Wall clock time and date at job start Sun Mar 7 2021 04:34:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= 0
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42899 * 1
3 3 C 1.35981 * 117.00055 * 2 1
4 4 C 1.38674 * 119.99911 * 180.02562 * 3 2 1
5 5 C 1.38157 * 119.99810 * 179.97438 * 4 3 2
6 6 C 1.50706 * 119.99710 * 179.97438 * 5 4 3
7 7 O 1.42903 * 109.47189 * 255.00111 * 6 5 4
8 8 Si 1.86299 * 109.47210 * 15.00366 * 6 5 4
9 9 C 1.38673 * 120.00340 * 0.02562 * 5 4 3
10 10 O 1.35981 * 120.00239 * 179.97438 * 9 5 4
11 11 C 1.42901 * 116.99691 * 179.97438 * 10 9 5
12 12 C 1.50703 * 109.46572 * 179.97438 * 11 10 9
13 13 O 1.21282 * 120.00093 * 359.97438 * 12 11 10
14 14 N 1.34781 * 119.99613 * 180.02562 * 12 11 10
15 15 C 1.46494 * 119.99714 * 180.02562 * 14 12 11
16 16 H 1.08995 * 112.85566 * 25.32410 * 15 14 12
17 17 C 1.53784 * 113.61839 * 156.52508 * 15 14 12
18 18 C 1.53781 * 87.08164 * 139.97433 * 17 15 14
19 19 H 1.09000 * 113.61024 * 89.20917 * 18 17 15
20 20 C 1.50698 * 113.61363 * 220.01825 * 18 17 15
21 21 N 1.30499 * 125.65172 * 265.02888 * 20 18 17
22 22 C 1.34127 * 109.25818 * 180.02562 * 21 20 18
23 23 C 1.34662 * 108.01885 * 359.97438 * 22 21 20
24 24 N 1.35043 * 125.64996 * 84.72242 * 20 18 17
25 25 C 1.53784 * 113.61446 * 254.13134 * 15 14 12
26 26 C 1.38728 * 119.99621 * 359.71661 * 9 5 4
27 27 C 1.38108 * 119.99946 * 0.53703 * 26 9 5
28 28 H 1.08996 * 109.47480 * 179.97438 * 1 2 3
29 29 H 1.09000 * 109.47367 * 299.99890 * 1 2 3
30 30 H 1.08997 * 109.47388 * 59.99809 * 1 2 3
31 31 H 1.07997 * 120.00328 * 359.97438 * 4 3 2
32 32 H 1.08998 * 109.46637 * 135.00466 * 6 5 4
33 33 H 0.96696 * 113.99941 * 179.97438 * 7 6 5
34 34 H 1.48493 * 110.00033 * 178.67938 * 8 6 5
35 35 H 1.48495 * 109.99992 * 299.99890 * 8 6 5
36 36 H 1.08991 * 109.47011 * 299.99386 * 11 10 9
37 37 H 1.08999 * 109.47213 * 59.99613 * 11 10 9
38 38 H 0.96993 * 120.00048 * 359.97438 * 14 12 11
39 39 H 1.08994 * 113.61459 * 254.53411 * 17 15 14
40 40 H 1.09002 * 113.60705 * 25.34300 * 17 15 14
41 41 H 1.07998 * 125.98934 * 179.97438 * 22 21 20
42 42 H 1.08004 * 126.59261 * 180.02562 * 23 22 21
43 43 H 0.96993 * 126.39602 * 0.02562 * 24 20 18
44 44 H 1.09007 * 113.61193 * 334.56718 * 25 15 14
45 45 H 1.09002 * 113.61918 * 105.46702 * 25 15 14
46 46 H 1.07998 * 119.99677 * 180.30068 * 26 9 5
47 47 H 1.08002 * 120.00212 * 179.77140 * 27 26 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0463 1.2116 0.0000
4 6 3.4312 1.2841 -0.0005
5 6 4.0584 2.5151 -0.0011
6 6 5.5634 2.5939 -0.0011
7 8 6.0208 2.9676 1.3002
8 14 6.2723 0.9320 -0.4550
9 6 3.3032 3.6782 -0.0005
10 8 3.9205 4.8898 -0.0005
11 6 3.0805 6.0458 -0.0005
12 6 3.9348 7.2873 0.0001
13 8 5.1438 7.1915 0.0010
14 7 3.3552 8.5041 0.0007
15 6 4.1856 9.7110 0.0008
16 1 5.1733 9.5453 -0.4293
17 6 3.4699 10.9514 -0.5598
18 6 4.1495 11.7536 0.5624
19 1 5.1272 12.1484 0.2863
20 6 3.2549 12.7919 1.1890
21 7 3.2012 14.0520 0.8537
22 6 2.2958 14.6760 1.6217
23 6 1.7680 13.7680 2.4647
24 7 2.3719 12.5715 2.1867
25 6 4.2179 10.4365 1.3564
26 6 1.9178 3.6056 -0.0054
27 6 1.2908 2.3750 0.0004
28 1 -0.3634 -1.0276 -0.0005
29 1 -0.3634 0.5138 0.8900
30 1 -0.3634 0.5138 -0.8899
31 1 4.0194 0.3784 -0.0005
32 1 5.8882 3.3384 -0.7280
33 1 6.9824 3.0374 1.3740
34 1 7.7550 1.0046 -0.4897
35 1 5.8368 -0.0918 0.5285
36 1 2.4514 6.0378 -0.8905
37 1 2.4512 6.0377 0.8894
38 1 2.3883 8.5807 0.0004
39 1 3.8011 11.2320 -1.5595
40 1 2.3844 10.9066 -0.4706
41 1 2.0357 15.7230 1.5727
42 1 1.0104 13.9482 3.2130
43 1 2.2000 11.7241 2.6263
44 1 3.3374 10.2514 1.9718
45 1 5.1523 10.3021 1.9014
46 1 1.3297 4.5113 -0.0099
47 1 0.2123 2.3185 0.0004
There are 66 doubly filled levels
RHF calculation, no. of doubly occupied orbitals= 66
No. of singly occupied orbitals= 1
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
s_22_14772358_4974302.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 7 2021 04:34:57
Heat of formation + Delta-G solvation = -14.534770 kcal
Electronic energy + Delta-G solvation = -31118.033000 eV
Core-core repulsion = 26656.778048 eV
Total energy + Delta-G solvation = -4461.254952 eV
No. of doubly occupied orbitals = 66
and no. of open levels = 1
Molecular weight
(most abundant/longest-lived isotopes) = 360.156 amu
Computer time = 1.20 seconds
Orbital eigenvalues (eV)
-43.10565 -41.77444 -41.09386 -40.03557 -39.17065 -38.12676 -37.03180 -34.80567
-33.46482 -32.93428 -31.21960 -30.61173 -29.34046 -27.95893 -26.83741 -26.59947
-25.96258 -23.73224 -22.64137 -22.31481 -21.92457 -21.53887 -20.75503 -19.43234
-19.01772 -18.64846 -18.57630 -18.37186 -17.55403 -17.36266 -17.06163 -16.60414
-16.49561 -16.07932 -15.79238 -15.65018 -15.55256 -15.50455 -15.26370 -14.89972
-14.75986 -14.58530 -14.12710 -14.02667 -13.82918 -13.73025 -13.57428 -13.55213
-13.39309 -13.18953 -12.56960 -12.52588 -12.46505 -12.04611 -11.91267 -11.74363
-11.69525 -11.40977 -11.04461 -11.02910 -10.96512 -10.46211 -10.18765 -10.11810
-9.35607 -8.79041 -4.97420 0.06050 0.36979 1.08139 1.25380 1.43223
1.49403 1.55621 1.87896 2.11819 2.18970 2.33480 2.53799 2.62094
3.25984 3.36404 3.42421 3.55446 3.57674 3.71068 3.74868 3.78697
3.95511 3.99765 4.08437 4.10909 4.17667 4.24678 4.25448 4.35925
4.43995 4.45539 4.49364 4.55321 4.57816 4.64347 4.71217 4.77246
4.78691 4.84615 4.96676 5.00453 5.05624 5.14396 5.16931 5.21988
5.42660 5.46052 5.78341 6.18687 6.41473 6.48219 6.48280 6.56681
7.12121 7.13398
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.017 3.983
2 O -0.337 6.337
3 C 0.087 3.913
4 C -0.127 4.127
5 C -0.083 4.083
6 C -0.078 4.078
7 O -0.553 6.553
8 Si 0.768 3.232
9 C 0.101 3.899
10 O -0.309 6.309
11 C 0.033 3.967
12 C 0.515 3.485
13 O -0.567 6.567
14 N -0.699 5.699
15 C 0.127 3.873
16 H 0.103 0.897
17 C -0.117 4.117
18 C -0.025 4.025
19 H 0.117 0.883
20 C 0.212 3.788
21 N -0.533 5.533
22 C -0.064 4.064
23 C -0.042 4.042
24 N -0.555 5.555
25 C -0.141 4.141
26 C -0.163 4.163
27 C -0.157 4.157
28 H 0.113 0.887
29 H 0.065 0.935
30 H 0.071 0.929
31 H 0.140 0.860
32 H 0.077 0.923
33 H 0.390 0.610
34 H -0.283 1.283
35 H -0.291 1.291
36 H 0.127 0.873
37 H 0.120 0.880
38 H 0.421 0.579
39 H 0.087 0.913
40 H 0.102 0.898
41 H 0.176 0.824
42 H 0.210 0.790
43 H 0.431 0.569
44 H 0.100 0.900
45 H 0.077 0.923
46 H 0.169 0.831
47 H 0.163 0.837
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.961 -0.501 -0.691 9.997
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.077 4.077
2 O -0.251 6.251
3 C 0.042 3.958
4 C -0.145 4.145
5 C -0.084 4.084
6 C -0.186 4.186
7 O -0.362 6.362
8 Si 0.672 3.328
9 C 0.056 3.944
10 O -0.222 6.222
11 C -0.045 4.045
12 C 0.302 3.698
13 O -0.445 6.445
14 N -0.353 5.353
15 C 0.022 3.978
16 H 0.121 0.879
17 C -0.157 4.157
18 C -0.046 4.046
19 H 0.135 0.865
20 C -0.052 4.052
21 N -0.253 5.253
22 C -0.211 4.211
23 C -0.176 4.176
24 N -0.160 5.160
25 C -0.180 4.180
26 C -0.181 4.181
27 C -0.176 4.176
28 H 0.131 0.869
29 H 0.083 0.917
30 H 0.089 0.911
31 H 0.157 0.843
32 H 0.095 0.905
33 H 0.240 0.760
34 H -0.210 1.210
35 H -0.218 1.218
36 H 0.144 0.856
37 H 0.138 0.862
38 H 0.259 0.741
39 H 0.106 0.894
40 H 0.121 0.879
41 H 0.194 0.806
42 H 0.227 0.773
43 H 0.272 0.728
44 H 0.119 0.881
45 H 0.096 0.904
46 H 0.186 0.814
47 H 0.180 0.820
Dipole moment (debyes) X Y Z Total
from point charges -8.496 -0.948 -0.954 8.602
hybrid contribution -0.371 0.419 1.805 1.889
sum -8.867 -0.529 0.850 8.923
Atomic orbital electron populations
1.23353 0.76317 1.05559 1.02461 1.86077 1.23486 1.26503 1.89075
1.18918 0.91805 0.85371 0.99719 1.20227 0.92734 0.97001 1.04563
1.18474 0.94035 0.90626 1.05274 1.24873 0.94189 1.11747 0.87795
1.86540 1.28263 1.91069 1.30373 0.94110 0.77288 0.73370 0.87999
1.18798 0.91558 0.84494 0.99534 1.86177 1.35162 1.11779 1.89066
1.22751 0.92793 0.82251 1.06667 1.20534 0.88343 0.85482 0.75475
1.90769 1.16706 1.87314 1.49698 1.45620 1.11162 1.03769 1.74699
1.22365 0.96196 0.82397 0.96805 0.87852 1.23346 1.01167 0.92169
0.98981 1.20801 0.97568 0.89387 0.96797 0.86504 1.23098 0.96247
0.93366 0.92497 1.70180 1.21856 1.05199 1.28086 1.22746 0.99207
1.01386 0.97754 1.23279 1.04140 0.84891 1.05297 1.43233 1.31398
1.11809 1.29590 1.23577 1.03992 0.93042 0.97385 1.21391 0.92001
1.00046 1.04669 1.21411 1.01576 0.90810 1.03789 0.86864 0.91668
0.91080 0.84264 0.90455 0.75998 1.21002 1.21826 0.85557 0.86204
0.74063 0.89423 0.87927 0.80634 0.77329 0.72752 0.88119 0.90428
0.81353 0.81979
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 -0.09 9.81 113.37 1.11 1.02 16
2 O -0.34 -1.17 10.50 -93.34 -0.98 -2.15 16
3 C 0.09 0.34 6.69 22.49 0.15 0.49 16
4 C -0.13 -0.79 8.59 22.35 0.19 -0.59 16
5 C -0.08 -0.60 5.30 -19.78 -0.10 -0.70 16
6 C -0.08 -0.52 2.36 71.24 0.17 -0.35 16
7 O -0.55 -5.36 12.86 -148.98 -1.92 -7.28 16
8 Si 0.77 2.36 30.20 68.60 2.07 4.43 16
9 C 0.10 0.49 6.66 22.49 0.15 0.64 16
10 O -0.31 -1.89 9.00 -74.30 -0.67 -2.56 16
11 C 0.03 -0.13 5.22 71.24 0.37 0.24 16
12 C 0.52 0.45 7.91 87.66 0.69 1.15 16
13 O -0.57 -7.15 16.12 16.00 0.26 -6.89 16
14 N -0.70 4.82 5.36 -440.03 -2.36 2.46 16
15 C 0.13 -0.58 4.21 45.52 0.19 -0.39 16
16 H 0.10 0.04 7.50 -2.39 -0.02 0.02 16
17 C -0.12 0.74 7.38 31.12 0.23 0.97 16
18 C -0.02 0.07 4.29 -10.96 -0.05 0.03 16
19 H 0.12 -0.15 8.14 -2.39 -0.02 -0.17 16
20 C 0.21 0.33 7.36 138.13 1.02 1.35 16
21 N -0.53 -4.43 11.25 -188.14 -2.12 -6.55 16
22 C -0.06 -0.26 11.87 83.52 0.99 0.73 16
23 C -0.04 0.10 12.04 83.08 1.00 1.10 16
24 N -0.56 2.16 5.94 -186.27 -1.11 1.05 16
25 C -0.14 0.81 7.37 31.18 0.23 1.04 16
26 C -0.16 0.29 9.03 22.36 0.20 0.49 16
27 C -0.16 0.21 9.03 22.35 0.20 0.41 16
28 H 0.11 -0.88 8.14 -2.39 -0.02 -0.90 16
29 H 0.06 -0.47 7.66 -2.39 -0.02 -0.49 16
30 H 0.07 -0.58 7.66 -2.39 -0.02 -0.60 16
31 H 0.14 0.78 4.90 -2.91 -0.01 0.77 16
32 H 0.08 0.49 7.82 -2.39 -0.02 0.47 16
33 H 0.39 0.86 8.74 -74.06 -0.65 0.21 16
34 H -0.28 -1.86 7.11 99.48 0.71 -1.15 16
35 H -0.29 -2.60 6.75 99.48 0.67 -1.93 16
36 H 0.13 -1.39 7.65 -2.39 -0.02 -1.41 16
37 H 0.12 -1.20 7.67 -2.39 -0.02 -1.21 16
38 H 0.42 -6.12 8.71 -92.71 -0.81 -6.93 16
39 H 0.09 -0.47 8.14 -2.39 -0.02 -0.48 16
40 H 0.10 -0.91 8.06 -2.39 -0.02 -0.93 16
41 H 0.18 0.17 8.06 -2.91 -0.02 0.14 16
42 H 0.21 -2.02 8.06 -2.91 -0.02 -2.04 16
43 H 0.43 -4.51 7.54 -92.71 -0.70 -5.21 16
44 H 0.10 -1.00 6.65 -2.38 -0.02 -1.02 16
45 H 0.08 -0.25 8.14 -2.39 -0.02 -0.27 16
46 H 0.17 -1.68 6.29 -2.91 -0.02 -1.69 16
47 H 0.16 -1.22 6.29 -2.91 -0.02 -1.24 16
Total: 0.00 -34.78 392.03 -1.16 -35.95
By element:
Atomic # 1 Polarization: -24.96 SS G_CDS: -1.10 Total: -26.06 kcal
Atomic # 6 Polarization: 0.86 SS G_CDS: 6.75 Total: 7.60 kcal
Atomic # 7 Polarization: 2.55 SS G_CDS: -5.58 Total: -3.04 kcal
Atomic # 8 Polarization: -15.58 SS G_CDS: -3.31 Total: -18.88 kcal
Atomic # 14 Polarization: 2.36 SS G_CDS: 2.07 Total: 4.43 kcal
Total: -34.78 -1.16 -35.95 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
s_22_14772358_4974302.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 21.414 kcal
(2) G-P(sol) polarization free energy of solvation -34.785 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.371 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.164 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.949 kcal
(6) G-S(sol) free energy of system = (1) + (5) -14.535 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.21 seconds