Wall clock time and date at job start Sun Mar 7 2021 04:34:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42904 * 1 3 3 Si 1.86297 * 109.47128 * 2 1 4 4 C 1.50697 * 109.47224 * 120.00539 * 2 1 3 5 5 C 1.38246 * 119.96827 * 244.99875 * 4 2 1 6 6 C 1.38286 * 120.11000 * 180.02562 * 5 4 2 7 7 C 1.38127 * 120.05926 * 359.96002 * 6 5 4 8 8 C 1.38762 * 119.93876 * 0.02562 * 7 6 5 9 9 O 1.35899 * 120.05047 * 180.02562 * 8 7 6 10 10 C 1.42896 * 117.00224 * 0.02562 * 9 8 7 11 11 C 1.53002 * 109.46985 * 179.97438 * 10 9 8 12 12 C 1.52999 * 109.47134 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.47528 * 180.02562 * 12 11 10 14 14 O 1.21292 * 119.99414 * 359.97438 * 13 12 11 15 15 N 1.34774 * 120.00561 * 180.02562 * 13 12 11 16 16 C 1.46497 * 120.00074 * 179.97438 * 15 13 12 17 17 H 1.08996 * 112.85261 * 23.80547 * 16 15 13 18 18 C 1.53779 * 113.61403 * 154.99865 * 16 15 13 19 19 C 1.53778 * 87.08275 * 140.06421 * 18 16 15 20 20 H 1.09002 * 113.61552 * 89.20262 * 19 18 16 21 21 C 1.50700 * 113.61371 * 220.02002 * 19 18 16 22 22 N 1.30499 * 125.65164 * 264.99816 * 21 19 18 23 23 C 1.34128 * 109.26095 * 180.02562 * 22 21 19 24 24 C 1.34675 * 108.01655 * 0.02562 * 23 22 21 25 25 N 1.35046 * 125.65379 * 84.99997 * 21 19 18 26 26 C 1.53780 * 87.08044 * 334.56580 * 19 18 16 27 27 C 1.38164 * 119.97366 * 65.25396 * 4 2 1 28 28 H 0.96706 * 113.99373 * 299.99589 * 1 2 3 29 29 H 1.09003 * 109.46749 * 240.00294 * 2 1 3 30 30 H 1.48503 * 110.00220 * 300.00375 * 3 2 1 31 31 H 1.48506 * 109.99804 * 61.32165 * 3 2 1 32 32 H 1.07999 * 119.94512 * 359.97438 * 5 4 2 33 33 H 1.08001 * 119.97294 * 179.97438 * 6 5 4 34 34 H 1.07998 * 120.03423 * 180.02562 * 7 6 5 35 35 H 1.09001 * 109.47485 * 60.00012 * 10 9 8 36 36 H 1.09007 * 109.46871 * 299.99459 * 10 9 8 37 37 H 1.09009 * 109.47208 * 59.99956 * 11 10 9 38 38 H 1.08995 * 109.47289 * 299.99644 * 11 10 9 39 39 H 1.09000 * 109.47322 * 59.99685 * 12 11 10 40 40 H 1.09005 * 109.47441 * 300.00399 * 12 11 10 41 41 H 0.97003 * 119.99809 * 359.97438 * 15 13 12 42 42 H 1.09007 * 113.61337 * 25.51311 * 18 16 15 43 43 H 1.09003 * 113.69536 * 254.62763 * 18 16 15 44 44 H 1.08002 * 125.99298 * 180.26684 * 23 22 21 45 45 H 1.07999 * 126.58848 * 180.02562 * 24 23 22 46 46 H 0.97001 * 126.39490 * 359.97438 * 25 21 19 47 47 H 1.09001 * 113.61184 * 139.97720 * 26 19 18 48 48 H 1.08997 * 113.61964 * 270.88366 * 26 19 18 49 49 H 1.07996 * 120.03215 * 359.97438 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7105 1.2304 5 6 2.6388 -0.0118 2.1908 6 6 3.1016 -0.6609 3.3208 7 6 2.8573 -2.0095 3.4928 8 6 2.1472 -2.7130 2.5303 9 8 1.9051 -4.0397 2.6975 10 6 2.4105 -4.6464 3.8884 11 6 2.0419 -6.1313 3.9003 12 6 2.5835 -6.7811 5.1752 13 6 2.2211 -8.2438 5.1867 14 8 1.5910 -8.7196 4.2659 15 7 2.5960 -9.0230 6.2204 16 6 2.2431 -10.4448 6.2317 17 1 2.0645 -10.8445 5.2336 18 6 3.1914 -11.3081 7.0804 19 6 1.9445 -12.0743 7.5525 20 1 1.6850 -12.9204 6.9162 21 6 1.9730 -12.4302 9.0166 22 7 2.3793 -13.5655 9.5156 23 6 2.2633 -13.5284 10.8513 24 6 1.7656 -12.3246 11.1930 25 7 1.5823 -11.6271 10.0296 26 6 1.1412 -10.7998 7.2439 27 6 1.6891 -2.0607 1.3950 28 1 -0.3932 0.4417 0.7652 29 1 1.7923 -0.5138 -0.8901 30 1 1.5615 2.4679 -1.2084 31 1 1.5879 2.4585 1.2243 32 1 2.8310 1.0427 2.0581 33 1 3.6544 -0.1130 4.0695 34 1 3.2185 -2.5160 4.3756 35 1 1.9738 -4.1571 4.7590 36 1 3.4950 -4.5407 3.9180 37 1 2.4783 -6.6210 3.0297 38 1 0.9574 -6.2367 3.8709 39 1 2.1476 -6.2915 6.0460 40 1 3.6681 -6.6757 5.2043 41 1 3.0996 -8.6424 6.9570 42 1 3.6913 -10.7550 7.8757 43 1 3.8787 -11.9140 6.4898 44 1 2.5268 -14.3231 11.5336 45 1 1.5534 -11.9759 12.1929 46 1 1.2359 -10.7248 9.9480 47 1 0.1724 -10.9950 6.7840 48 1 1.0804 -10.1078 8.0839 49 1 1.1397 -2.6070 0.6426 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14772358_4549616.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:34:21 Heat of formation + Delta-G solvation = 0.645031 kcal Electronic energy + Delta-G solvation = -29497.509746 eV Core-core repulsion = 25200.057612 eV Total energy + Delta-G solvation = -4297.452133 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 358.173 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -43.10523 -41.32064 -41.07513 -39.45930 -39.12781 -37.41626 -34.90948 -34.61018 -33.46451 -32.47714 -31.27244 -30.59576 -28.47964 -26.89363 -26.82487 -25.89438 -23.75587 -23.50139 -22.59059 -21.92571 -21.65299 -21.43865 -20.66955 -19.22048 -19.03873 -18.12102 -17.91508 -17.46000 -17.22673 -17.05213 -16.82780 -16.55391 -16.33327 -16.12607 -15.80024 -15.51629 -15.21918 -14.99574 -14.80546 -14.64375 -14.63452 -14.27331 -14.11765 -13.98297 -13.57301 -13.53061 -13.31678 -13.23108 -13.08523 -12.75437 -12.45900 -12.30850 -12.28446 -12.02502 -11.91123 -11.72603 -11.59795 -11.54338 -11.04239 -11.03142 -10.92747 -10.65977 -10.09876 -9.93526 -9.35408 -9.24062 -4.91016 0.22009 0.41602 1.08300 1.29179 1.59528 1.61027 1.90079 1.98281 2.12034 2.18959 2.40975 2.67965 3.28526 3.37715 3.40636 3.59747 3.62702 3.67438 3.76753 3.85176 3.89581 3.95618 3.99068 4.11813 4.21574 4.24842 4.25645 4.35712 4.42553 4.44252 4.50891 4.54888 4.56012 4.58445 4.64870 4.66324 4.70956 4.78309 4.85821 4.96248 4.99449 5.02116 5.08084 5.16684 5.20850 5.29696 5.39311 5.46058 5.51401 5.75452 5.78381 6.43887 6.45905 6.48430 6.53259 7.13498 7.24854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.551 6.551 2 C -0.093 4.093 3 Si 0.783 3.217 4 C -0.082 4.082 5 C -0.162 4.162 6 C -0.073 4.073 7 C -0.205 4.205 8 C 0.116 3.884 9 O -0.339 6.339 10 C 0.058 3.942 11 C -0.103 4.103 12 C -0.128 4.128 13 C 0.510 3.490 14 O -0.588 6.588 15 N -0.707 5.707 16 C 0.124 3.876 17 H 0.101 0.899 18 C -0.120 4.120 19 C -0.026 4.026 20 H 0.115 0.885 21 C 0.212 3.788 22 N -0.534 5.534 23 C -0.064 4.064 24 C -0.041 4.041 25 N -0.555 5.555 26 C -0.139 4.139 27 C -0.152 4.152 28 H 0.386 0.614 29 H 0.119 0.881 30 H -0.304 1.304 31 H -0.276 1.276 32 H 0.146 0.854 33 H 0.159 0.841 34 H 0.154 0.846 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.059 0.941 38 H 0.059 0.941 39 H 0.129 0.871 40 H 0.128 0.872 41 H 0.419 0.581 42 H 0.100 0.900 43 H 0.083 0.917 44 H 0.176 0.824 45 H 0.211 0.789 46 H 0.432 0.568 47 H 0.077 0.923 48 H 0.101 0.899 49 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.409 6.003 8.587 11.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.359 6.359 2 C -0.201 4.201 3 Si 0.687 3.313 4 C -0.082 4.082 5 C -0.179 4.179 6 C -0.091 4.091 7 C -0.223 4.223 8 C 0.071 3.929 9 O -0.254 6.254 10 C -0.017 4.017 11 C -0.141 4.141 12 C -0.167 4.167 13 C 0.298 3.702 14 O -0.468 6.468 15 N -0.358 5.358 16 C 0.019 3.981 17 H 0.119 0.881 18 C -0.159 4.159 19 C -0.047 4.047 20 H 0.133 0.867 21 C -0.052 4.052 22 N -0.254 5.254 23 C -0.211 4.211 24 C -0.176 4.176 25 N -0.160 5.160 26 C -0.178 4.178 27 C -0.171 4.171 28 H 0.235 0.765 29 H 0.137 0.863 30 H -0.233 1.233 31 H -0.203 1.203 32 H 0.164 0.836 33 H 0.176 0.824 34 H 0.172 0.828 35 H 0.101 0.899 36 H 0.103 0.897 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.147 0.853 40 H 0.146 0.854 41 H 0.257 0.743 42 H 0.119 0.881 43 H 0.102 0.898 44 H 0.194 0.806 45 H 0.227 0.773 46 H 0.273 0.727 47 H 0.095 0.905 48 H 0.119 0.881 49 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 5.056 5.319 6.863 10.048 hybrid contribution -1.605 0.343 1.176 2.019 sum 3.451 5.661 8.040 10.421 Atomic orbital electron populations 1.86583 1.18632 1.80554 1.50099 1.25429 0.83454 1.12740 0.98437 0.93847 0.90099 0.70944 0.76418 1.20117 0.98135 0.93109 0.96853 1.21219 1.00947 1.00789 0.94965 1.21304 0.96985 0.93573 0.97197 1.21609 1.03734 0.96285 1.00675 1.19204 0.95694 0.83067 0.94949 1.86055 1.74900 1.20410 1.44009 1.23005 0.99996 0.92955 0.85731 1.21162 1.01897 0.92600 0.98427 1.21544 1.05340 0.89971 0.99853 1.21216 0.77861 0.89947 0.81168 1.90750 1.41779 1.76540 1.37736 1.45846 1.57422 1.08966 1.23614 1.22305 0.95638 0.80920 0.99274 0.88116 1.23347 0.96089 0.97158 0.99298 1.20784 0.99115 0.98363 0.86400 0.86662 1.23097 1.01976 0.87533 0.92638 1.70177 1.22355 1.22310 1.10580 1.22748 1.07258 0.99238 0.91861 1.23286 1.07589 0.94262 0.92422 1.43227 1.49749 1.16826 1.06177 1.23523 0.98947 0.95534 0.99802 1.20340 1.04459 0.94560 0.97713 0.76471 0.86274 1.23300 1.20252 0.83650 0.82374 0.82826 0.89895 0.89724 0.92207 0.92253 0.85300 0.85385 0.74320 0.88141 0.89791 0.80648 0.77253 0.72726 0.90451 0.88104 0.86653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -2.75 12.84 -148.98 -1.91 -4.66 16 2 C -0.09 -0.12 2.80 71.23 0.20 0.08 16 3 Si 0.78 -1.51 29.88 68.60 2.05 0.54 16 4 C -0.08 -0.17 5.35 -19.88 -0.11 -0.27 16 5 C -0.16 0.26 8.67 22.28 0.19 0.46 16 6 C -0.07 0.24 10.04 22.25 0.22 0.46 16 7 C -0.20 0.32 9.04 22.37 0.20 0.52 16 8 C 0.12 0.48 6.69 22.51 0.15 0.63 16 9 O -0.34 -1.77 10.14 -92.42 -0.94 -2.71 16 10 C 0.06 -0.21 4.74 71.98 0.34 0.14 16 11 C -0.10 0.14 4.87 30.59 0.15 0.29 16 12 C -0.13 1.11 5.70 29.85 0.17 1.28 16 13 C 0.51 -0.63 7.83 87.66 0.69 0.05 16 14 O -0.59 -5.95 15.58 -3.07 -0.05 -5.99 16 15 N -0.71 5.00 5.36 -440.04 -2.36 2.64 16 16 C 0.12 -0.52 4.24 45.52 0.19 -0.33 16 17 H 0.10 0.10 7.46 -2.39 -0.02 0.08 16 18 C -0.12 0.65 7.38 31.12 0.23 0.88 16 19 C -0.03 0.06 4.29 -11.02 -0.05 0.02 16 20 H 0.12 -0.08 8.14 -2.39 -0.02 -0.10 16 21 C 0.21 0.39 7.36 138.13 1.02 1.41 16 22 N -0.53 -4.60 11.25 -188.12 -2.12 -6.71 16 23 C -0.06 -0.27 11.87 83.52 0.99 0.72 16 24 C -0.04 0.10 12.04 83.09 1.00 1.10 16 25 N -0.55 2.12 5.94 -186.27 -1.11 1.02 16 26 C -0.14 0.80 7.36 31.12 0.23 1.03 16 27 C -0.15 -0.88 9.63 22.37 0.22 -0.67 16 28 H 0.39 -0.43 8.70 -74.05 -0.64 -1.07 16 29 H 0.12 0.08 7.96 -2.39 -0.02 0.06 16 30 H -0.30 -1.82 7.11 99.48 0.71 -1.11 16 31 H -0.28 -0.19 7.01 99.48 0.70 0.51 16 32 H 0.15 -0.83 4.84 -2.91 -0.01 -0.84 16 33 H 0.16 -1.46 8.06 -2.91 -0.02 -1.49 16 34 H 0.15 -1.12 6.30 -2.91 -0.02 -1.14 16 35 H 0.08 -0.63 7.66 -2.39 -0.02 -0.65 16 36 H 0.08 -0.65 7.66 -2.38 -0.02 -0.66 16 37 H 0.06 0.20 8.10 -2.38 -0.02 0.18 16 38 H 0.06 0.20 8.10 -2.39 -0.02 0.18 16 39 H 0.13 -1.86 8.14 -2.39 -0.02 -1.88 16 40 H 0.13 -1.79 8.14 -2.38 -0.02 -1.81 16 41 H 0.42 -5.88 8.73 -92.71 -0.81 -6.69 16 42 H 0.10 -0.79 8.07 -2.38 -0.02 -0.81 16 43 H 0.08 -0.35 8.14 -2.39 -0.02 -0.37 16 44 H 0.18 0.19 8.06 -2.91 -0.02 0.16 16 45 H 0.21 -2.05 8.06 -2.91 -0.02 -2.08 16 46 H 0.43 -4.54 7.53 -92.71 -0.70 -5.24 16 47 H 0.08 -0.26 8.14 -2.39 -0.02 -0.28 16 48 H 0.10 -1.02 6.64 -2.39 -0.02 -1.03 16 49 H 0.12 0.95 8.06 -2.91 -0.02 0.92 16 Total: 0.00 -31.75 405.67 -1.51 -33.26 By element: Atomic # 1 Polarization: -24.05 SS G_CDS: -1.12 Total: -25.16 kcal Atomic # 6 Polarization: 1.75 SS G_CDS: 6.04 Total: 7.79 kcal Atomic # 7 Polarization: 2.52 SS G_CDS: -5.58 Total: -3.06 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: -2.90 Total: -13.36 kcal Atomic # 14 Polarization: -1.51 SS G_CDS: 2.05 Total: 0.54 kcal Total: -31.75 -1.51 -33.26 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14772358_4549616.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.905 kcal (2) G-P(sol) polarization free energy of solvation -31.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds