Wall clock time and date at job start Sun Mar 7 2021 04:34:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42905 * 1 3 3 Si 1.86290 * 109.47310 * 2 1 4 4 C 1.50702 * 109.46895 * 120.00480 * 2 1 3 5 5 C 1.38249 * 119.96774 * 244.99509 * 4 2 1 6 6 C 1.38286 * 120.11189 * 180.02562 * 5 4 2 7 7 C 1.38121 * 120.05712 * 359.97438 * 6 5 4 8 8 C 1.38758 * 119.94129 * 359.97438 * 7 6 5 9 9 O 1.35904 * 120.05400 * 180.02562 * 8 7 6 10 10 C 1.42899 * 116.99988 * 359.97438 * 9 8 7 11 11 C 1.52998 * 109.47163 * 180.02562 * 10 9 8 12 12 C 1.50703 * 109.47159 * 180.02562 * 11 10 9 13 13 O 1.21278 * 120.00152 * 359.97438 * 12 11 10 14 14 N 1.34773 * 120.00031 * 180.02562 * 12 11 10 15 15 C 1.46497 * 120.00221 * 179.97438 * 14 12 11 16 16 H 1.09003 * 112.90387 * 23.74512 * 15 14 12 17 17 C 1.53781 * 113.61630 * 154.99518 * 15 14 12 18 18 C 1.53781 * 87.08070 * 139.98148 * 17 15 14 19 19 H 1.09002 * 113.61445 * 89.11830 * 18 17 15 20 20 C 1.50697 * 113.61630 * 219.93625 * 18 17 15 21 21 N 1.30497 * 125.65046 * 263.16409 * 20 18 17 22 22 C 1.34133 * 109.25663 * 179.88801 * 21 20 18 23 23 C 1.34663 * 108.01784 * 0.37454 * 22 21 20 24 24 N 1.35042 * 125.64963 * 83.46676 * 20 18 17 25 25 C 1.53786 * 87.17350 * 334.52830 * 18 17 15 26 26 C 1.38164 * 119.97795 * 65.25307 * 4 2 1 27 27 H 0.96698 * 113.99791 * 299.99889 * 1 2 3 28 28 H 1.08997 * 109.46616 * 239.99736 * 2 1 3 29 29 H 1.48498 * 110.00182 * 178.68282 * 3 2 1 30 30 H 1.48505 * 110.00101 * 299.99984 * 3 2 1 31 31 H 1.08007 * 119.94454 * 0.02562 * 5 4 2 32 32 H 1.08004 * 119.97299 * 179.97438 * 6 5 4 33 33 H 1.07997 * 120.02893 * 179.97438 * 7 6 5 34 34 H 1.09003 * 109.47090 * 60.00049 * 10 9 8 35 35 H 1.09004 * 109.47291 * 300.00124 * 10 9 8 36 36 H 1.09003 * 109.47128 * 60.00011 * 11 10 9 37 37 H 1.08995 * 109.47027 * 300.00393 * 11 10 9 38 38 H 0.97001 * 119.99917 * 359.97438 * 14 12 11 39 39 H 1.08999 * 113.61181 * 25.43203 * 17 15 14 40 40 H 1.08998 * 113.61680 * 254.52755 * 17 15 14 41 41 H 1.07998 * 125.98752 * 180.11058 * 22 21 20 42 42 H 1.08007 * 126.58712 * 179.81115 * 23 22 21 43 43 H 0.97003 * 126.39950 * 359.97438 * 24 20 18 44 44 H 1.08992 * 113.61675 * 140.02412 * 25 18 17 45 45 H 1.09000 * 113.60973 * 270.92699 * 25 18 17 46 46 H 1.07999 * 120.02393 * 359.97438 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7563 0.0000 4 6 1.9313 -0.7105 1.2304 5 6 2.6388 -0.0118 2.1909 6 6 3.1015 -0.6609 3.3209 7 6 2.8574 -2.0095 3.4928 8 6 2.1466 -2.7128 2.5307 9 8 1.9046 -4.0396 2.6978 10 6 2.4119 -4.6468 3.8878 11 6 2.0443 -6.1319 3.8992 12 6 2.5788 -6.7721 5.1544 13 8 3.1935 -6.1062 5.9603 14 7 2.3744 -8.0848 5.3810 15 6 2.8944 -8.7073 6.6009 16 1 3.0489 -7.9925 7.4092 17 6 2.1191 -9.9642 7.0299 18 6 3.4793 -10.5846 7.3900 19 1 3.7938 -10.3831 8.4140 20 6 3.5966 -12.0401 7.0176 21 7 3.3989 -13.0491 7.8211 22 6 3.5883 -14.1940 7.1485 23 6 3.9240 -13.8825 5.8821 24 7 3.9293 -12.5162 5.7984 25 6 4.1019 -9.6319 6.3557 26 6 1.6891 -2.0608 1.3952 27 1 -0.3933 0.4417 0.7650 28 1 1.7923 -0.5139 -0.8900 29 1 3.5346 1.7702 0.0321 30 1 1.5616 2.4678 -1.2085 31 1 2.8304 1.0429 2.0586 32 1 3.6544 -0.1130 4.0696 33 1 3.2193 -2.5160 4.3752 34 1 1.9766 -4.1576 4.7592 35 1 3.4965 -4.5411 3.9158 36 1 2.4800 -6.6207 3.0277 37 1 0.9599 -6.2380 3.8709 38 1 1.8830 -8.6175 4.7362 39 1 1.6138 -10.4679 6.2058 40 1 1.4704 -9.8044 7.8911 41 1 3.4930 -15.1909 7.5529 42 1 4.1457 -14.5772 5.0854 43 1 4.1340 -11.9886 5.0106 44 1 5.0528 -9.2041 6.6729 45 1 4.1377 -10.0451 5.3476 46 1 1.1396 -2.6069 0.6427 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14772358_4549614.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:34:17 Heat of formation + Delta-G solvation = 6.649581 kcal Electronic energy + Delta-G solvation = -27962.894960 eV Core-core repulsion = 23821.240823 eV Total energy + Delta-G solvation = -4141.654138 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -43.10888 -41.45433 -41.02899 -39.49953 -38.99258 -37.26327 -34.76656 -33.47501 -33.23292 -32.47265 -30.95470 -30.43625 -27.16636 -26.83155 -26.47182 -24.89726 -23.68641 -22.67348 -22.19056 -21.66657 -21.47932 -20.68823 -19.35932 -19.03476 -18.12948 -17.72500 -17.49670 -17.11836 -17.10181 -16.86312 -16.49841 -16.20143 -15.94242 -15.80502 -15.43967 -15.04951 -14.93432 -14.85441 -14.60285 -14.41785 -14.23591 -14.15650 -13.93187 -13.56706 -13.45199 -13.25470 -12.91724 -12.83448 -12.50432 -12.35773 -12.04954 -12.03561 -11.81805 -11.73692 -11.63832 -11.06418 -11.04771 -11.01601 -10.48607 -10.14697 -9.95653 -9.36054 -9.28218 -4.98257 0.18798 0.38075 1.07686 1.29808 1.48423 1.65420 1.69313 1.97240 2.11349 2.18180 2.48785 2.65600 3.28986 3.37225 3.50471 3.55892 3.58033 3.66570 3.75300 3.83830 3.88814 3.92634 4.01093 4.09284 4.22735 4.24133 4.26967 4.37441 4.48797 4.50263 4.55540 4.57628 4.62003 4.64146 4.67240 4.75077 4.77662 4.85644 4.96213 4.96654 5.06795 5.18027 5.24881 5.37045 5.43038 5.46712 5.69572 5.77832 6.31659 6.43943 6.47842 6.75649 7.12873 7.13049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.555 6.555 2 C -0.078 4.078 3 Si 0.784 3.216 4 C -0.085 4.085 5 C -0.155 4.155 6 C -0.075 4.075 7 C -0.211 4.211 8 C 0.117 3.883 9 O -0.325 6.325 10 C 0.073 3.927 11 C -0.134 4.134 12 C 0.522 3.478 13 O -0.581 6.581 14 N -0.704 5.704 15 C 0.126 3.874 16 H 0.107 0.893 17 C -0.121 4.121 18 C -0.025 4.025 19 H 0.118 0.882 20 C 0.212 3.788 21 N -0.533 5.533 22 C -0.064 4.064 23 C -0.042 4.042 24 N -0.555 5.555 25 C -0.139 4.139 26 C -0.142 4.142 27 H 0.396 0.604 28 H 0.106 0.894 29 H -0.285 1.285 30 H -0.298 1.298 31 H 0.150 0.850 32 H 0.154 0.846 33 H 0.137 0.863 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.126 0.874 37 H 0.126 0.874 38 H 0.419 0.581 39 H 0.099 0.901 40 H 0.085 0.915 41 H 0.176 0.824 42 H 0.210 0.790 43 H 0.431 0.569 44 H 0.080 0.920 45 H 0.099 0.901 46 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.609 -0.397 -2.015 2.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.363 6.363 2 C -0.187 4.187 3 Si 0.690 3.310 4 C -0.086 4.086 5 C -0.173 4.173 6 C -0.093 4.093 7 C -0.229 4.229 8 C 0.071 3.929 9 O -0.239 6.239 10 C -0.002 4.002 11 C -0.173 4.173 12 C 0.310 3.690 13 O -0.460 6.460 14 N -0.356 5.356 15 C 0.021 3.979 16 H 0.125 0.875 17 C -0.161 4.161 18 C -0.046 4.046 19 H 0.136 0.864 20 C -0.053 4.053 21 N -0.254 5.254 22 C -0.211 4.211 23 C -0.176 4.176 24 N -0.160 5.160 25 C -0.179 4.179 26 C -0.161 4.161 27 H 0.246 0.754 28 H 0.123 0.877 29 H -0.212 1.212 30 H -0.227 1.227 31 H 0.167 0.833 32 H 0.172 0.828 33 H 0.155 0.845 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.145 0.855 37 H 0.144 0.856 38 H 0.257 0.743 39 H 0.117 0.883 40 H 0.104 0.896 41 H 0.194 0.806 42 H 0.227 0.773 43 H 0.272 0.728 44 H 0.099 0.901 45 H 0.117 0.883 46 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 0.054 0.197 -1.679 1.691 hybrid contribution 0.398 -1.161 -1.302 1.789 sum 0.452 -0.964 -2.981 3.165 Atomic orbital electron populations 1.86473 1.17142 1.82248 1.50459 1.25294 0.85371 1.11245 0.96803 0.93573 0.77822 0.74884 0.84748 1.20244 0.98032 0.93387 0.96915 1.21174 1.00852 1.00522 0.94738 1.21266 0.97147 0.93441 0.97455 1.21559 1.04140 0.96605 1.00642 1.19139 0.95795 0.82997 0.94926 1.85952 1.74629 1.20308 1.43015 1.22458 0.99157 0.93116 0.85506 1.21450 1.05433 0.93471 0.96989 1.20616 0.78577 0.82430 0.87379 1.90745 1.42767 1.63573 1.48952 1.45799 1.57208 1.09071 1.23485 1.22418 0.94287 0.93147 0.88078 0.87488 1.23360 0.95813 0.94034 1.02845 1.20794 0.98931 0.83490 1.01371 0.86430 1.23134 1.03403 0.96553 0.82187 1.70182 1.22182 0.99048 1.33943 1.22744 1.07943 0.97878 0.92515 1.23280 1.08903 0.84360 1.01104 1.43231 1.52839 1.07416 1.12552 1.23582 0.99192 0.95732 0.99352 1.20327 1.04086 0.94404 0.97303 0.75429 0.87660 1.21216 1.22664 0.83269 0.82849 0.84492 0.91580 0.91696 0.85547 0.85613 0.74331 0.88306 0.89596 0.80648 0.77343 0.72751 0.90131 0.88302 0.85589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -0.69 12.84 -148.98 -1.91 -2.60 16 2 C -0.08 -0.04 2.80 71.24 0.20 0.16 16 3 Si 0.78 -1.66 29.80 68.60 2.04 0.39 16 4 C -0.09 -0.15 5.35 -19.88 -0.11 -0.25 16 5 C -0.16 0.13 8.67 22.28 0.19 0.32 16 6 C -0.08 0.03 10.04 22.25 0.22 0.26 16 7 C -0.21 -0.50 9.04 22.37 0.20 -0.30 16 8 C 0.12 0.56 6.69 22.51 0.15 0.71 16 9 O -0.32 -1.22 10.14 -92.47 -0.94 -2.16 16 10 C 0.07 0.01 4.03 71.98 0.29 0.30 16 11 C -0.13 0.76 6.07 29.85 0.18 0.94 16 12 C 0.52 -0.91 7.83 87.66 0.69 -0.23 16 13 O -0.58 -4.27 15.58 -3.02 -0.05 -4.32 16 14 N -0.70 5.08 5.36 -439.61 -2.35 2.73 16 15 C 0.13 -0.66 4.25 45.61 0.19 -0.46 16 16 H 0.11 -0.11 7.47 -2.39 -0.02 -0.12 16 17 C -0.12 0.73 7.38 31.12 0.23 0.96 16 18 C -0.03 0.08 4.28 -11.01 -0.05 0.03 16 19 H 0.12 -0.19 8.14 -2.39 -0.02 -0.21 16 20 C 0.21 0.36 7.36 138.13 1.02 1.38 16 21 N -0.53 -4.54 11.25 -188.14 -2.12 -6.65 16 22 C -0.06 -0.27 11.87 83.52 0.99 0.72 16 23 C -0.04 0.09 12.04 83.08 1.00 1.09 16 24 N -0.56 2.04 5.94 -186.27 -1.11 0.93 16 25 C -0.14 0.90 7.38 31.21 0.23 1.13 16 26 C -0.14 -0.67 9.63 22.36 0.22 -0.45 16 27 H 0.40 -2.76 8.70 -74.06 -0.64 -3.40 16 28 H 0.11 0.19 7.96 -2.39 -0.02 0.17 16 29 H -0.29 -0.73 7.11 99.48 0.71 -0.02 16 30 H -0.30 -1.57 7.11 99.48 0.71 -0.86 16 31 H 0.15 -0.87 4.90 -2.91 -0.01 -0.88 16 32 H 0.15 -0.84 8.06 -2.91 -0.02 -0.86 16 33 H 0.14 0.11 6.30 -2.91 -0.02 0.09 16 34 H 0.07 0.09 7.62 -2.39 -0.02 0.07 16 35 H 0.06 0.09 7.62 -2.38 -0.02 0.07 16 36 H 0.13 -1.19 8.14 -2.39 -0.02 -1.21 16 37 H 0.13 -1.13 8.14 -2.39 -0.02 -1.15 16 38 H 0.42 -5.56 8.73 -92.71 -0.81 -6.37 16 39 H 0.10 -0.78 8.07 -2.39 -0.02 -0.80 16 40 H 0.09 -0.42 8.14 -2.39 -0.02 -0.44 16 41 H 0.18 0.21 8.06 -2.91 -0.02 0.19 16 42 H 0.21 -1.95 8.06 -2.91 -0.02 -1.98 16 43 H 0.43 -4.43 7.54 -92.71 -0.70 -5.13 16 44 H 0.08 -0.37 8.14 -2.39 -0.02 -0.39 16 45 H 0.10 -1.02 6.64 -2.39 -0.02 -1.03 16 46 H 0.13 0.65 8.06 -2.91 -0.02 0.63 16 Total: 0.00 -27.39 384.30 -1.65 -29.04 By element: Atomic # 1 Polarization: -22.59 SS G_CDS: -1.07 Total: -23.66 kcal Atomic # 6 Polarization: 0.45 SS G_CDS: 5.85 Total: 6.30 kcal Atomic # 7 Polarization: 2.59 SS G_CDS: -5.58 Total: -2.99 kcal Atomic # 8 Polarization: -6.18 SS G_CDS: -2.90 Total: -9.08 kcal Atomic # 14 Polarization: -1.66 SS G_CDS: 2.04 Total: 0.39 kcal Total: -27.39 -1.65 -29.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14772358_4549614.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.691 kcal (2) G-P(sol) polarization free energy of solvation -27.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds