Wall clock time and date at job start Sun Mar 7 2021 04:32:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86297 * 109.46853 * 2 1 4 4 C 1.50692 * 109.47088 * 120.00454 * 2 1 3 5 5 C 1.37811 * 119.94473 * 14.99964 * 4 2 1 6 6 C 1.39677 * 119.88260 * 180.02562 * 5 4 2 7 7 C 1.47723 * 120.11927 * 180.02562 * 6 5 4 8 8 O 1.21572 * 119.99882 * 359.97438 * 7 6 5 9 9 N 1.34780 * 119.99655 * 179.97438 * 7 6 5 10 10 C 1.46505 * 119.99266 * 179.97438 * 9 7 6 11 11 H 1.08993 * 112.85532 * 334.67505 * 10 9 7 12 12 C 1.53784 * 113.60899 * 105.87182 * 10 9 7 13 13 C 1.53950 * 87.02257 * 139.94808 * 12 10 9 14 14 H 1.08998 * 113.53580 * 89.18347 * 13 12 10 15 15 C 1.50695 * 113.74666 * 220.05632 * 13 12 10 16 16 N 1.30499 * 125.65478 * 192.28857 * 15 13 12 17 17 C 1.34126 * 109.25637 * 179.89152 * 16 15 13 18 18 C 1.34673 * 108.02425 * 0.36943 * 17 16 15 19 19 N 1.35054 * 125.64735 * 12.59275 * 15 13 12 20 20 C 1.53781 * 87.11050 * 334.63464 * 13 12 10 21 21 C 1.39635 * 119.76139 * 359.97438 * 6 5 4 22 22 C 1.37860 * 119.87850 * 0.28030 * 21 6 5 23 23 C 1.38631 * 120.11626 * 359.46546 * 22 21 6 24 24 F 1.35108 * 119.87890 * 180.28488 * 23 22 21 25 25 H 0.96696 * 114.00472 * 59.99577 * 1 2 3 26 26 H 1.09005 * 109.46903 * 240.00043 * 2 1 3 27 27 H 1.48494 * 110.00252 * 298.68005 * 3 2 1 28 28 H 1.48493 * 110.00154 * 60.00588 * 3 2 1 29 29 H 1.07998 * 120.06022 * 0.02562 * 5 4 2 30 30 H 0.96996 * 119.99958 * 0.02562 * 9 7 6 31 31 H 1.09004 * 113.61135 * 254.52390 * 12 10 9 32 32 H 1.08999 * 113.61641 * 25.42825 * 12 10 9 33 33 H 1.08008 * 125.98773 * 180.11311 * 17 16 15 34 34 H 1.07999 * 126.59005 * 179.74462 * 18 17 16 35 35 H 0.96998 * 126.39415 * 359.97438 * 19 15 13 36 36 H 1.08999 * 113.61760 * 270.81704 * 20 13 12 37 37 H 1.09003 * 113.69707 * 139.92188 * 20 13 12 38 38 H 1.08002 * 120.05631 * 179.97438 * 21 6 5 39 39 H 1.08004 * 119.93618 * 179.70104 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7105 1.2303 5 6 1.0731 -1.4947 1.9704 6 6 1.5400 -2.1522 3.1109 7 6 0.6247 -2.9946 3.9077 8 8 -0.5372 -3.1162 3.5714 9 7 1.0779 -3.6284 5.0075 10 6 0.1700 -4.4634 5.7980 11 1 -0.8743 -4.1696 5.6934 12 6 0.4066 -5.9722 5.6174 13 6 0.1631 -6.1100 7.1312 14 1 -0.8837 -6.2677 7.3911 15 6 1.0879 -7.0886 7.8080 16 7 0.9484 -7.5542 9.0191 17 6 1.9533 -8.4017 9.2856 18 6 2.7501 -8.4574 8.2013 19 7 2.2016 -7.6246 7.2637 20 6 0.6155 -4.6458 7.2585 21 6 2.8752 -2.0113 3.4945 22 6 3.7238 -1.2201 2.7499 23 6 3.2564 -0.5740 1.6159 24 9 4.0937 0.1956 0.8865 25 1 -0.3934 0.4417 -0.7649 26 1 1.7923 -0.5139 -0.8900 27 1 1.5878 2.4585 -1.2242 28 1 1.5615 2.4678 1.2085 29 1 0.0415 -1.6007 1.6691 30 1 2.0049 -3.5310 5.2759 31 1 -0.3508 -6.4627 5.0059 32 1 1.4234 -6.2215 5.3142 33 1 2.1001 -8.9414 10.2096 34 1 3.6493 -9.0455 8.0928 35 1 2.5481 -7.4515 6.3744 36 1 1.6896 -4.5318 7.4048 37 1 0.0276 -4.0659 7.9700 38 1 3.2411 -2.5172 4.3757 39 1 4.7555 -1.1065 3.0485 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14772358_12496548.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:32:36 Heat of formation + Delta-G solvation = 8.147819 kcal Electronic energy + Delta-G solvation = -25420.768973 eV Core-core repulsion = 21439.483259 eV Total energy + Delta-G solvation = -3981.285715 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 318.117 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -50.27837 -43.08873 -41.52486 -40.14131 -39.03569 -37.80837 -34.94728 -33.45056 -32.88444 -31.95318 -30.48987 -27.21492 -26.82834 -26.40412 -24.60809 -23.23597 -22.61933 -21.78930 -21.46966 -20.75189 -19.16153 -18.98056 -18.78222 -18.30552 -17.51606 -17.15190 -16.79715 -16.46297 -16.26491 -16.02129 -15.99361 -15.77076 -15.29122 -15.07697 -14.91844 -14.62269 -14.35208 -14.17785 -14.11078 -14.02969 -13.58256 -13.52685 -13.18688 -12.92865 -12.51549 -12.47434 -12.04630 -11.91914 -11.72366 -11.19230 -11.05294 -11.02323 -11.00349 -10.25951 -9.99120 -9.69011 -9.33838 -4.85892 -0.50046 0.04132 1.10048 1.15839 1.47507 1.60604 1.85398 1.95928 2.13812 2.23935 2.58304 2.86798 3.06469 3.26749 3.37561 3.44288 3.59812 3.60312 3.74628 3.77674 3.97043 4.02761 4.17438 4.26545 4.31707 4.48800 4.55567 4.58025 4.61031 4.67572 4.78390 4.82816 4.85423 4.91888 4.97406 5.03848 5.07742 5.11188 5.18598 5.44187 5.63463 5.79997 6.41129 6.48408 6.50351 7.08474 7.15196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.556 6.556 2 C -0.082 4.082 3 Si 0.739 3.261 4 C -0.133 4.133 5 C -0.032 4.032 6 C -0.158 4.158 7 C 0.560 3.440 8 O -0.578 6.578 9 N -0.697 5.697 10 C 0.124 3.876 11 H 0.104 0.896 12 C -0.139 4.139 13 C -0.024 4.024 14 H 0.117 0.883 15 C 0.213 3.787 16 N -0.534 5.534 17 C -0.065 4.065 18 C -0.041 4.041 19 N -0.555 5.555 20 C -0.119 4.119 21 C -0.046 4.046 22 C -0.141 4.141 23 C 0.117 3.883 24 F -0.099 7.099 25 H 0.399 0.601 26 H 0.105 0.895 27 H -0.273 1.273 28 H -0.302 1.302 29 H 0.126 0.874 30 H 0.417 0.583 31 H 0.079 0.921 32 H 0.102 0.898 33 H 0.176 0.824 34 H 0.211 0.789 35 H 0.432 0.568 36 H 0.103 0.897 37 H 0.086 0.914 38 H 0.177 0.823 39 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.607 -1.044 -1.553 9.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.366 6.366 2 C -0.190 4.190 3 Si 0.643 3.357 4 C -0.134 4.134 5 C -0.052 4.052 6 C -0.161 4.161 7 C 0.349 3.651 8 O -0.458 6.458 9 N -0.349 5.349 10 C 0.019 3.981 11 H 0.122 0.878 12 C -0.178 4.178 13 C -0.045 4.045 14 H 0.135 0.865 15 C -0.051 4.051 16 N -0.254 5.254 17 C -0.212 4.212 18 C -0.175 4.175 19 N -0.160 5.160 20 C -0.158 4.158 21 C -0.064 4.064 22 C -0.159 4.159 23 C 0.098 3.902 24 F -0.078 7.078 25 H 0.250 0.750 26 H 0.122 0.878 27 H -0.199 1.199 28 H -0.230 1.230 29 H 0.144 0.856 30 H 0.257 0.743 31 H 0.098 0.902 32 H 0.120 0.880 33 H 0.193 0.807 34 H 0.227 0.773 35 H 0.273 0.727 36 H 0.121 0.879 37 H 0.105 0.895 38 H 0.195 0.805 39 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 8.076 -0.419 -0.675 8.115 hybrid contribution -0.375 -0.196 -1.378 1.442 sum 7.701 -0.614 -2.053 7.994 Atomic orbital electron populations 1.86472 1.17878 1.80965 1.51315 1.24717 0.84794 1.11345 0.98161 0.94247 0.91663 0.72250 0.77522 1.19444 0.93104 1.01659 0.99161 1.20829 1.00002 0.92085 0.92236 1.20007 0.95526 1.02582 0.97998 1.18424 0.86819 0.78957 0.80919 1.90804 1.19859 1.64488 1.70679 1.45697 1.14790 1.48468 1.25923 1.22422 0.95517 0.89474 0.90680 0.87779 1.23569 1.03767 0.96144 0.94332 1.20787 0.97840 0.91430 0.94422 0.86497 1.23070 0.90646 1.00711 0.90717 1.70177 1.26509 1.14046 1.14675 1.22747 0.94435 1.02733 1.01242 1.23282 1.03297 1.00631 0.90300 1.43233 1.21148 1.35084 1.16520 1.23360 1.03246 0.93978 0.95233 1.21534 0.90144 0.95423 0.99315 1.21451 1.03345 0.97779 0.93322 1.17744 0.86471 0.93704 0.92319 1.91200 1.69354 1.71218 1.76003 0.74956 0.87789 1.19889 1.22960 0.85584 0.74344 0.90211 0.88016 0.80671 0.77272 0.72703 0.87891 0.89500 0.80540 0.79875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -2.07 11.48 -148.98 -1.71 -3.78 16 2 C -0.08 -0.08 2.95 71.23 0.21 0.13 16 3 Si 0.74 0.63 29.57 68.60 2.03 2.66 16 4 C -0.13 -0.31 5.15 -19.86 -0.10 -0.41 16 5 C -0.03 -0.18 8.90 22.52 0.20 0.02 16 6 C -0.16 -0.13 5.87 -20.09 -0.12 -0.25 16 7 C 0.56 2.01 7.77 86.75 0.67 2.69 16 8 O -0.58 -7.80 15.96 -3.94 -0.06 -7.87 16 9 N -0.70 3.32 5.31 -443.00 -2.35 0.97 16 10 C 0.12 -0.45 4.21 45.52 0.19 -0.26 16 11 H 0.10 0.12 7.50 -2.39 -0.02 0.11 16 12 C -0.14 0.78 7.37 31.18 0.23 1.01 16 13 C -0.02 0.07 4.29 -10.96 -0.05 0.02 16 14 H 0.12 -0.13 8.14 -2.39 -0.02 -0.15 16 15 C 0.21 0.33 7.37 138.12 1.02 1.34 16 16 N -0.53 -4.47 11.25 -188.12 -2.12 -6.58 16 17 C -0.06 -0.26 11.87 83.52 0.99 0.73 16 18 C -0.04 0.10 12.04 83.09 1.00 1.10 16 19 N -0.55 2.25 5.94 -186.27 -1.11 1.14 16 20 C -0.12 0.67 7.38 31.12 0.23 0.90 16 21 C -0.05 0.34 9.54 22.52 0.21 0.56 16 22 C -0.14 1.05 10.01 22.27 0.22 1.28 16 23 C 0.12 -0.28 6.67 22.47 0.15 -0.13 16 24 F -0.10 0.39 13.71 44.97 0.62 1.01 16 25 H 0.40 -1.77 8.74 -74.06 -0.65 -2.42 16 26 H 0.10 -0.33 7.96 -2.38 -0.02 -0.35 16 27 H -0.27 -1.03 7.11 99.48 0.71 -0.33 16 28 H -0.30 -2.80 7.11 99.48 0.71 -2.09 16 29 H 0.13 1.37 6.72 -2.91 -0.02 1.35 16 30 H 0.42 -5.09 6.74 -92.71 -0.62 -5.72 16 31 H 0.08 -0.27 8.14 -2.39 -0.02 -0.29 16 32 H 0.10 -1.01 6.66 -2.39 -0.02 -1.03 16 33 H 0.18 0.17 8.06 -2.91 -0.02 0.14 16 34 H 0.21 -2.08 8.06 -2.91 -0.02 -2.10 16 35 H 0.43 -4.63 7.55 -92.71 -0.70 -5.33 16 36 H 0.10 -0.86 8.06 -2.39 -0.02 -0.88 16 37 H 0.09 -0.39 8.14 -2.39 -0.02 -0.41 16 38 H 0.18 -2.85 6.40 -2.91 -0.02 -2.87 16 39 H 0.18 -2.58 8.06 -2.91 -0.02 -2.60 16 Total: 0.00 -28.25 333.75 -0.44 -28.69 By element: Atomic # 1 Polarization: -24.18 SS G_CDS: -0.80 Total: -24.98 kcal Atomic # 6 Polarization: 3.67 SS G_CDS: 5.07 Total: 8.73 kcal Atomic # 7 Polarization: 1.11 SS G_CDS: -5.58 Total: -4.47 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: -1.77 Total: -11.65 kcal Atomic # 9 Polarization: 0.39 SS G_CDS: 0.62 Total: 1.01 kcal Atomic # 14 Polarization: 0.63 SS G_CDS: 2.03 Total: 2.66 kcal Total: -28.25 -0.44 -28.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14772358_12496548.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.837 kcal (2) G-P(sol) polarization free energy of solvation -28.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds