Wall clock time and date at job start Sun Mar 7 2021 04:34:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86307 * 109.47027 * 2 1 4 4 C 1.50706 * 109.47174 * 240.00266 * 2 1 3 5 5 C 1.38264 * 119.94244 * 299.99775 * 4 2 1 6 6 C 1.38145 * 120.05437 * 179.97438 * 5 4 2 7 7 C 1.38734 * 119.94237 * 0.25588 * 6 5 4 8 8 O 1.35904 * 120.05053 * 179.71805 * 7 6 5 9 9 C 1.42903 * 116.99671 * 179.97438 * 8 7 6 10 10 C 1.52991 * 109.47072 * 180.02562 * 9 8 7 11 11 C 1.50704 * 109.47498 * 180.02562 * 10 9 8 12 12 O 1.21280 * 119.99151 * 0.02562 * 11 10 9 13 13 N 1.34772 * 120.00235 * 179.97438 * 11 10 9 14 14 C 1.46504 * 119.99553 * 180.02562 * 13 11 10 15 15 H 1.08994 * 112.85360 * 336.19662 * 14 13 11 16 16 C 1.53782 * 113.61334 * 107.50712 * 14 13 11 17 17 C 1.53782 * 87.08091 * 139.97833 * 16 14 13 18 18 H 1.08998 * 113.61627 * 89.11520 * 17 16 14 19 19 C 1.50701 * 113.61348 * 220.01895 * 17 16 14 20 20 N 1.30502 * 125.64988 * 192.51984 * 19 17 16 21 21 C 1.34126 * 109.25564 * 179.97438 * 20 19 17 22 22 C 1.34669 * 108.02229 * 0.02562 * 21 20 19 23 23 N 1.35042 * 125.64824 * 12.21592 * 19 17 16 24 24 C 1.53781 * 113.61012 * 205.00180 * 14 13 11 25 25 C 1.38734 * 119.88948 * 359.51611 * 7 6 5 26 26 C 1.38137 * 119.94186 * 0.45767 * 25 7 6 27 27 H 0.96700 * 113.99821 * 299.99411 * 1 2 3 28 28 H 1.08999 * 109.47810 * 119.99738 * 2 1 3 29 29 H 1.48495 * 109.99954 * 178.68565 * 3 2 1 30 30 H 1.48505 * 109.99969 * 300.00347 * 3 2 1 31 31 H 1.07999 * 119.97244 * 359.95432 * 5 4 2 32 32 H 1.08002 * 120.02435 * 179.97438 * 6 5 4 33 33 H 1.09002 * 109.47137 * 300.00908 * 9 8 7 34 34 H 1.09001 * 109.46597 * 60.00188 * 9 8 7 35 35 H 1.09002 * 109.47773 * 300.00387 * 10 9 8 36 36 H 1.09001 * 109.47363 * 60.00526 * 10 9 8 37 37 H 0.97000 * 119.99963 * 0.02562 * 13 11 10 38 38 H 1.08996 * 113.61270 * 254.52411 * 16 14 13 39 39 H 1.09000 * 113.61257 * 25.42662 * 16 14 13 40 40 H 1.07997 * 125.98921 * 180.02562 * 21 20 19 41 41 H 1.08001 * 126.59612 * 179.97438 * 22 21 20 42 42 H 0.96999 * 126.40227 * 359.97438 * 23 19 17 43 43 H 1.08996 * 113.62013 * 334.56774 * 24 14 13 44 44 H 1.09003 * 113.61823 * 105.47442 * 24 14 13 45 45 H 1.08000 * 120.02383 * 180.23084 * 25 7 6 46 46 H 1.08007 * 119.97511 * 179.76987 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 1.5966 -2.0341 -1.4482 6 6 2.0554 -2.6874 -2.5757 7 6 2.8570 -2.0156 -3.4872 8 8 3.3143 -2.6578 -4.5942 9 6 4.1341 -1.9037 -5.4893 10 6 4.5493 -2.7872 -6.6674 11 6 5.4145 -1.9922 -7.6112 12 8 5.6738 -0.8333 -7.3653 13 7 5.9007 -2.5695 -8.7277 14 6 6.7422 -1.7967 -9.6448 15 1 6.5772 -0.7221 -9.5670 16 6 8.2262 -2.1984 -9.6057 17 6 8.2299 -2.0334 -11.1346 18 1 8.4731 -1.0233 -11.4642 19 6 9.0249 -3.0925 -11.8541 20 7 9.3783 -3.0564 -13.1098 21 6 10.0745 -4.1641 -13.4053 22 6 10.1552 -4.9153 -12.2906 23 7 9.4944 -4.2332 -11.3047 24 6 6.7198 -2.3203 -11.0905 25 6 3.1875 -0.6860 -3.2689 26 6 2.7257 -0.0371 -2.1402 27 1 -0.3933 0.4416 0.7651 28 1 1.7924 -0.5138 0.8900 29 1 3.5345 1.7704 0.0320 30 1 1.5613 2.4680 -1.2085 31 1 0.9763 -2.5579 -0.7360 32 1 1.7940 -3.7215 -2.7450 33 1 3.5738 -1.0450 -5.8592 34 1 5.0237 -1.5577 -4.9630 35 1 5.1094 -3.6461 -6.2979 36 1 3.6595 -3.1328 -7.1936 37 1 5.6936 -3.4965 -8.9241 38 1 8.8597 -1.4787 -9.0874 39 1 8.3923 -3.2242 -9.2767 40 1 10.4965 -4.4104 -14.3685 41 1 10.6499 -5.8703 -12.1921 42 1 9.3827 -4.5172 -10.3839 43 1 6.4741 -3.3794 -11.1677 44 1 6.1373 -1.6991 -11.7710 45 1 3.8083 -0.1598 -3.9789 46 1 2.9858 0.9969 -1.9678 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14772358_4549602.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:34:14 Heat of formation + Delta-G solvation = 8.101133 kcal Electronic energy + Delta-G solvation = -27940.748713 eV Core-core repulsion = 23799.157519 eV Total energy + Delta-G solvation = -4141.591194 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -43.12379 -41.53565 -41.09006 -39.53927 -39.03099 -37.25136 -34.80718 -33.50156 -33.40567 -32.19690 -31.63556 -30.53922 -27.07253 -26.85146 -26.17193 -25.22241 -23.67246 -22.64400 -22.20217 -21.75424 -21.52757 -20.71701 -19.63936 -19.06511 -18.37396 -17.98694 -17.56895 -17.33600 -17.09561 -16.77270 -16.54810 -16.07719 -15.89014 -15.81551 -15.54951 -15.09982 -14.97717 -14.77753 -14.65221 -14.50200 -14.23809 -14.00797 -13.96106 -13.70515 -13.58996 -13.49176 -13.02520 -12.89832 -12.51516 -12.49627 -12.06581 -12.04545 -11.97472 -11.80700 -11.75649 -11.10231 -11.05497 -11.03788 -10.31908 -10.19676 -10.17972 -9.37356 -9.32180 -4.98352 0.10631 0.16363 1.06393 1.29303 1.44380 1.60050 1.61403 1.95097 2.09960 2.16147 2.42261 2.49923 3.25906 3.34945 3.36969 3.49916 3.55756 3.58712 3.70226 3.73148 3.82115 3.87198 3.92585 3.98079 4.10089 4.22257 4.22938 4.33868 4.42433 4.48466 4.53370 4.55247 4.57299 4.60742 4.63283 4.69542 4.75159 4.80375 4.82874 4.93732 5.04537 5.05011 5.11192 5.15994 5.35446 5.43542 5.57845 5.76655 6.18454 6.40249 6.46517 6.92304 7.09608 7.11583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.563 6.563 2 C -0.069 4.069 3 Si 0.769 3.231 4 C -0.130 4.130 5 C -0.054 4.054 6 C -0.152 4.152 7 C 0.124 3.876 8 O -0.316 6.316 9 C 0.070 3.930 10 C -0.132 4.132 11 C 0.521 3.479 12 O -0.583 6.583 13 N -0.703 5.703 14 C 0.125 3.875 15 H 0.105 0.895 16 C -0.139 4.139 17 C -0.025 4.025 18 H 0.117 0.883 19 C 0.211 3.789 20 N -0.533 5.533 21 C -0.064 4.064 22 C -0.042 4.042 23 N -0.555 5.555 24 C -0.121 4.121 25 C -0.211 4.211 26 C -0.103 4.103 27 H 0.404 0.596 28 H 0.098 0.902 29 H -0.291 1.291 30 H -0.303 1.303 31 H 0.153 0.847 32 H 0.153 0.847 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.131 0.869 36 H 0.128 0.872 37 H 0.420 0.580 38 H 0.079 0.921 39 H 0.100 0.900 40 H 0.177 0.823 41 H 0.210 0.790 42 H 0.431 0.569 43 H 0.099 0.901 44 H 0.085 0.915 45 H 0.136 0.864 46 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.500 -5.763 4.715 7.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.373 6.373 2 C -0.179 4.179 3 Si 0.677 3.323 4 C -0.130 4.130 5 C -0.072 4.072 6 C -0.170 4.170 7 C 0.079 3.921 8 O -0.229 6.229 9 C -0.005 4.005 10 C -0.171 4.171 11 C 0.309 3.691 12 O -0.463 6.463 13 N -0.354 5.354 14 C 0.020 3.980 15 H 0.123 0.877 16 C -0.178 4.178 17 C -0.046 4.046 18 H 0.135 0.865 19 C -0.053 4.053 20 N -0.253 5.253 21 C -0.211 4.211 22 C -0.176 4.176 23 N -0.160 5.160 24 C -0.160 4.160 25 C -0.229 4.229 26 C -0.121 4.121 27 H 0.255 0.745 28 H 0.116 0.884 29 H -0.219 1.219 30 H -0.231 1.231 31 H 0.171 0.829 32 H 0.171 0.829 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.149 0.851 36 H 0.146 0.854 37 H 0.258 0.742 38 H 0.098 0.902 39 H 0.118 0.882 40 H 0.194 0.806 41 H 0.227 0.773 42 H 0.273 0.727 43 H 0.118 0.882 44 H 0.103 0.897 45 H 0.153 0.847 46 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 0.058 -4.251 3.258 5.356 hybrid contribution 0.598 -1.115 0.078 1.267 sum 0.656 -5.366 3.336 6.352 Atomic orbital electron populations 1.86436 1.17138 1.82330 1.51435 1.24662 0.85873 1.10232 0.97172 0.94591 0.77154 0.75947 0.84625 1.19657 1.00565 0.95499 0.97280 1.21076 0.96539 0.93222 0.96379 1.20793 1.00116 1.01948 0.94129 1.19131 0.94648 0.90911 0.87453 1.85960 1.64993 1.40379 1.31607 1.22480 0.93908 0.94324 0.89812 1.21444 1.02043 0.99500 0.94126 1.20652 0.79452 0.86875 0.82148 1.90751 1.60863 1.19342 1.75375 1.45788 1.51225 1.16352 1.22081 1.22372 0.89581 0.97478 0.88607 0.87682 1.23530 0.97048 1.03486 0.93752 1.20779 0.93861 0.95924 0.93988 0.86490 1.23109 1.01986 0.90294 0.89931 1.70180 1.16779 1.24631 1.13740 1.22749 1.04759 0.92855 1.00727 1.23289 1.03976 1.01723 0.88602 1.43235 1.42108 1.17285 1.13388 1.23359 0.94194 1.03143 0.95298 1.21316 1.06170 0.94966 1.00486 1.20801 0.98286 0.98708 0.94308 0.74518 0.88418 1.21903 1.23134 0.82923 0.82913 0.92078 0.91768 0.85096 0.85378 0.74231 0.90183 0.88160 0.80624 0.77290 0.72739 0.88217 0.89668 0.84658 0.86719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -0.09 12.74 -148.98 -1.90 -1.98 16 2 C -0.07 -0.03 2.81 71.24 0.20 0.17 16 3 Si 0.77 -0.11 29.78 68.60 2.04 1.93 16 4 C -0.13 -0.81 5.42 -19.85 -0.11 -0.92 16 5 C -0.05 -0.24 9.60 22.25 0.21 -0.02 16 6 C -0.15 -0.70 9.99 22.37 0.22 -0.47 16 7 C 0.12 0.84 6.69 22.51 0.15 0.99 16 8 O -0.32 -1.38 10.14 -92.47 -0.94 -2.32 16 9 C 0.07 0.12 4.03 71.98 0.29 0.41 16 10 C -0.13 0.67 6.07 29.85 0.18 0.85 16 11 C 0.52 -0.39 7.83 87.66 0.69 0.30 16 12 O -0.58 -5.21 15.58 -3.03 -0.05 -5.26 16 13 N -0.70 4.60 5.35 -440.04 -2.36 2.24 16 14 C 0.12 -0.55 4.24 45.52 0.19 -0.36 16 15 H 0.11 0.01 7.46 -2.39 -0.02 0.00 16 16 C -0.14 0.83 7.35 31.12 0.23 1.06 16 17 C -0.02 0.06 4.29 -11.01 -0.05 0.02 16 18 H 0.12 -0.12 8.14 -2.39 -0.02 -0.14 16 19 C 0.21 0.42 7.36 138.13 1.02 1.44 16 20 N -0.53 -4.67 11.25 -188.13 -2.12 -6.79 16 21 C -0.06 -0.28 11.87 83.52 0.99 0.71 16 22 C -0.04 0.08 12.04 83.09 1.00 1.08 16 23 N -0.56 1.93 5.94 -186.26 -1.11 0.82 16 24 C -0.12 0.65 7.38 31.12 0.23 0.88 16 25 C -0.21 -1.67 9.04 22.36 0.20 -1.47 16 26 C -0.10 -0.87 8.66 22.25 0.19 -0.68 16 27 H 0.40 -4.25 8.74 -74.06 -0.65 -4.90 16 28 H 0.10 -0.42 7.96 -2.39 -0.02 -0.44 16 29 H -0.29 -1.61 7.11 99.48 0.71 -0.90 16 30 H -0.30 -2.51 7.11 99.48 0.71 -1.80 16 31 H 0.15 0.04 8.06 -2.91 -0.02 0.02 16 32 H 0.15 0.06 8.06 -2.91 -0.02 0.03 16 33 H 0.06 0.24 7.61 -2.39 -0.02 0.22 16 34 H 0.06 0.21 7.63 -2.39 -0.02 0.19 16 35 H 0.13 -1.25 8.14 -2.39 -0.02 -1.27 16 36 H 0.13 -1.11 8.14 -2.39 -0.02 -1.13 16 37 H 0.42 -5.42 8.73 -92.71 -0.81 -6.23 16 38 H 0.08 -0.32 8.14 -2.39 -0.02 -0.34 16 39 H 0.10 -1.00 6.64 -2.39 -0.02 -1.02 16 40 H 0.18 0.23 8.06 -2.91 -0.02 0.21 16 41 H 0.21 -1.95 8.06 -2.91 -0.02 -1.97 16 42 H 0.43 -4.35 7.53 -92.71 -0.70 -5.05 16 43 H 0.10 -0.74 8.07 -2.39 -0.02 -0.76 16 44 H 0.08 -0.35 8.14 -2.39 -0.02 -0.37 16 45 H 0.14 0.86 6.30 -2.91 -0.02 0.84 16 46 H 0.12 0.93 4.87 -2.91 -0.01 0.91 16 Total: 0.00 -29.62 384.16 -1.65 -31.27 By element: Atomic # 1 Polarization: -22.83 SS G_CDS: -1.07 Total: -23.90 kcal Atomic # 6 Polarization: -1.86 SS G_CDS: 5.85 Total: 3.98 kcal Atomic # 7 Polarization: 1.86 SS G_CDS: -5.58 Total: -3.72 kcal Atomic # 8 Polarization: -6.67 SS G_CDS: -2.88 Total: -9.56 kcal Atomic # 14 Polarization: -0.11 SS G_CDS: 2.04 Total: 1.93 kcal Total: -29.62 -1.65 -31.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14772358_4549602.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.372 kcal (2) G-P(sol) polarization free energy of solvation -29.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.271 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds