Wall clock time and date at job start Sun Mar 7 2021 04:34:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42904 * 1 3 3 Si 1.86297 * 109.47128 * 2 1 4 4 C 1.50697 * 109.47224 * 120.00539 * 2 1 3 5 5 C 1.38246 * 119.96827 * 244.99875 * 4 2 1 6 6 C 1.38286 * 120.11000 * 180.02562 * 5 4 2 7 7 C 1.38127 * 120.05926 * 359.96002 * 6 5 4 8 8 C 1.38762 * 119.93876 * 0.02562 * 7 6 5 9 9 O 1.35899 * 120.05047 * 180.02562 * 8 7 6 10 10 C 1.42896 * 117.00224 * 0.02562 * 9 8 7 11 11 C 1.53002 * 109.46985 * 179.97438 * 10 9 8 12 12 C 1.52999 * 109.47134 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.47528 * 180.02562 * 12 11 10 14 14 O 1.21292 * 119.99414 * 359.97438 * 13 12 11 15 15 N 1.34774 * 120.00561 * 180.02562 * 13 12 11 16 16 C 1.46497 * 120.00074 * 179.97438 * 15 13 12 17 17 H 1.08996 * 112.85261 * 23.80547 * 16 15 13 18 18 C 1.53779 * 113.61403 * 154.99865 * 16 15 13 19 19 C 1.53778 * 87.08275 * 140.06421 * 18 16 15 20 20 H 1.09002 * 113.61552 * 89.20262 * 19 18 16 21 21 C 1.50700 * 113.61371 * 220.02002 * 19 18 16 22 22 N 1.30499 * 125.65164 * 264.99816 * 21 19 18 23 23 C 1.34128 * 109.26095 * 180.02562 * 22 21 19 24 24 C 1.34675 * 108.01655 * 0.02562 * 23 22 21 25 25 N 1.35046 * 125.65379 * 84.99997 * 21 19 18 26 26 C 1.53780 * 87.08044 * 334.56580 * 19 18 16 27 27 C 1.38164 * 119.97366 * 65.25396 * 4 2 1 28 28 H 0.96706 * 113.99373 * 299.99589 * 1 2 3 29 29 H 1.09003 * 109.46749 * 240.00294 * 2 1 3 30 30 H 1.48503 * 110.00220 * 300.00375 * 3 2 1 31 31 H 1.48506 * 109.99804 * 61.32165 * 3 2 1 32 32 H 1.07999 * 119.94512 * 359.97438 * 5 4 2 33 33 H 1.08001 * 119.97294 * 179.97438 * 6 5 4 34 34 H 1.07998 * 120.03423 * 180.02562 * 7 6 5 35 35 H 1.09001 * 109.47485 * 60.00012 * 10 9 8 36 36 H 1.09007 * 109.46871 * 299.99459 * 10 9 8 37 37 H 1.09009 * 109.47208 * 59.99956 * 11 10 9 38 38 H 1.08995 * 109.47289 * 299.99644 * 11 10 9 39 39 H 1.09000 * 109.47322 * 59.99685 * 12 11 10 40 40 H 1.09005 * 109.47441 * 300.00399 * 12 11 10 41 41 H 0.97003 * 119.99809 * 359.97438 * 15 13 12 42 42 H 1.09007 * 113.61337 * 25.51311 * 18 16 15 43 43 H 1.09003 * 113.69536 * 254.62763 * 18 16 15 44 44 H 1.08002 * 125.99298 * 180.26684 * 23 22 21 45 45 H 1.07999 * 126.58848 * 180.02562 * 24 23 22 46 46 H 0.97001 * 126.39490 * 359.97438 * 25 21 19 47 47 H 1.09001 * 113.61184 * 139.97720 * 26 19 18 48 48 H 1.08997 * 113.61964 * 270.88366 * 26 19 18 49 49 H 1.07996 * 120.03215 * 359.97438 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7105 1.2304 5 6 2.6388 -0.0118 2.1908 6 6 3.1016 -0.6609 3.3208 7 6 2.8573 -2.0095 3.4928 8 6 2.1472 -2.7130 2.5303 9 8 1.9051 -4.0397 2.6975 10 6 2.4105 -4.6464 3.8884 11 6 2.0419 -6.1313 3.9003 12 6 2.5835 -6.7811 5.1752 13 6 2.2211 -8.2438 5.1867 14 8 1.5910 -8.7196 4.2659 15 7 2.5960 -9.0230 6.2204 16 6 2.2431 -10.4448 6.2317 17 1 2.0645 -10.8445 5.2336 18 6 3.1914 -11.3081 7.0804 19 6 1.9445 -12.0743 7.5525 20 1 1.6850 -12.9204 6.9162 21 6 1.9730 -12.4302 9.0166 22 7 2.3793 -13.5655 9.5156 23 6 2.2633 -13.5284 10.8513 24 6 1.7656 -12.3246 11.1930 25 7 1.5823 -11.6271 10.0296 26 6 1.1412 -10.7998 7.2439 27 6 1.6891 -2.0607 1.3950 28 1 -0.3932 0.4417 0.7652 29 1 1.7923 -0.5138 -0.8901 30 1 1.5615 2.4679 -1.2084 31 1 1.5879 2.4585 1.2243 32 1 2.8310 1.0427 2.0581 33 1 3.6544 -0.1130 4.0695 34 1 3.2185 -2.5160 4.3756 35 1 1.9738 -4.1571 4.7590 36 1 3.4950 -4.5407 3.9180 37 1 2.4783 -6.6210 3.0297 38 1 0.9574 -6.2367 3.8709 39 1 2.1476 -6.2915 6.0460 40 1 3.6681 -6.6757 5.2043 41 1 3.0996 -8.6424 6.9570 42 1 3.6913 -10.7550 7.8757 43 1 3.8787 -11.9140 6.4898 44 1 2.5268 -14.3231 11.5336 45 1 1.5534 -11.9759 12.1929 46 1 1.2359 -10.7248 9.9480 47 1 0.1724 -10.9950 6.7840 48 1 1.0804 -10.1078 8.0839 49 1 1.1397 -2.6070 0.6426 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14772358_4549616.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:34:22 Heat of formation + Delta-G solvation = 2.873129 kcal Electronic energy + Delta-G solvation = -29497.413128 eV Core-core repulsion = 25200.057612 eV Total energy + Delta-G solvation = -4297.355516 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 358.173 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -43.13552 -41.35702 -41.13524 -39.52892 -39.13050 -37.37571 -34.97961 -34.71695 -33.45899 -32.49023 -31.30548 -30.63647 -28.60525 -27.01265 -26.89516 -25.98346 -23.80945 -23.53719 -22.63705 -21.95821 -21.71395 -21.53385 -20.78495 -19.22486 -19.14091 -18.22577 -17.87535 -17.57042 -17.27927 -17.12552 -16.85824 -16.65416 -16.38794 -16.11852 -15.84247 -15.49555 -15.25441 -15.06744 -14.85855 -14.70402 -14.67008 -14.28555 -14.09729 -14.04503 -13.77945 -13.66345 -13.48012 -13.31095 -13.07957 -12.78877 -12.58006 -12.44580 -12.30936 -12.15518 -11.90470 -11.85744 -11.71141 -11.54597 -11.00410 -10.99060 -10.93733 -10.62771 -10.21808 -9.94656 -9.37529 -9.23965 -4.95770 0.20524 0.41318 1.03448 1.26597 1.50376 1.59535 1.78858 1.95605 2.06992 2.15986 2.28465 2.66615 3.14867 3.24958 3.38039 3.43633 3.47068 3.61265 3.62343 3.72926 3.76079 3.81298 3.84986 3.99076 4.07545 4.08006 4.11529 4.18780 4.21141 4.32528 4.34077 4.39627 4.44772 4.47854 4.50651 4.54567 4.64525 4.66434 4.72530 4.79315 4.89870 4.96853 4.98824 5.10070 5.13469 5.26935 5.34563 5.36574 5.43922 5.69244 5.77309 6.30956 6.32559 6.40014 6.40430 7.08897 7.12719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.528 6.528 2 C -0.077 4.077 3 Si 0.691 3.309 4 C -0.078 4.078 5 C -0.157 4.157 6 C -0.074 4.074 7 C -0.205 4.205 8 C 0.132 3.868 9 O -0.311 6.311 10 C 0.060 3.940 11 C -0.106 4.106 12 C -0.138 4.138 13 C 0.515 3.485 14 O -0.531 6.531 15 N -0.723 5.723 16 C 0.126 3.874 17 H 0.124 0.876 18 C -0.132 4.132 19 C -0.022 4.022 20 H 0.126 0.874 21 C 0.219 3.781 22 N -0.485 5.485 23 C -0.026 4.026 24 C -0.057 4.057 25 N -0.566 5.566 26 C -0.150 4.150 27 C -0.125 4.125 28 H 0.376 0.624 29 H 0.120 0.880 30 H -0.257 1.257 31 H -0.260 1.260 32 H 0.129 0.871 33 H 0.130 0.870 34 H 0.129 0.871 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.098 0.902 40 H 0.099 0.901 41 H 0.401 0.599 42 H 0.087 0.913 43 H 0.088 0.912 44 H 0.171 0.829 45 H 0.178 0.822 46 H 0.416 0.584 47 H 0.086 0.914 48 H 0.080 0.920 49 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.021 3.882 5.893 8.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.334 6.334 2 C -0.187 4.187 3 Si 0.592 3.408 4 C -0.079 4.079 5 C -0.175 4.175 6 C -0.092 4.092 7 C -0.223 4.223 8 C 0.086 3.914 9 O -0.225 6.225 10 C -0.016 4.016 11 C -0.144 4.144 12 C -0.179 4.179 13 C 0.302 3.698 14 O -0.407 6.407 15 N -0.374 5.374 16 C 0.021 3.979 17 H 0.142 0.858 18 C -0.172 4.172 19 C -0.043 4.043 20 H 0.144 0.856 21 C -0.045 4.045 22 N -0.205 5.205 23 C -0.174 4.174 24 C -0.190 4.190 25 N -0.170 5.170 26 C -0.190 4.190 27 C -0.144 4.144 28 H 0.224 0.776 29 H 0.138 0.862 30 H -0.182 1.182 31 H -0.185 1.185 32 H 0.146 0.854 33 H 0.147 0.853 34 H 0.147 0.853 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.103 0.897 38 H 0.102 0.898 39 H 0.116 0.884 40 H 0.117 0.883 41 H 0.236 0.764 42 H 0.105 0.895 43 H 0.107 0.893 44 H 0.189 0.811 45 H 0.195 0.805 46 H 0.255 0.745 47 H 0.104 0.896 48 H 0.098 0.902 49 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 3.646 3.203 4.113 6.362 hybrid contribution -1.137 1.049 2.014 2.539 sum 2.510 4.252 6.127 7.869 Atomic orbital electron populations 1.86622 1.17527 1.79998 1.49249 1.25093 0.84099 1.11159 0.98325 0.94864 0.91653 0.74163 0.80086 1.20073 0.97839 0.93578 0.96394 1.20971 1.01467 0.99959 0.95127 1.20908 0.97642 0.93650 0.96989 1.21316 1.04585 0.95933 1.00516 1.19025 0.94932 0.82956 0.94437 1.86086 1.74201 1.19961 1.42228 1.22821 0.98767 0.93773 0.86197 1.21235 1.03504 0.91850 0.97766 1.21540 1.03552 0.92441 1.00317 1.20630 0.78804 0.88640 0.81724 1.90765 1.39024 1.75349 1.35522 1.45981 1.58163 1.09574 1.23705 1.22463 0.94951 0.80359 1.00160 0.85832 1.23423 0.96696 0.97656 0.99404 1.20768 0.97906 0.98088 0.87526 0.85632 1.22866 1.02184 0.87719 0.91705 1.70252 1.20547 1.20393 1.09268 1.22431 1.05300 0.97556 0.92105 1.22821 1.09774 0.95253 0.91162 1.43261 1.50531 1.16343 1.06845 1.23571 0.99824 0.96008 0.99592 1.20287 1.03194 0.93699 0.97234 0.77635 0.86221 1.18212 1.18538 0.85396 0.85250 0.85288 0.91851 0.91710 0.89707 0.89797 0.88411 0.88277 0.76399 0.89458 0.89310 0.81132 0.80468 0.74535 0.89564 0.90185 0.84814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -0.94 12.84 -35.23 -0.45 -1.39 16 2 C -0.08 -0.02 2.80 36.00 0.10 0.08 16 3 Si 0.69 -0.61 29.88 -169.99 -5.08 -5.69 16 4 C -0.08 -0.06 5.35 -104.65 -0.56 -0.62 16 5 C -0.16 0.03 8.67 -39.56 -0.34 -0.31 16 6 C -0.07 0.04 10.04 -39.60 -0.40 -0.36 16 7 C -0.20 0.00 9.04 -39.43 -0.36 -0.36 16 8 C 0.13 0.24 6.69 -39.21 -0.26 -0.02 16 9 O -0.31 -0.64 10.14 -19.42 -0.20 -0.83 16 10 C 0.06 -0.09 4.74 37.16 0.18 0.09 16 11 C -0.11 0.11 4.87 -26.73 -0.13 -0.02 16 12 C -0.14 0.49 5.70 -27.88 -0.16 0.34 16 13 C 0.52 -0.32 7.83 -10.99 -0.09 -0.40 16 14 O -0.53 -2.15 15.58 5.55 0.09 -2.07 16 15 N -0.72 2.22 5.36 -53.02 -0.28 1.94 16 16 C 0.13 -0.28 4.24 -67.12 -0.28 -0.57 16 17 H 0.12 -0.07 7.46 -51.93 -0.39 -0.45 16 18 C -0.13 0.36 7.38 -25.92 -0.19 0.17 16 19 C -0.02 0.03 4.29 -90.96 -0.39 -0.36 16 20 H 0.13 -0.16 8.14 -51.93 -0.42 -0.59 16 21 C 0.22 0.19 7.36 -155.41 -1.14 -0.96 16 22 N -0.49 -1.83 11.25 -10.81 -0.12 -1.96 16 23 C -0.03 -0.05 11.87 -17.81 -0.21 -0.26 16 24 C -0.06 0.03 12.04 -16.56 -0.20 -0.17 16 25 N -0.57 0.73 5.94 -10.23 -0.06 0.67 16 26 C -0.15 0.42 7.36 -25.92 -0.19 0.23 16 27 C -0.13 -0.26 9.63 -39.43 -0.38 -0.64 16 28 H 0.38 -0.42 8.70 45.56 0.40 -0.02 16 29 H 0.12 -0.05 7.96 -51.93 -0.41 -0.47 16 30 H -0.26 -0.62 7.11 56.52 0.40 -0.22 16 31 H -0.26 -0.23 7.01 56.52 0.40 0.17 16 32 H 0.13 -0.24 4.84 -52.49 -0.25 -0.49 16 33 H 0.13 -0.36 8.06 -52.49 -0.42 -0.79 16 34 H 0.13 -0.28 6.30 -52.49 -0.33 -0.61 16 35 H 0.06 -0.17 7.66 -51.93 -0.40 -0.57 16 36 H 0.06 -0.18 7.66 -51.93 -0.40 -0.58 16 37 H 0.08 0.05 8.10 -51.92 -0.42 -0.37 16 38 H 0.08 0.05 8.10 -51.93 -0.42 -0.37 16 39 H 0.10 -0.55 8.14 -51.93 -0.42 -0.97 16 40 H 0.10 -0.54 8.14 -51.93 -0.42 -0.97 16 41 H 0.40 -2.33 8.73 -40.82 -0.36 -2.69 16 42 H 0.09 -0.28 8.07 -51.92 -0.42 -0.70 16 43 H 0.09 -0.21 8.14 -51.93 -0.42 -0.63 16 44 H 0.17 -0.01 8.06 -52.49 -0.42 -0.43 16 45 H 0.18 -0.65 8.06 -52.49 -0.42 -1.07 16 46 H 0.42 -1.74 7.53 -40.82 -0.31 -2.05 16 47 H 0.09 -0.18 8.14 -51.93 -0.42 -0.60 16 48 H 0.08 -0.33 6.64 -51.93 -0.34 -0.68 16 49 H 0.13 0.31 8.06 -52.49 -0.42 -0.11 16 LS Contribution 405.67 15.07 6.11 6.11 Total: 0.00 -11.53 405.67 -12.07 -23.59 By element: Atomic # 1 Polarization: -9.19 SS G_CDS: -7.06 Total: -16.25 kcal Atomic # 6 Polarization: 0.88 SS G_CDS: -5.01 Total: -4.13 kcal Atomic # 7 Polarization: 1.12 SS G_CDS: -0.47 Total: 0.66 kcal Atomic # 8 Polarization: -3.73 SS G_CDS: -0.56 Total: -4.29 kcal Atomic # 14 Polarization: -0.61 SS G_CDS: -5.08 Total: -5.69 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -11.53 -12.07 -23.59 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14772358_4549616.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.465 kcal (2) G-P(sol) polarization free energy of solvation -11.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.592 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds