Wall clock time and date at job start Sun Mar 7 2021 04:34:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86304 * 109.47561 * 2 1 4 4 C 1.50710 * 109.46856 * 119.99818 * 2 1 3 5 5 C 1.38264 * 119.94283 * 64.99711 * 4 2 1 6 6 C 1.38141 * 120.05325 * 180.02562 * 5 4 2 7 7 C 1.38730 * 119.94727 * 359.97438 * 6 5 4 8 8 O 1.35901 * 120.05985 * 180.02562 * 7 6 5 9 9 C 1.42899 * 117.00329 * 179.97438 * 8 7 6 10 10 C 1.50697 * 109.47192 * 179.97438 * 9 8 7 11 11 C 1.36412 * 125.80030 * 90.00038 * 10 9 8 12 12 C 1.47378 * 127.19219 * 0.02562 * 11 10 9 13 13 O 1.21606 * 120.00243 * 359.70190 * 12 11 10 14 14 N 1.34777 * 119.99816 * 179.70563 * 12 11 10 15 15 C 1.46502 * 119.99843 * 179.97438 * 14 12 11 16 16 H 1.09000 * 112.90816 * 23.74366 * 15 14 12 17 17 C 1.53784 * 113.61491 * 154.99806 * 15 14 12 18 18 C 1.53787 * 87.07923 * 139.97939 * 17 15 14 19 19 H 1.09004 * 113.60869 * 89.20131 * 18 17 15 20 20 C 1.50694 * 113.61364 * 220.01686 * 18 17 15 21 21 N 1.30505 * 125.65507 * 265.02959 * 20 18 17 22 22 C 1.34119 * 109.25935 * 180.02562 * 21 20 18 23 23 C 1.34670 * 108.02478 * 359.97438 * 22 21 20 24 24 N 1.35048 * 125.64927 * 84.72345 * 20 18 17 25 25 C 1.53778 * 87.08035 * 334.56830 * 18 17 15 26 26 C 1.47029 * 105.61498 * 179.75080 * 11 10 9 27 27 C 1.34174 * 105.95042 * 0.23260 * 26 11 10 28 28 O 1.33657 * 125.80344 * 270.14158 * 10 9 8 29 29 C 1.38731 * 119.88751 * 0.27314 * 7 6 5 30 30 C 1.38148 * 119.94036 * 359.47718 * 29 7 6 31 31 H 0.96700 * 114.00154 * 300.01109 * 1 2 3 32 32 H 1.08993 * 109.47298 * 239.99121 * 2 1 3 33 33 H 1.48501 * 109.99897 * 178.68047 * 3 2 1 34 34 H 1.48494 * 109.99693 * 299.99800 * 3 2 1 35 35 H 1.07997 * 119.97310 * 0.02562 * 5 4 2 36 36 H 1.08008 * 120.02623 * 179.97438 * 6 5 4 37 37 H 1.09009 * 109.46570 * 60.00189 * 9 8 7 38 38 H 1.08997 * 109.47088 * 300.00458 * 9 8 7 39 39 H 0.97002 * 120.00010 * 359.97438 * 14 12 11 40 40 H 1.09004 * 113.61451 * 25.43425 * 17 15 14 41 41 H 1.08994 * 113.61477 * 254.52726 * 17 15 14 42 42 H 1.08000 * 125.99081 * 179.97438 * 22 21 20 43 43 H 1.07998 * 126.59966 * 179.97438 * 23 22 21 44 44 H 0.96994 * 126.39658 * 359.97438 * 24 20 18 45 45 H 1.08999 * 113.61111 * 139.98327 * 25 18 17 46 46 H 1.08999 * 113.61280 * 270.79710 * 25 18 17 47 47 H 1.08002 * 127.02203 * 180.24494 * 26 11 10 48 48 H 1.07999 * 125.43091 * 180.02562 * 27 26 11 49 49 H 1.07996 * 120.03248 * 179.72047 * 29 7 6 50 50 H 1.08009 * 119.97201 * 180.22670 * 30 29 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7104 1.2306 5 6 1.6838 -2.0605 1.3974 6 6 2.1427 -2.7138 2.5247 7 6 2.8528 -2.0144 3.4897 8 8 3.3058 -2.6549 4.5993 9 6 4.0299 -1.8719 5.5504 10 6 4.4485 -2.7449 6.7052 11 6 5.6154 -3.4458 6.7936 12 6 6.6999 -3.4998 5.7972 13 8 6.6022 -2.8763 4.7577 14 7 7.8000 -4.2402 6.0380 15 6 8.8779 -4.2943 5.0472 16 1 8.8907 -3.4275 4.3865 17 6 10.2523 -4.6299 5.6499 18 6 10.4924 -5.5103 4.4120 19 1 10.9480 -4.9762 3.5782 20 6 11.1858 -6.8118 4.7222 21 7 12.4704 -7.0274 4.6415 22 6 12.7287 -8.2964 4.9905 23 6 11.5600 -8.8897 5.2997 24 7 10.5815 -7.9467 5.1352 25 6 8.9638 -5.6373 4.3031 26 6 5.5680 -4.1309 8.0937 27 6 4.3964 -3.7865 8.6495 28 8 3.7384 -2.9660 7.8158 29 6 3.0953 -0.6587 3.3224 30 6 2.6387 -0.0111 2.1908 31 1 -0.3933 0.4418 0.7650 32 1 1.7923 -0.5139 -0.8898 33 1 3.5347 1.7701 0.0321 34 1 1.5617 2.4678 -1.2085 35 1 1.1314 -2.6047 0.6457 36 1 1.9488 -3.7684 2.6547 37 1 3.3940 -1.0657 5.9166 38 1 4.9147 -1.4491 5.0746 39 1 7.8781 -4.7373 6.8673 40 1 10.1949 -5.1929 6.5815 41 1 10.9226 -3.7728 5.7127 42 1 13.7033 -8.7611 5.0187 43 1 11.4216 -9.9119 5.6197 44 1 9.6313 -8.0710 5.2851 45 1 8.5939 -5.5934 3.2788 46 1 8.5543 -6.4765 4.8654 47 1 6.3223 -4.7788 8.5152 48 1 4.0399 -4.1166 9.6141 49 1 3.6439 -0.1109 4.0743 50 1 2.8304 1.0436 2.0583 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14772358_4549634.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:34:34 Heat of formation + Delta-G solvation = 35.452404 kcal Electronic energy + Delta-G solvation = -35492.974170 eV Core-core repulsion = 30649.208403 eV Total energy + Delta-G solvation = -4843.765767 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 396.156 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -43.72335 -43.11425 -41.30807 -41.01159 -39.34618 -39.13223 -37.18366 -34.94550 -33.88353 -33.46831 -32.83117 -31.99355 -31.39225 -30.60292 -28.05636 -26.85512 -26.49713 -26.07301 -24.43063 -23.80060 -22.75958 -22.41827 -22.20946 -21.53347 -21.32527 -20.49842 -19.50890 -19.15340 -19.01709 -18.25990 -17.48783 -17.22287 -17.19427 -16.97797 -16.67474 -16.54944 -16.39923 -15.96773 -15.83172 -15.79778 -15.75241 -15.45083 -14.92654 -14.84881 -14.67245 -14.59625 -14.36750 -14.22471 -14.10787 -13.81180 -13.70621 -13.59355 -13.51314 -13.47428 -13.12049 -12.51422 -12.28058 -12.09293 -12.08358 -12.03607 -11.78127 -11.74836 -11.16127 -11.05018 -11.03551 -10.97267 -10.41624 -10.19307 -10.06875 -9.83482 -9.36480 -9.25489 -5.01153 -0.04671 0.25736 0.28130 1.02466 1.07454 1.32394 1.51068 1.64017 1.96397 1.98256 2.09454 2.11738 2.22365 2.45954 2.63399 3.25544 3.34166 3.35242 3.55464 3.57194 3.59264 3.68367 3.69676 3.76186 3.79576 3.90829 3.94194 3.94607 4.11146 4.23298 4.28238 4.41039 4.45192 4.46150 4.48615 4.52798 4.55089 4.61269 4.64820 4.65333 4.76338 4.80194 4.83009 4.94257 4.94315 5.05171 5.12923 5.16394 5.23898 5.26182 5.43821 5.46459 5.67227 5.77520 5.88454 6.24860 6.41680 6.46490 6.79048 7.08009 7.12177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.556 6.556 2 C -0.069 4.069 3 Si 0.775 3.225 4 C -0.162 4.162 5 C -0.059 4.059 6 C -0.163 4.163 7 C 0.125 3.875 8 O -0.322 6.322 9 C 0.134 3.866 10 C 0.041 3.959 11 C -0.224 4.224 12 C 0.585 3.415 13 O -0.570 6.570 14 N -0.696 5.696 15 C 0.127 3.873 16 H 0.109 0.891 17 C -0.119 4.119 18 C -0.023 4.023 19 H 0.119 0.881 20 C 0.212 3.788 21 N -0.532 5.532 22 C -0.063 4.063 23 C -0.042 4.042 24 N -0.556 5.556 25 C -0.141 4.141 26 C -0.196 4.196 27 C -0.012 4.012 28 O -0.177 6.177 29 C -0.205 4.205 30 C -0.074 4.074 31 H 0.395 0.605 32 H 0.105 0.895 33 H -0.288 1.288 34 H -0.298 1.298 35 H 0.138 0.862 36 H 0.133 0.867 37 H 0.102 0.898 38 H 0.107 0.893 39 H 0.416 0.584 40 H 0.099 0.901 41 H 0.088 0.912 42 H 0.177 0.823 43 H 0.210 0.790 44 H 0.431 0.569 45 H 0.078 0.922 46 H 0.097 0.903 47 H 0.192 0.808 48 H 0.251 0.749 49 H 0.150 0.850 50 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.002 -1.782 8.770 9.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.364 6.364 2 C -0.179 4.179 3 Si 0.681 3.319 4 C -0.162 4.162 5 C -0.077 4.077 6 C -0.181 4.181 7 C 0.080 3.920 8 O -0.237 6.237 9 C 0.060 3.940 10 C -0.012 4.012 11 C -0.229 4.229 12 C 0.374 3.626 13 O -0.450 6.450 14 N -0.347 5.347 15 C 0.022 3.978 16 H 0.127 0.873 17 C -0.158 4.158 18 C -0.043 4.043 19 H 0.137 0.863 20 C -0.053 4.053 21 N -0.252 5.252 22 C -0.210 4.210 23 C -0.176 4.176 24 N -0.161 5.161 25 C -0.180 4.180 26 C -0.215 4.215 27 C -0.078 4.078 28 O -0.073 6.073 29 C -0.223 4.223 30 C -0.092 4.092 31 H 0.245 0.755 32 H 0.122 0.878 33 H -0.215 1.215 34 H -0.227 1.227 35 H 0.156 0.844 36 H 0.151 0.849 37 H 0.120 0.880 38 H 0.125 0.875 39 H 0.253 0.747 40 H 0.117 0.883 41 H 0.107 0.893 42 H 0.194 0.806 43 H 0.227 0.773 44 H 0.272 0.728 45 H 0.097 0.903 46 H 0.116 0.884 47 H 0.209 0.791 48 H 0.267 0.733 49 H 0.167 0.833 50 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -1.155 -0.599 6.973 7.093 hybrid contribution -0.307 -1.762 0.364 1.825 sum -1.462 -2.361 7.337 7.845 Atomic orbital electron populations 1.86461 1.17286 1.82189 1.50487 1.25104 0.85217 1.10660 0.96871 0.93821 0.77747 0.75447 0.84845 1.20350 1.02687 0.95081 0.98104 1.20940 0.96703 0.93963 0.96101 1.20613 1.02278 1.01065 0.94181 1.19165 0.94429 0.91736 0.86674 1.86046 1.68988 1.38963 1.29659 1.21163 0.98211 0.90805 0.83847 1.22066 0.90788 1.00179 0.88134 1.21386 0.97265 1.05552 0.98723 1.17460 0.81811 0.78472 0.84857 1.90784 1.80328 1.46056 1.27866 1.45596 1.17368 1.49116 1.22591 1.22414 0.85679 0.98522 0.91186 0.87343 1.23358 0.95114 0.99896 0.97444 1.20764 0.94025 0.89079 1.00478 0.86310 1.23098 0.88577 0.90584 1.03036 1.70179 1.14385 1.18651 1.21972 1.22751 0.99953 0.91106 1.07223 1.23289 0.88092 0.97414 1.08832 1.43247 1.11315 1.10086 1.51415 1.23536 0.93587 0.98461 1.02409 1.23242 1.00695 1.04631 0.92946 1.24904 0.92650 0.93115 0.97129 1.83798 1.44384 1.53962 1.25126 1.21430 1.06170 0.93329 1.01388 1.21016 0.95667 1.00055 0.92428 0.75506 0.87786 1.21543 1.22652 0.84444 0.84939 0.87962 0.87497 0.74685 0.88264 0.89339 0.80565 0.77315 0.72821 0.90301 0.88435 0.79097 0.73298 0.83284 0.83110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -0.85 12.83 -148.98 -1.91 -2.76 16 2 C -0.07 -0.08 2.80 71.24 0.20 0.12 16 3 Si 0.77 -0.69 29.80 68.60 2.04 1.35 16 4 C -0.16 -0.40 5.35 -19.85 -0.11 -0.51 16 5 C -0.06 -0.25 9.68 22.25 0.22 -0.03 16 6 C -0.16 -0.98 9.99 22.36 0.22 -0.76 16 7 C 0.12 0.83 6.69 22.51 0.15 0.98 16 8 O -0.32 -2.61 10.12 -92.44 -0.94 -3.55 16 9 C 0.13 0.48 4.74 71.24 0.34 0.81 16 10 C 0.04 0.15 7.00 25.26 0.18 0.33 16 11 C -0.22 -0.41 6.31 -18.99 -0.12 -0.53 16 12 C 0.59 2.31 7.81 86.65 0.68 2.99 16 13 O -0.57 -6.40 14.45 -4.05 -0.06 -6.45 16 14 N -0.70 2.26 5.35 -443.34 -2.37 -0.11 16 15 C 0.13 -0.37 4.24 45.52 0.19 -0.18 16 16 H 0.11 0.11 7.46 -2.39 -0.02 0.09 16 17 C -0.12 0.57 7.38 31.12 0.23 0.80 16 18 C -0.02 0.04 4.29 -11.01 -0.05 0.00 16 19 H 0.12 -0.09 8.14 -2.39 -0.02 -0.11 16 20 C 0.21 0.51 7.36 138.12 1.02 1.53 16 21 N -0.53 -4.72 11.25 -188.14 -2.12 -6.84 16 22 C -0.06 -0.29 11.87 83.53 0.99 0.70 16 23 C -0.04 0.07 12.04 83.09 1.00 1.07 16 24 N -0.56 1.62 5.94 -186.26 -1.11 0.51 16 25 C -0.14 0.61 7.35 31.12 0.23 0.84 16 26 C -0.20 1.08 10.60 23.65 0.25 1.33 16 27 C -0.01 0.07 12.03 66.89 0.80 0.88 16 28 O -0.18 -0.20 10.52 4.49 0.05 -0.16 16 29 C -0.20 -0.56 9.04 22.37 0.20 -0.36 16 30 C -0.07 -0.07 8.66 22.25 0.19 0.13 16 31 H 0.39 -2.62 8.70 -74.06 -0.64 -3.26 16 32 H 0.10 0.26 7.96 -2.39 -0.02 0.24 16 33 H -0.29 -1.24 7.11 99.48 0.71 -0.53 16 34 H -0.30 -1.92 7.11 99.48 0.71 -1.21 16 35 H 0.14 0.33 8.06 -2.91 -0.02 0.31 16 36 H 0.13 0.64 8.06 -2.91 -0.02 0.61 16 37 H 0.10 -0.14 7.65 -2.38 -0.02 -0.16 16 38 H 0.11 0.50 6.02 -2.39 -0.01 0.49 16 39 H 0.42 -3.83 7.90 -92.71 -0.73 -4.56 16 40 H 0.10 -0.68 8.07 -2.39 -0.02 -0.70 16 41 H 0.09 -0.37 8.14 -2.39 -0.02 -0.38 16 42 H 0.18 0.24 8.06 -2.91 -0.02 0.21 16 43 H 0.21 -1.89 8.06 -2.91 -0.02 -1.91 16 44 H 0.43 -3.95 7.53 -92.71 -0.70 -4.65 16 45 H 0.08 -0.17 8.14 -2.39 -0.02 -0.19 16 46 H 0.10 -0.77 6.64 -2.39 -0.02 -0.79 16 47 H 0.19 -2.45 7.74 -2.91 -0.02 -2.48 16 48 H 0.25 -3.68 8.06 -2.91 -0.02 -3.71 16 49 H 0.15 -0.23 6.30 -2.91 -0.02 -0.25 16 50 H 0.15 -0.65 4.90 -2.91 -0.01 -0.67 16 Total: 0.00 -30.89 421.30 -0.59 -31.48 By element: Atomic # 1 Polarization: -22.61 SS G_CDS: -1.00 Total: -23.60 kcal Atomic # 6 Polarization: 3.32 SS G_CDS: 6.82 Total: 10.13 kcal Atomic # 7 Polarization: -0.84 SS G_CDS: -5.60 Total: -6.44 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: -2.86 Total: -12.92 kcal Atomic # 14 Polarization: -0.69 SS G_CDS: 2.04 Total: 1.35 kcal Total: -30.89 -0.59 -31.48 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14772358_4549634.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.930 kcal (2) G-P(sol) polarization free energy of solvation -30.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.478 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds