Wall clock time and date at job start Sun Mar 7 2021 04:32:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86301 * 109.47206 * 2 1 4 4 C 1.50704 * 109.47221 * 119.99823 * 2 1 3 5 5 C 1.34833 * 125.65107 * 65.29854 * 4 2 1 6 6 C 1.40795 * 107.04981 * 180.15919 * 5 4 2 7 7 C 1.36109 * 106.73337 * 359.56997 * 6 5 4 8 8 C 1.47561 * 125.94610 * 180.29927 * 7 6 5 9 9 C 1.39921 * 119.95683 * 359.72818 * 8 7 6 10 10 C 1.36433 * 120.28025 * 179.75878 * 9 8 7 11 11 C 1.39880 * 120.18184 * 0.51472 * 10 9 8 12 12 C 1.47296 * 120.04114 * 179.72023 * 11 10 9 13 13 O 1.21620 * 119.99710 * 180.02562 * 12 11 10 14 14 N 1.34769 * 119.99974 * 0.02562 * 12 11 10 15 15 C 1.46508 * 119.99632 * 180.02562 * 14 12 11 16 16 H 1.08993 * 112.85377 * 336.20285 * 15 14 12 17 17 C 1.53783 * 113.61076 * 107.50927 * 15 14 12 18 18 C 1.53780 * 87.08014 * 139.98182 * 17 15 14 19 19 H 1.08996 * 113.69503 * 89.12687 * 18 17 15 20 20 C 1.50706 * 113.61070 * 220.01488 * 18 17 15 21 21 N 1.30495 * 125.64813 * 192.52043 * 20 18 17 22 22 C 1.34134 * 109.25601 * 180.02562 * 21 20 18 23 23 C 1.34669 * 108.01881 * 359.97438 * 22 21 20 24 24 N 1.35046 * 125.64934 * 12.21796 * 20 18 17 25 25 C 1.53781 * 87.08312 * 334.56228 * 18 17 15 26 26 C 1.40400 * 119.90712 * 359.74033 * 11 10 9 27 27 O 1.35686 * 120.13324 * 180.02562 * 26 11 10 28 28 C 1.38270 * 119.72922 * 359.97438 * 26 11 10 29 29 O 1.34226 * 125.65161 * 244.97880 * 4 2 1 30 30 H 0.96697 * 113.99755 * 300.00378 * 1 2 3 31 31 H 1.08999 * 109.47490 * 239.99782 * 2 1 3 32 32 H 1.48500 * 110.00201 * 178.67987 * 3 2 1 33 33 H 1.48500 * 110.00036 * 299.99940 * 3 2 1 34 34 H 1.07995 * 126.47634 * 359.97438 * 5 4 2 35 35 H 1.08002 * 126.63743 * 179.83926 * 6 5 4 36 36 H 1.08004 * 119.86052 * 0.02562 * 9 8 7 37 37 H 1.07995 * 119.90838 * 180.23485 * 10 9 8 38 38 H 0.97003 * 120.00766 * 0.02562 * 14 12 11 39 39 H 1.09004 * 113.61231 * 254.53087 * 17 15 14 40 40 H 1.09001 * 113.61811 * 25.42600 * 17 15 14 41 41 H 1.07994 * 125.98892 * 180.02562 * 22 21 20 42 42 H 1.08000 * 126.59122 * 179.97438 * 23 22 21 43 43 H 0.97001 * 126.39707 * 359.97438 * 24 20 18 44 44 H 1.09000 * 113.61873 * 270.89348 * 25 18 17 45 45 H 1.08997 * 113.61553 * 139.98270 * 25 18 17 46 46 H 0.96705 * 113.99498 * 269.97533 * 27 26 11 47 47 H 1.08003 * 120.09654 * 180.02562 * 28 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 1.2305 5 6 1.7617 -2.0192 1.5067 6 6 2.3802 -2.2627 2.7478 7 6 2.9080 -1.0784 3.1618 8 6 3.6580 -0.8543 4.4127 9 6 3.8743 -1.9165 5.2974 10 6 4.5711 -1.7179 6.4535 11 6 5.0650 -0.4474 6.7674 12 6 5.8115 -0.2351 8.0193 13 8 6.2403 0.8699 8.2917 14 7 6.0195 -1.2654 8.8628 15 6 6.7615 -1.0540 10.1083 16 1 7.4273 -0.1922 10.0634 17 6 5.8766 -1.0863 11.3656 18 6 7.0140 -1.8622 12.0504 19 1 7.7491 -1.2222 12.5384 20 6 6.5326 -2.9817 12.9371 21 7 7.2613 -3.6357 13.7998 22 6 6.5034 -4.5601 14.4083 23 6 5.2577 -4.4754 13.9038 24 7 5.2742 -3.4704 12.9746 25 6 7.4367 -2.3266 10.6467 26 6 4.8479 0.6251 5.8878 27 8 5.3254 1.8593 6.1875 28 6 4.1463 0.4183 4.7144 29 8 2.6271 -0.1463 2.2303 30 1 -0.3933 0.4417 0.7650 31 1 1.7924 -0.5139 -0.8899 32 1 3.5346 1.7703 0.0321 33 1 1.5615 2.4679 -1.2085 34 1 1.2459 -2.7431 0.8934 35 1 2.4304 -3.2076 3.2685 36 1 3.4918 -2.8988 5.0621 37 1 4.7378 -2.5428 7.1302 38 1 5.6779 -2.1469 8.6455 39 1 5.6970 -0.1022 11.7984 40 1 4.9634 -1.6685 11.2420 41 1 6.8341 -5.2507 15.1698 42 1 4.4080 -5.0813 14.1817 43 1 4.5229 -3.1673 12.4411 44 1 6.9499 -3.2479 10.3265 45 1 8.5165 -2.3438 10.4991 46 1 4.7092 2.4075 6.6924 47 1 3.9762 1.2390 4.0332 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14772358_12807986.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:32:49 Heat of formation + Delta-G solvation = 33.625142 kcal Electronic energy + Delta-G solvation = -33115.883654 eV Core-core repulsion = 28427.576270 eV Total energy + Delta-G solvation = -4688.307384 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 382.141 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -43.80028 -43.12171 -41.67183 -40.41299 -38.92898 -38.14986 -37.86454 -34.90371 -34.25837 -33.46115 -33.31424 -31.40262 -30.80864 -30.30330 -27.35579 -26.98907 -26.08095 -24.43628 -24.15478 -22.80598 -22.45148 -22.11114 -21.63397 -21.37152 -20.91775 -19.73761 -19.11455 -18.77806 -18.57433 -17.77338 -17.51102 -17.32401 -16.81898 -16.66172 -16.35474 -16.14982 -15.96468 -15.82334 -15.77106 -15.43898 -15.03276 -14.94041 -14.68250 -14.44797 -14.29652 -14.09140 -14.04895 -13.93307 -13.76800 -13.70514 -13.66795 -13.43460 -12.91640 -12.82660 -12.57896 -12.15918 -12.15065 -11.89649 -11.82778 -11.19600 -10.98484 -10.97519 -10.84010 -10.79459 -10.65035 -10.18660 -10.03792 -9.36237 -9.08674 -5.11412 -0.86184 0.03331 0.59084 1.04897 1.06414 1.34113 1.40024 1.70389 1.86840 1.88613 1.92990 2.12181 2.17559 2.55634 2.93708 3.16033 3.16934 3.26593 3.29040 3.44309 3.47804 3.54156 3.65029 3.78486 3.82297 3.85071 3.87874 4.07772 4.09035 4.21087 4.29659 4.35089 4.44636 4.46792 4.49155 4.53628 4.60160 4.66103 4.70223 4.74380 4.77058 4.81508 4.91567 4.98564 5.02501 5.09944 5.14631 5.31437 5.35393 5.39752 5.78627 5.89753 6.30932 6.34005 6.34097 6.62573 7.12385 7.14137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.530 6.530 2 C -0.028 4.028 3 Si 0.700 3.300 4 C -0.044 4.044 5 C -0.174 4.174 6 C -0.177 4.177 7 C 0.022 3.978 8 C 0.032 3.968 9 C -0.117 4.117 10 C -0.064 4.064 11 C -0.167 4.167 12 C 0.560 3.440 13 O -0.514 6.514 14 N -0.719 5.719 15 C 0.128 3.872 16 H 0.126 0.874 17 C -0.150 4.150 18 C -0.022 4.022 19 H 0.126 0.874 20 C 0.219 3.781 21 N -0.485 5.485 22 C -0.026 4.026 23 C -0.057 4.057 24 N -0.566 5.566 25 C -0.133 4.133 26 C 0.180 3.820 27 O -0.474 6.474 28 C -0.141 4.141 29 O -0.161 6.161 30 H 0.384 0.616 31 H 0.134 0.866 32 H -0.252 1.252 33 H -0.245 1.245 34 H 0.155 0.845 35 H 0.156 0.844 36 H 0.138 0.862 37 H 0.135 0.865 38 H 0.399 0.601 39 H 0.086 0.914 40 H 0.080 0.920 41 H 0.171 0.829 42 H 0.178 0.822 43 H 0.417 0.583 44 H 0.087 0.913 45 H 0.089 0.911 46 H 0.399 0.601 47 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.968 -2.644 0.588 6.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.335 6.335 2 C -0.139 4.139 3 Si 0.599 3.401 4 C -0.095 4.095 5 C -0.193 4.193 6 C -0.196 4.196 7 C -0.028 4.028 8 C 0.031 3.969 9 C -0.135 4.135 10 C -0.083 4.083 11 C -0.171 4.171 12 C 0.348 3.652 13 O -0.390 6.390 14 N -0.371 5.371 15 C 0.023 3.977 16 H 0.143 0.857 17 C -0.190 4.190 18 C -0.042 4.042 19 H 0.144 0.856 20 C -0.045 4.045 21 N -0.204 5.204 22 C -0.174 4.174 23 C -0.190 4.190 24 N -0.170 5.170 25 C -0.172 4.172 26 C 0.133 3.867 27 O -0.285 6.285 28 C -0.159 4.159 29 O -0.058 6.058 30 H 0.232 0.768 31 H 0.151 0.849 32 H -0.176 1.176 33 H -0.169 1.169 34 H 0.173 0.827 35 H 0.174 0.826 36 H 0.156 0.844 37 H 0.153 0.847 38 H 0.235 0.765 39 H 0.105 0.895 40 H 0.098 0.902 41 H 0.188 0.812 42 H 0.195 0.805 43 H 0.255 0.745 44 H 0.105 0.895 45 H 0.108 0.892 46 H 0.258 0.742 47 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -3.633 -1.303 -0.272 3.869 hybrid contribution -1.883 -1.475 -0.256 2.406 sum -5.516 -2.778 -0.527 6.198 Atomic orbital electron populations 1.86568 1.16083 1.81725 1.49155 1.24428 0.85250 1.11311 0.92878 0.94278 0.81719 0.76796 0.87270 1.23008 1.00447 0.93870 0.92132 1.21585 1.04086 0.95666 0.97986 1.21911 1.01983 0.98372 0.97308 1.20316 1.03828 0.87576 0.91049 1.17754 0.95549 0.93688 0.89913 1.20703 1.00262 0.98696 0.93824 1.20796 0.95427 0.95479 0.96613 1.20483 1.04879 0.95102 0.96589 1.18010 0.79630 0.84666 0.82900 1.90853 1.49427 1.23533 1.75195 1.45881 1.57562 1.12177 1.21515 1.22481 0.93938 0.99753 0.81519 0.85670 1.23580 0.97241 1.01646 0.96496 1.20765 0.98959 0.92508 0.92015 0.85602 1.22872 0.81417 0.99936 1.00241 1.70256 1.32772 1.08538 1.08867 1.22429 0.90431 1.01055 1.03495 1.22819 1.01645 0.96967 0.97587 1.43264 1.11736 1.28893 1.33087 1.23434 1.02723 0.97514 0.93557 1.18282 0.91238 0.85788 0.91385 1.84786 1.44591 1.22704 1.76428 1.21603 0.98701 0.97546 0.98065 1.83938 1.57539 1.37872 1.26458 0.76814 0.84870 1.17629 1.16934 0.82688 0.82635 0.84377 0.84728 0.76538 0.89497 0.90169 0.81152 0.80482 0.74526 0.89458 0.89237 0.74201 0.83747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 0.49 12.88 -35.23 -0.45 0.03 16 2 C -0.03 0.03 2.98 36.01 0.11 0.14 16 3 Si 0.70 -0.84 32.11 -169.99 -5.46 -6.29 16 4 C -0.04 -0.01 6.21 -35.51 -0.22 -0.23 16 5 C -0.17 -0.02 10.78 -39.82 -0.43 -0.45 16 6 C -0.18 0.07 10.26 -39.38 -0.40 -0.33 16 7 C 0.02 0.01 7.02 -36.55 -0.26 -0.25 16 8 C 0.03 -0.01 5.87 -104.95 -0.62 -0.63 16 9 C -0.12 0.25 9.48 -39.60 -0.38 -0.12 16 10 C -0.06 0.16 9.47 -39.62 -0.38 -0.21 16 11 C -0.17 -0.01 5.89 -104.79 -0.62 -0.63 16 12 C 0.56 0.65 7.75 -12.58 -0.10 0.55 16 13 O -0.51 -2.46 14.74 -16.69 -0.25 -2.71 16 14 N -0.72 1.45 5.30 -54.13 -0.29 1.17 16 15 C 0.13 -0.25 4.24 -67.11 -0.28 -0.53 16 16 H 0.13 -0.04 7.46 -51.93 -0.39 -0.43 16 17 C -0.15 0.43 7.35 -25.92 -0.19 0.23 16 18 C -0.02 0.03 4.29 -90.96 -0.39 -0.36 16 19 H 0.13 -0.17 8.14 -51.93 -0.42 -0.60 16 20 C 0.22 0.18 7.36 -155.41 -1.14 -0.96 16 21 N -0.49 -1.82 11.25 -10.81 -0.12 -1.94 16 22 C -0.03 -0.05 11.87 -17.81 -0.21 -0.26 16 23 C -0.06 0.04 12.04 -16.56 -0.20 -0.16 16 24 N -0.57 0.77 5.94 -10.22 -0.06 0.71 16 25 C -0.13 0.33 7.38 -25.91 -0.19 0.14 16 26 C 0.18 0.18 6.71 -38.76 -0.26 -0.08 16 27 O -0.47 -0.83 11.56 -40.72 -0.47 -1.30 16 28 C -0.14 -0.03 9.65 -39.06 -0.38 -0.41 16 29 O -0.16 -0.13 8.79 4.72 0.04 -0.09 16 30 H 0.38 -1.80 8.70 45.56 0.40 -1.40 16 31 H 0.13 -0.18 7.96 -51.93 -0.41 -0.60 16 32 H -0.25 -0.49 7.11 56.52 0.40 -0.09 16 33 H -0.25 -0.31 7.11 56.52 0.40 0.09 16 34 H 0.16 -0.16 8.06 -52.49 -0.42 -0.58 16 35 H 0.16 -0.43 7.24 -52.49 -0.38 -0.81 16 36 H 0.14 -0.60 6.95 -52.48 -0.36 -0.97 16 37 H 0.14 -0.76 6.37 -52.49 -0.33 -1.10 16 38 H 0.40 -1.85 6.73 -40.82 -0.27 -2.12 16 39 H 0.09 -0.20 8.14 -51.93 -0.42 -0.62 16 40 H 0.08 -0.33 6.64 -51.93 -0.34 -0.68 16 41 H 0.17 -0.01 8.06 -52.49 -0.42 -0.43 16 42 H 0.18 -0.65 8.06 -52.49 -0.42 -1.07 16 43 H 0.42 -1.77 7.53 -40.82 -0.31 -2.08 16 44 H 0.09 -0.26 8.07 -51.93 -0.42 -0.68 16 45 H 0.09 -0.19 8.14 -51.93 -0.42 -0.61 16 46 H 0.40 -0.86 9.06 45.56 0.41 -0.44 16 47 H 0.14 -0.07 7.90 -52.48 -0.41 -0.48 16 LS Contribution 402.61 15.07 6.07 6.07 Total: 0.00 -12.53 402.61 -12.09 -24.61 By element: Atomic # 1 Polarization: -11.14 SS G_CDS: -4.57 Total: -15.70 kcal Atomic # 6 Polarization: 1.98 SS G_CDS: -6.53 Total: -4.55 kcal Atomic # 7 Polarization: 0.40 SS G_CDS: -0.47 Total: -0.07 kcal Atomic # 8 Polarization: -2.94 SS G_CDS: -1.13 Total: -4.07 kcal Atomic # 14 Polarization: -0.84 SS G_CDS: -5.46 Total: -6.29 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -12.53 -12.09 -24.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14772358_12807986.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.239 kcal (2) G-P(sol) polarization free energy of solvation -12.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.614 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds