1.04286 0.92507 0.96968 1.22314 0.97490 0.98758 0.99898 1.19907 1.01092 0.76319 0.85022 1.21588 0.98391 0.93459 0.97462 1.21166 0.99758 1.00271 0.94452 0.75139 0.88667 0.84553 0.83867 0.85022 0.82077 0.85886 0.87339 0.80283 0.83237 0.89414 0.91018 0.88383 0.92311 0.89619 0.89949 0.91285 0.88735 0.87487 0.82669 0.84858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 1.15 12.81 -148.98 -1.91 -0.76 16 2 C -0.09 0.32 2.79 71.24 0.20 0.52 16 3 Si 0.98 -4.01 25.12 68.60 1.72 -2.29 16 4 H -0.27 0.24 7.04 99.48 0.70 0.94 16 5 H -0.25 0.92 7.11 99.48 0.71 1.62 16 6 H -0.26 0.91 7.11 99.48 0.71 1.62 16 7 C -0.07 0.04 5.39 -19.79 -0.11 -0.07 16 8 C -0.11 0.06 9.66 22.23 0.21 0.27 16 9 C -0.10 0.14 9.80 22.57 0.22 0.36 16 10 C -0.09 0.17 5.87 -20.15 -0.12 0.05 16 11 C 0.00 -0.01 9.46 23.84 0.23 0.22 16 12 C -0.23 0.80 8.07 23.62 0.19 0.99 16 13 C 0.56 0.68 7.54 86.38 0.65 1.33 16 14 O -0.56 -4.74 15.53 -4.33 -0.07 -4.81 16 15 N -0.62 1.32 2.52 -824.16 -2.07 -0.75 16 16 C 0.12 -0.33 6.21 85.87 0.53 0.21 16 17 C -0.63 1.92 6.51 71.45 0.47 2.38 16 18 S 2.62 8.69 5.23 -56.49 -0.30 8.40 16 19 O -0.99 -9.31 17.78 -127.58 -2.27 -11.58 16 20 O -1.00 -10.80 17.93 -127.58 -2.29 -13.09 16 21 N -1.00 1.08 3.25 -511.11 -1.66 -0.58 16 22 C 0.12 -0.35 6.19 85.59 0.53 0.18 16 23 C -0.13 0.88 5.87 29.52 0.17 1.06 16 24 C -0.11 1.05 5.90 30.05 0.18 1.22 16 25 C -0.14 1.06 5.59 30.54 0.17 1.23 16 26 C 0.37 -1.71 2.41 130.87 0.32 -1.40 16 27 C -0.09 0.34 9.41 22.57 0.21 0.55 16 28 C -0.14 0.26 8.65 22.23 0.19 0.45 16 29 H 0.40 -4.28 8.74 -74.06 -0.65 -4.92 16 30 H 0.10 -0.71 7.96 -2.39 -0.02 -0.73 16 31 H 0.14 -0.33 8.06 -2.91 -0.02 -0.36 16 32 H 0.14 -0.65 8.06 -2.91 -0.02 -0.67 16 33 H 0.13 -0.07 7.53 -2.91 -0.02 -0.09 16 34 H 0.16 -1.53 4.12 -2.91 -0.01 -1.55 16 35 H 0.12 -0.18 6.90 -2.39 -0.02 -0.20 16 36 H 0.11 -0.64 8.14 -2.39 -0.02 -0.66 16 37 H 0.18 -1.40 8.14 -2.41 -0.02 -1.42 16 38 H 0.15 -0.49 8.14 -2.41 -0.02 -0.51 16 39 H 0.09 -0.49 8.14 -2.38 -0.02 -0.50 16 40 H 0.07 -0.02 7.60 -2.39 -0.02 -0.03 16 41 H 0.10 -0.94 8.14 -2.38 -0.02 -0.96 16 42 H 0.06 -0.24 8.14 -2.39 -0.02 -0.25 16 43 H 0.09 -1.08 8.14 -2.38 -0.02 -1.10 16 44 H 0.08 -0.83 8.14 -2.39 -0.02 -0.85 16 45 H 0.07 -0.35 8.14 -2.39 -0.02 -0.37 16 46 H 0.09 -0.88 7.72 -2.39 -0.02 -0.90 16 47 H 0.11 -0.87 5.84 -2.38 -0.01 -0.88 16 48 H 0.16 -1.51 6.17 -2.91 -0.02 -1.53 16 49 H 0.13 -0.60 4.84 -2.91 -0.01 -0.61 16 Total: 0.00 -27.33 393.55 -3.50 -30.83 By element: Atomic # 1 Polarization: -16.02 SS G_CDS: 1.09 Total: -14.93 kcal Atomic # 6 Polarization: 5.31 SS G_CDS: 4.25 Total: 9.55 kcal Atomic # 7 Polarization: 2.40 SS G_CDS: -3.73 Total: -1.33 kcal Atomic # 8 Polarization: -23.70 SS G_CDS: -6.53 Total: -30.23 kcal Atomic # 14 Polarization: -4.01 SS G_CDS: 1.72 Total: -2.29 kcal Atomic # 16 Polarization: 8.69 SS G_CDS: -0.30 Total: 8.40 kcal Total: -27.33 -3.50 -30.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14725706_12360594.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.106 kcal (2) G-P(sol) polarization free energy of solvation -27.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds