Wall clock time and date at job start Sun Mar 7 2021 04:33:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42894 * 1 3 3 Si 1.86295 * 109.47596 * 2 1 4 4 C 1.50705 * 109.47136 * 239.99702 * 2 1 3 5 5 C 1.38355 * 120.34950 * 300.30656 * 4 2 1 6 6 C 1.40021 * 118.28731 * 180.23202 * 5 4 2 7 7 C 1.47837 * 120.56072 * 179.73530 * 6 5 4 8 8 O 1.21553 * 119.99896 * 359.72793 * 7 6 5 9 9 N 1.34773 * 120.00410 * 179.72678 * 7 6 5 10 10 C 1.46501 * 120.00122 * 179.97438 * 9 7 6 11 11 H 1.08993 * 112.90929 * 336.25213 * 10 9 7 12 12 C 1.53962 * 113.66387 * 107.55425 * 10 9 7 13 13 C 1.53782 * 87.11063 * 139.88885 * 12 10 9 14 14 H 1.08997 * 113.61225 * 89.18406 * 13 12 10 15 15 C 1.50698 * 113.68885 * 220.07854 * 13 12 10 16 16 N 1.30500 * 125.64804 * 192.22769 * 15 13 12 17 17 C 1.34133 * 109.25606 * 179.88775 * 16 15 13 18 18 C 1.34668 * 108.01887 * 0.37823 * 17 16 15 19 19 N 1.35045 * 125.65309 * 12.53298 * 15 13 12 20 20 C 1.53781 * 87.08260 * 334.63747 * 13 12 10 21 21 C 1.39520 * 118.88279 * 359.46797 * 6 5 4 22 22 N 1.31696 * 120.56641 * 0.26747 * 21 6 5 23 23 C 1.31930 * 121.87981 * 0.02562 * 22 21 6 24 24 H 0.96705 * 113.99876 * 300.00228 * 1 2 3 25 25 H 1.09002 * 109.47183 * 120.00326 * 2 1 3 26 26 H 1.48493 * 110.00556 * 178.67994 * 3 2 1 27 27 H 1.48504 * 109.99693 * 300.00414 * 3 2 1 28 28 H 1.08000 * 120.85840 * 359.97438 * 5 4 2 29 29 H 0.97002 * 120.00080 * 0.02562 * 9 7 6 30 30 H 1.08997 * 113.53543 * 25.33559 * 12 10 9 31 31 H 1.08998 * 113.73879 * 254.47157 * 12 10 9 32 32 H 1.08001 * 125.98687 * 180.11136 * 17 16 15 33 33 H 1.07998 * 126.59264 * 179.74159 * 18 17 16 34 34 H 0.96997 * 126.39415 * 359.97438 * 19 15 13 35 35 H 1.09002 * 113.61445 * 139.98212 * 20 13 12 36 36 H 1.09002 * 113.61408 * 270.79943 * 20 13 12 37 37 H 1.07997 * 119.71841 * 180.29073 * 21 6 5 38 38 H 1.07997 * 119.45865 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2305 5 6 1.5963 -2.0332 -1.4597 6 6 2.0907 -2.6524 -2.6141 7 6 1.7690 -4.0656 -2.9056 8 8 1.0738 -4.7015 -2.1376 9 7 2.2464 -4.6489 -4.0228 10 6 1.9280 -6.0495 -4.3113 11 1 1.6748 -6.6198 -3.4177 12 6 0.9229 -6.2300 -5.4636 13 6 1.7789 -7.4235 -5.9196 14 1 1.4848 -8.3701 -5.4664 15 6 1.9411 -7.5159 -7.4150 16 7 2.4196 -8.5406 -8.0662 17 6 2.4143 -8.2714 -9.3802 18 6 1.9214 -7.0296 -9.5490 19 7 1.6210 -6.5499 -8.3027 20 6 2.9631 -6.7435 -5.2124 21 6 2.8876 -1.9117 -3.4876 22 7 3.1743 -0.6528 -3.2281 23 6 2.7274 -0.0451 -2.1457 24 1 -0.3933 0.4418 0.7651 25 1 1.7923 -0.5139 0.8900 26 1 3.5346 1.7702 0.0321 27 1 1.5615 2.4678 -1.2085 28 1 0.9729 -2.5753 -0.7641 29 1 2.8015 -4.1416 -4.6356 30 1 0.9181 -5.4006 -6.1709 31 1 -0.0772 -6.5107 -5.1336 32 1 2.7508 -8.9328 -10.1649 33 1 1.7890 -6.5115 -10.4873 34 1 1.2479 -5.6788 -8.0957 35 1 3.6104 -7.4391 -4.6782 36 1 3.5168 -6.0557 -5.8514 37 1 3.2722 -2.3745 -4.3843 38 1 2.9871 0.9886 -1.9714 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14772358_13287814.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:33:26 Heat of formation + Delta-G solvation = 62.172887 kcal Electronic energy + Delta-G solvation = -23186.080345 eV Core-core repulsion = 19611.165398 eV Total energy + Delta-G solvation = -3574.914947 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 301.121 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.11888 -42.04929 -40.79731 -39.25581 -37.87003 -35.08147 -33.97359 -33.48213 -33.13256 -30.57122 -27.36166 -26.96731 -26.83007 -25.16305 -23.83369 -22.66576 -21.93695 -21.59068 -20.80288 -19.12763 -19.04469 -18.55225 -18.23426 -17.88073 -17.02686 -16.55553 -16.24907 -16.17641 -15.80563 -15.41774 -15.38047 -14.98544 -14.80083 -14.66816 -14.45988 -14.29149 -14.08062 -13.80794 -13.58629 -13.51962 -12.66779 -12.56775 -12.18448 -12.05857 -11.77011 -11.50584 -11.20512 -11.05693 -11.03173 -10.84881 -10.64358 -10.26896 -10.16415 -9.36676 -4.97588 -0.74656 -0.15247 1.07271 1.21935 1.51508 1.63466 1.82610 1.91438 2.11008 2.20145 2.46975 2.90866 3.16419 3.25606 3.33930 3.39986 3.55180 3.56602 3.60296 3.69658 3.74939 3.93476 4.01408 4.13697 4.23452 4.43532 4.47589 4.53580 4.56297 4.61930 4.70026 4.74353 4.79618 4.82409 4.94930 5.02301 5.13858 5.16394 5.39009 5.77351 6.26934 6.46052 6.46915 6.84201 6.94044 7.12205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.565 6.565 2 C -0.080 4.080 3 Si 0.779 3.221 4 C -0.141 4.141 5 C 0.002 3.998 6 C -0.192 4.192 7 C 0.570 3.430 8 O -0.566 6.566 9 N -0.697 5.697 10 C 0.125 3.875 11 H 0.112 0.888 12 C -0.140 4.140 13 C -0.023 4.023 14 H 0.121 0.879 15 C 0.213 3.787 16 N -0.532 5.532 17 C -0.063 4.063 18 C -0.042 4.042 19 N -0.556 5.556 20 C -0.121 4.121 21 C 0.143 3.857 22 N -0.497 5.497 23 C 0.108 3.892 24 H 0.408 0.592 25 H 0.101 0.899 26 H -0.280 1.280 27 H -0.290 1.290 28 H 0.148 0.852 29 H 0.416 0.584 30 H 0.098 0.902 31 H 0.083 0.917 32 H 0.177 0.823 33 H 0.209 0.791 34 H 0.431 0.569 35 H 0.089 0.911 36 H 0.099 0.901 37 H 0.197 0.803 38 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.002 5.548 1.023 5.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.375 6.375 2 C -0.190 4.190 3 Si 0.684 3.316 4 C -0.143 4.143 5 C -0.024 4.024 6 C -0.197 4.197 7 C 0.356 3.644 8 O -0.445 6.445 9 N -0.348 5.348 10 C 0.021 3.979 11 H 0.130 0.870 12 C -0.180 4.180 13 C -0.044 4.044 14 H 0.139 0.861 15 C -0.052 4.052 16 N -0.253 5.253 17 C -0.210 4.210 18 C -0.177 4.177 19 N -0.161 5.161 20 C -0.160 4.160 21 C -0.016 4.016 22 N -0.204 5.204 23 C -0.047 4.047 24 H 0.260 0.740 25 H 0.119 0.881 26 H -0.206 1.206 27 H -0.218 1.218 28 H 0.166 0.834 29 H 0.254 0.746 30 H 0.117 0.883 31 H 0.102 0.898 32 H 0.194 0.806 33 H 0.226 0.774 34 H 0.272 0.728 35 H 0.107 0.893 36 H 0.118 0.882 37 H 0.214 0.786 38 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 0.895 5.065 0.320 5.153 hybrid contribution -0.662 0.121 -0.394 0.780 sum 0.233 5.186 -0.074 5.191 Atomic orbital electron populations 1.86432 1.16834 1.82607 1.51649 1.24826 0.86306 1.11649 0.96195 0.93846 0.77662 0.74762 0.85345 1.20719 1.00085 0.95026 0.98483 1.21710 0.92647 0.93245 0.94823 1.21087 1.04161 0.95566 0.98888 1.18073 0.79113 0.85819 0.81350 1.90806 1.39311 1.65279 1.49154 1.45725 1.52689 1.13046 1.23366 1.22508 0.96440 0.81249 0.97732 0.87017 1.23578 0.99406 0.97183 0.97784 1.20767 0.98734 1.00450 0.84425 0.86143 1.23110 1.02033 0.85750 0.94291 1.70181 1.21233 1.27583 1.06277 1.22748 1.07478 0.97311 0.93498 1.23277 1.06903 0.97570 0.89931 1.43246 1.49329 1.17036 1.06495 1.23376 0.96229 0.99345 0.97065 1.23490 0.91113 0.88900 0.98062 1.67728 1.22274 1.11291 1.19150 1.22869 0.93056 0.99598 0.89182 0.74029 0.88104 1.20633 1.21766 0.83423 0.74589 0.88348 0.89850 0.80606 0.77393 0.72787 0.89270 0.88238 0.78623 0.82631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 1.05 12.75 -148.98 -1.90 -0.85 16 2 C -0.08 0.21 2.83 71.24 0.20 0.41 16 3 Si 0.78 -3.79 29.82 68.60 2.05 -1.75 16 4 C -0.14 -0.45 5.43 -19.81 -0.11 -0.56 16 5 C 0.00 0.01 9.30 22.73 0.21 0.22 16 6 C -0.19 -0.47 5.89 -20.00 -0.12 -0.59 16 7 C 0.57 1.80 7.78 86.78 0.68 2.47 16 8 O -0.57 -6.37 16.02 -3.88 -0.06 -6.44 16 9 N -0.70 3.02 5.31 -442.62 -2.35 0.67 16 10 C 0.13 -0.50 4.25 45.58 0.19 -0.30 16 11 H 0.11 -0.03 7.47 -2.39 -0.02 -0.04 16 12 C -0.14 0.79 7.36 31.18 0.23 1.01 16 13 C -0.02 0.06 4.29 -11.01 -0.05 0.02 16 14 H 0.12 -0.20 8.14 -2.39 -0.02 -0.22 16 15 C 0.21 0.44 7.36 138.13 1.02 1.45 16 16 N -0.53 -4.68 11.25 -188.13 -2.12 -6.79 16 17 C -0.06 -0.30 11.87 83.52 0.99 0.70 16 18 C -0.04 0.07 12.04 83.09 1.00 1.07 16 19 N -0.56 1.71 5.94 -186.27 -1.11 0.60 16 20 C -0.12 0.66 7.37 31.12 0.23 0.88 16 21 C 0.14 -0.06 10.71 85.02 0.91 0.85 16 22 N -0.50 -2.23 10.35 -194.76 -2.01 -4.24 16 23 C 0.11 0.47 9.84 84.71 0.83 1.31 16 24 H 0.41 -5.10 8.74 -74.05 -0.65 -5.75 16 25 H 0.10 -0.66 7.96 -2.39 -0.02 -0.68 16 26 H -0.28 0.02 7.11 99.48 0.71 0.73 16 27 H -0.29 -0.69 7.11 99.48 0.71 0.02 16 28 H 0.15 0.81 7.74 -2.91 -0.02 0.79 16 29 H 0.42 -4.36 6.79 -92.71 -0.63 -4.99 16 30 H 0.10 -0.91 6.65 -2.39 -0.02 -0.92 16 31 H 0.08 -0.33 8.14 -2.39 -0.02 -0.35 16 32 H 0.18 0.26 8.06 -2.91 -0.02 0.24 16 33 H 0.21 -1.82 8.06 -2.91 -0.02 -1.85 16 34 H 0.43 -4.07 7.54 -92.71 -0.70 -4.77 16 35 H 0.09 -0.42 8.14 -2.39 -0.02 -0.43 16 36 H 0.10 -0.73 8.07 -2.39 -0.02 -0.75 16 37 H 0.20 -1.77 6.42 -2.91 -0.02 -1.79 16 38 H 0.16 0.40 4.88 -2.91 -0.01 0.39 16 Total: 0.00 -28.17 324.78 -2.08 -30.25 By element: Atomic # 1 Polarization: -19.60 SS G_CDS: -0.79 Total: -20.39 kcal Atomic # 6 Polarization: 2.72 SS G_CDS: 6.22 Total: 8.94 kcal Atomic # 7 Polarization: -2.18 SS G_CDS: -7.59 Total: -9.77 kcal Atomic # 8 Polarization: -5.32 SS G_CDS: -1.96 Total: -7.29 kcal Atomic # 14 Polarization: -3.79 SS G_CDS: 2.05 Total: -1.75 kcal Total: -28.17 -2.08 -30.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14772358_13287814.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.422 kcal (2) G-P(sol) polarization free energy of solvation -28.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds