Wall clock time and date at job start Sun Mar 7 2021 04:32:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35650 * 117.00294 * 2 1 4 4 C 1.40142 * 120.14860 * 180.02562 * 3 2 1 5 5 C 1.47527 * 120.19271 * 359.97438 * 4 3 2 6 6 O 1.21589 * 120.00357 * 0.02562 * 5 4 3 7 7 N 1.34775 * 120.00084 * 179.97438 * 5 4 3 8 8 C 1.46499 * 120.00129 * 179.97438 * 7 5 4 9 9 H 1.08998 * 112.85206 * 23.80687 * 8 7 5 10 10 C 1.53783 * 113.61575 * 154.99917 * 8 7 5 11 11 C 1.53780 * 87.08244 * 139.97880 * 10 8 7 12 12 H 1.09001 * 113.60760 * 89.20021 * 11 10 8 13 13 C 1.50695 * 113.61817 * 220.01932 * 11 10 8 14 14 N 1.30502 * 125.64858 * 264.69559 * 13 11 10 15 15 C 1.34137 * 109.25185 * 179.89435 * 14 13 11 16 16 C 1.34668 * 108.02104 * 0.36977 * 15 14 13 17 17 N 1.35047 * 125.65074 * 85.00520 * 13 11 10 18 18 C 1.53779 * 87.08100 * 334.56979 * 11 10 8 19 19 C 1.39714 * 119.61364 * 179.73016 * 4 3 2 20 20 C 1.37788 * 119.90708 * 0.49171 * 19 4 3 21 21 C 1.50696 * 119.84726 * 179.75667 * 20 19 4 22 22 O 1.42903 * 109.47131 * 299.72422 * 21 20 19 23 23 Si 1.86305 * 109.47185 * 179.72962 * 21 20 19 24 24 C 1.38547 * 120.29964 * 359.48239 * 20 19 4 25 25 C 1.38054 * 120.39344 * 0.29361 * 24 20 19 26 26 H 1.09001 * 109.47458 * 300.00553 * 1 2 3 27 27 H 1.09003 * 109.47021 * 60.00040 * 1 2 3 28 28 H 1.09000 * 109.47639 * 180.02562 * 1 2 3 29 29 H 0.97001 * 119.99863 * 0.02562 * 7 5 4 30 30 H 1.08994 * 113.62047 * 254.53566 * 10 8 7 31 31 H 1.09005 * 113.61420 * 25.43793 * 10 8 7 32 32 H 1.07996 * 125.98412 * 180.11576 * 15 14 13 33 33 H 1.08002 * 126.58894 * 179.81568 * 16 15 14 34 34 H 0.97000 * 126.39146 * 359.94046 * 17 13 11 35 35 H 1.08997 * 113.61406 * 270.87898 * 18 11 10 36 36 H 1.09007 * 113.61130 * 139.97433 * 18 11 10 37 37 H 1.07999 * 120.04541 * 180.24820 * 19 4 3 38 38 H 1.08999 * 109.47358 * 59.72782 * 21 20 19 39 39 H 0.96700 * 114.00311 * 300.00591 * 22 21 20 40 40 H 1.48499 * 109.99670 * 58.67633 * 23 21 20 41 41 H 1.48497 * 110.00233 * 179.97438 * 23 21 20 42 42 H 1.08006 * 119.80243 * 180.27224 * 24 20 19 43 43 H 1.07996 * 119.95846 * 179.97438 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0448 1.2086 0.0000 4 6 3.4441 1.2855 -0.0005 5 6 4.2549 0.0530 -0.0005 6 8 3.7094 -1.0336 -0.0005 7 7 5.6004 0.1315 -0.0016 8 6 6.4055 -1.0924 -0.0010 9 1 5.8702 -1.9515 -0.4053 10 6 7.8106 -0.9058 -0.5977 11 6 8.3241 -1.8199 0.5273 12 1 8.3150 -2.8785 0.2680 13 6 9.6371 -1.3729 1.1164 14 7 10.8160 -1.8078 0.7642 15 6 11.7531 -1.1886 1.4976 16 6 11.1307 -0.3437 2.3416 17 7 9.7884 -0.4602 2.1003 18 6 7.0991 -1.3729 1.3425 19 6 4.0668 2.5362 -0.0063 20 6 3.3039 3.6836 -0.0011 21 6 3.9770 5.0318 -0.0017 22 8 4.7924 5.1577 1.1651 23 14 2.6828 6.3720 -0.0022 24 6 1.9207 3.6032 -0.0010 25 6 1.2925 2.3739 0.0000 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 6.0357 0.9984 -0.0020 30 1 7.9224 -1.3341 -1.5937 31 1 8.1805 0.1174 -0.5319 32 1 12.8195 -1.3437 1.4266 33 1 11.6004 0.3021 3.0687 34 1 9.0783 0.0227 2.5513 35 1 7.2745 -0.4774 1.9387 36 1 6.6366 -2.1785 1.9128 37 1 5.1447 2.6036 -0.0108 38 1 4.5989 5.1271 -0.8917 39 1 4.3040 5.0829 1.9963 40 1 1.8083 6.2339 1.1900 41 1 3.3337 7.7067 -0.0022 42 1 1.3305 4.5078 -0.0014 43 1 0.2139 2.3195 0.0004 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14772358_12496546.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:32:33 Heat of formation + Delta-G solvation = 18.543108 kcal Electronic energy + Delta-G solvation = -27701.691485 eV Core-core repulsion = 23716.090708 eV Total energy + Delta-G solvation = -3985.600777 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 330.141 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.10946 -41.80907 -40.62317 -39.23498 -39.05966 -37.23243 -34.79480 -33.46830 -32.59235 -31.83119 -30.50761 -28.54142 -26.83776 -26.51998 -26.16392 -24.83503 -22.91678 -22.43866 -21.71712 -21.48255 -20.76505 -19.42733 -19.03921 -18.41385 -18.15156 -17.26441 -16.94847 -16.83407 -16.44299 -16.16639 -16.01860 -15.85637 -15.78219 -15.76295 -14.97071 -14.90827 -14.65052 -14.54753 -14.51609 -13.98955 -13.66255 -13.57348 -13.50416 -13.32884 -13.09552 -12.50116 -12.42504 -12.23302 -12.04813 -12.02481 -11.73342 -11.67801 -11.05105 -11.04408 -11.00763 -10.56514 -10.27999 -10.03491 -9.35868 -9.29251 -4.89960 -0.26787 0.21462 1.07963 1.33057 1.61301 1.75702 1.98753 2.02585 2.12122 2.23064 2.27539 2.66881 3.27526 3.36500 3.40966 3.57249 3.60262 3.63034 3.73389 3.77464 3.93078 4.01250 4.16014 4.23801 4.30756 4.36475 4.40045 4.49643 4.54654 4.57427 4.62822 4.63393 4.69786 4.74417 4.77310 4.84864 4.92854 4.95783 5.06391 5.11525 5.19000 5.27218 5.48617 5.56462 5.78199 6.29893 6.46828 6.50145 6.50757 7.12740 7.19976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.313 6.313 3 C 0.171 3.829 4 C -0.197 4.197 5 C 0.558 3.442 6 O -0.562 6.562 7 N -0.706 5.706 8 C 0.127 3.873 9 H 0.106 0.894 10 C -0.121 4.121 11 C -0.022 4.022 12 H 0.120 0.880 13 C 0.213 3.787 14 N -0.532 5.532 15 C -0.063 4.063 16 C -0.043 4.043 17 N -0.556 5.556 18 C -0.140 4.140 19 C -0.015 4.015 20 C -0.165 4.165 21 C -0.071 4.071 22 O -0.546 6.546 23 Si 0.758 3.242 24 C -0.042 4.042 25 C -0.213 4.213 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.107 0.893 29 H 0.411 0.589 30 H 0.087 0.913 31 H 0.097 0.903 32 H 0.178 0.822 33 H 0.210 0.790 34 H 0.431 0.569 35 H 0.096 0.904 36 H 0.080 0.920 37 H 0.151 0.849 38 H 0.131 0.869 39 H 0.386 0.614 40 H -0.281 1.281 41 H -0.306 1.306 42 H 0.156 0.844 43 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.988 6.554 0.743 7.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.224 6.224 3 C 0.123 3.877 4 C -0.201 4.201 5 C 0.347 3.653 6 O -0.441 6.441 7 N -0.358 5.358 8 C 0.022 3.978 9 H 0.124 0.876 10 C -0.160 4.160 11 C -0.043 4.043 12 H 0.138 0.862 13 C -0.052 4.052 14 N -0.252 5.252 15 C -0.210 4.210 16 C -0.177 4.177 17 N -0.161 5.161 18 C -0.179 4.179 19 C -0.034 4.034 20 C -0.166 4.166 21 C -0.181 4.181 22 O -0.354 6.354 23 Si 0.664 3.336 24 C -0.060 4.060 25 C -0.231 4.231 26 H 0.090 0.910 27 H 0.093 0.907 28 H 0.125 0.875 29 H 0.250 0.750 30 H 0.106 0.894 31 H 0.115 0.885 32 H 0.195 0.805 33 H 0.227 0.773 34 H 0.271 0.729 35 H 0.115 0.885 36 H 0.099 0.901 37 H 0.168 0.832 38 H 0.148 0.852 39 H 0.236 0.764 40 H -0.207 1.207 41 H -0.235 1.235 42 H 0.173 0.827 43 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -3.964 5.706 0.107 6.948 hybrid contribution 0.154 0.703 1.987 2.113 sum -3.809 6.409 2.094 7.744 Atomic orbital electron populations 1.23444 0.76549 1.05463 1.02842 1.86333 1.23169 1.26394 1.86519 1.19431 0.91402 0.85533 0.91355 1.19410 0.91106 0.94022 1.15514 1.18314 0.82709 0.88605 0.75646 1.90818 1.72463 1.30268 1.50545 1.45749 1.05024 1.10021 1.75011 1.22373 0.90094 0.88568 0.96780 0.87581 1.23362 0.92850 1.00755 0.99006 1.20766 0.85329 1.01350 0.96859 0.86220 1.23095 0.95800 0.93582 0.92702 1.70187 0.99252 1.27609 1.28153 1.22755 1.00166 0.99789 0.98282 1.23285 0.82846 1.06031 1.05541 1.43255 1.08823 1.33716 1.30315 1.23532 0.94483 1.02531 0.97351 1.21093 1.00701 0.89119 0.92494 1.20166 0.93793 0.95865 1.06752 1.25073 1.02833 0.98799 0.91348 1.86572 1.37773 1.94485 1.16601 0.94189 0.77712 0.74053 0.87675 1.21274 0.93854 0.97861 0.93018 1.21468 1.01773 0.90922 1.08951 0.91008 0.90691 0.87482 0.75045 0.89389 0.88461 0.80513 0.77343 0.72852 0.88527 0.90126 0.83150 0.85164 0.76445 1.20706 1.23484 0.82664 0.82101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.03 9.81 113.37 1.11 1.09 16 2 O -0.31 -2.27 8.57 -68.73 -0.59 -2.86 16 3 C 0.17 0.66 6.70 22.84 0.15 0.82 16 4 C -0.20 -0.65 5.89 -20.01 -0.12 -0.77 16 5 C 0.56 3.75 7.76 86.69 0.67 4.42 16 6 O -0.56 -8.70 14.76 16.92 0.25 -8.45 16 7 N -0.71 0.54 5.30 -443.21 -2.35 -1.81 16 8 C 0.13 -0.10 4.24 45.52 0.19 0.10 16 9 H 0.11 0.37 7.46 -2.39 -0.02 0.35 16 10 C -0.12 0.34 7.38 31.12 0.23 0.57 16 11 C -0.02 0.01 4.29 -11.02 -0.05 -0.03 16 12 H 0.12 0.05 8.14 -2.39 -0.02 0.03 16 13 C 0.21 0.77 7.36 138.12 1.02 1.79 16 14 N -0.53 -5.28 11.25 -188.13 -2.12 -7.40 16 15 C -0.06 -0.35 11.87 83.52 0.99 0.64 16 16 C -0.04 0.02 12.04 83.09 1.00 1.02 16 17 N -0.56 0.89 5.94 -186.27 -1.11 -0.22 16 18 C -0.14 0.41 7.35 31.12 0.23 0.64 16 19 C -0.02 0.04 9.09 22.52 0.20 0.25 16 20 C -0.17 0.73 5.38 -19.90 -0.11 0.62 16 21 C -0.07 0.41 2.81 71.23 0.20 0.61 16 22 O -0.55 1.61 12.77 -148.98 -1.90 -0.29 16 23 Si 0.76 -4.44 29.77 68.60 2.04 -2.39 16 24 C -0.04 0.22 8.66 22.30 0.19 0.41 16 25 C -0.21 0.55 9.03 22.34 0.20 0.76 16 26 H 0.07 -0.40 7.66 -2.39 -0.02 -0.42 16 27 H 0.07 -0.44 7.66 -2.39 -0.02 -0.46 16 28 H 0.11 -0.36 8.14 -2.39 -0.02 -0.38 16 29 H 0.41 -2.63 6.76 -92.71 -0.63 -3.26 16 30 H 0.09 -0.20 8.14 -2.39 -0.02 -0.22 16 31 H 0.10 -0.45 8.07 -2.38 -0.02 -0.47 16 32 H 0.18 0.38 8.06 -2.91 -0.02 0.36 16 33 H 0.21 -1.65 8.06 -2.91 -0.02 -1.67 16 34 H 0.43 -3.32 7.53 -92.71 -0.70 -4.02 16 35 H 0.10 -0.62 6.64 -2.39 -0.02 -0.64 16 36 H 0.08 -0.10 8.14 -2.38 -0.02 -0.12 16 37 H 0.15 -1.04 6.40 -2.91 -0.02 -1.06 16 38 H 0.13 -1.00 7.96 -2.39 -0.02 -1.01 16 39 H 0.39 -3.05 8.70 -74.06 -0.64 -3.69 16 40 H -0.28 0.63 7.11 99.48 0.71 1.34 16 41 H -0.31 -0.88 7.11 99.48 0.71 -0.18 16 42 H 0.16 -1.56 4.85 -2.91 -0.01 -1.57 16 43 H 0.16 -1.20 6.30 -2.91 -0.02 -1.22 16 Total: 0.00 -28.33 356.92 -0.49 -28.81 By element: Atomic # 1 Polarization: -17.47 SS G_CDS: -0.84 Total: -18.31 kcal Atomic # 6 Polarization: 6.80 SS G_CDS: 6.13 Total: 12.93 kcal Atomic # 7 Polarization: -3.86 SS G_CDS: -5.57 Total: -9.43 kcal Atomic # 8 Polarization: -9.37 SS G_CDS: -2.24 Total: -11.61 kcal Atomic # 14 Polarization: -4.44 SS G_CDS: 2.04 Total: -2.39 kcal Total: -28.33 -0.49 -28.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14772358_12496546.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.355 kcal (2) G-P(sol) polarization free energy of solvation -28.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.812 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds