Wall clock time and date at job start Sun Mar 7 2021 04:35:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35965 * 117.00244 * 2 1 4 4 C 1.39440 * 120.12148 * 179.97438 * 3 2 1 5 5 O 1.34781 * 133.24350 * 0.02562 * 4 3 2 6 6 C 1.34940 * 110.83692 * 179.26447 * 5 4 3 7 7 C 1.46999 * 125.13509 * 180.12420 * 6 5 4 8 8 O 1.21644 * 119.99808 * 180.63997 * 7 6 5 9 9 N 1.34778 * 119.99987 * 0.64476 * 7 6 5 10 10 C 1.46496 * 119.99799 * 179.97438 * 9 7 6 11 11 H 1.08995 * 112.85126 * 334.66319 * 10 9 7 12 12 C 1.53780 * 113.61660 * 105.86310 * 10 9 7 13 13 C 1.53956 * 87.02010 * 139.94814 * 12 10 9 14 14 H 1.09002 * 113.53495 * 89.19480 * 13 12 10 15 15 C 1.50697 * 113.74424 * 220.05249 * 13 12 10 16 16 N 1.30494 * 125.65060 * 192.29024 * 15 13 12 17 17 C 1.34132 * 109.25662 * 179.89949 * 16 15 13 18 18 C 1.34670 * 108.02151 * 0.36602 * 17 16 15 19 19 N 1.35050 * 125.64772 * 12.60555 * 15 13 12 20 20 C 1.53782 * 87.11298 * 334.63639 * 13 12 10 21 21 C 1.35807 * 109.72160 * 0.68680 * 6 5 4 22 22 C 1.40610 * 119.14022 * 179.77689 * 4 3 2 23 23 C 1.39781 * 120.11643 * 0.52402 * 22 4 3 24 24 C 1.50699 * 120.09688 * 179.72165 * 23 22 4 25 25 O 1.42907 * 109.46603 * 74.73108 * 24 23 22 26 26 Si 1.86298 * 109.47032 * 194.72411 * 24 23 22 27 27 C 1.36638 * 119.80978 * 359.44856 * 23 22 4 28 28 C 1.38264 * 120.11913 * 0.02562 * 3 2 1 29 29 H 1.09002 * 109.47324 * 299.99563 * 1 2 3 30 30 H 1.09000 * 109.47218 * 59.99436 * 1 2 3 31 31 H 1.09003 * 109.47249 * 179.97438 * 1 2 3 32 32 H 0.97002 * 120.00011 * 359.97438 * 9 7 6 33 33 H 1.09000 * 113.61491 * 254.53244 * 12 10 9 34 34 H 1.09003 * 113.61171 * 25.42767 * 12 10 9 35 35 H 1.07999 * 125.99483 * 180.12034 * 17 16 15 36 36 H 1.08002 * 126.59210 * 179.81535 * 18 17 16 37 37 H 0.96998 * 126.40097 * 359.93689 * 19 15 13 38 38 H 1.08995 * 113.61621 * 270.81099 * 20 13 12 39 39 H 1.09001 * 113.68824 * 139.91800 * 20 13 12 40 40 H 1.07991 * 126.95538 * 179.42473 * 21 6 5 41 41 H 1.08996 * 109.47117 * 314.73021 * 24 23 22 42 42 H 0.96697 * 114.00527 * 59.99993 * 25 24 23 43 43 H 1.48506 * 109.99834 * 58.68765 * 26 24 23 44 44 H 1.48502 * 110.00011 * 180.02562 * 26 24 23 45 45 H 1.07997 * 119.75246 * 180.27524 * 27 23 22 46 46 H 1.08002 * 119.65917 * 359.95676 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 3.4386 1.2873 0.0005 5 8 4.4141 0.3572 0.0007 6 6 5.6317 0.9386 -0.0149 7 6 6.9131 0.2183 -0.0219 8 8 7.9595 0.8386 -0.0244 9 7 6.9286 -1.1294 -0.0256 10 6 8.2056 -1.8472 -0.0331 11 1 9.0175 -1.2621 -0.4649 12 6 8.5598 -2.4885 1.3190 13 6 9.0751 -3.6987 0.5190 14 1 10.1257 -3.6203 0.2392 15 6 8.7331 -5.0278 1.1416 16 7 9.2359 -6.1814 0.7961 17 6 8.7044 -7.1436 1.5648 18 6 7.8335 -6.5652 2.4136 19 7 7.8512 -5.2230 2.1455 20 6 8.1068 -3.2743 -0.5978 21 6 5.4945 2.2897 -0.0106 22 6 4.0555 2.5509 -0.0043 23 6 3.2767 3.7116 0.0016 24 6 3.9383 5.0656 0.0028 25 8 4.4615 5.3411 -1.2982 26 14 2.6862 6.3681 0.4571 27 6 1.9137 3.6151 0.0005 28 6 1.2957 2.3726 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 6.0941 -1.6240 -0.0233 33 1 9.3418 -1.9580 1.8623 34 1 7.6904 -2.7119 1.9373 35 1 8.9318 -8.1979 1.5098 36 1 7.2362 -7.0644 3.1623 37 1 7.3282 -4.5397 2.5933 38 1 7.1134 -3.7129 -0.5044 39 1 8.5223 -3.3769 -1.6002 40 1 6.2874 3.0228 -0.0115 41 1 4.7502 5.0726 0.7300 42 1 3.7933 5.3507 -1.9971 43 1 2.1112 6.0753 1.7946 44 1 3.3261 7.7082 0.4612 45 1 1.3129 4.5125 0.0006 46 1 0.2174 2.3120 0.0002 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14772358_6672420.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:35:21 Heat of formation + Delta-G solvation = 23.802001 kcal Electronic energy + Delta-G solvation = -32484.733855 eV Core-core repulsion = 27924.226648 eV Total energy + Delta-G solvation = -4560.507207 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 370.141 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -43.79317 -43.12435 -41.27277 -40.58358 -39.36030 -39.07998 -37.01161 -34.96018 -33.68781 -33.48230 -31.95729 -31.18263 -30.49072 -28.59045 -26.89736 -26.74318 -26.19409 -24.67729 -24.01708 -22.66649 -22.14779 -21.81730 -21.63400 -20.90156 -19.74782 -19.14591 -18.96735 -18.53275 -17.85085 -17.75020 -17.33847 -16.93791 -16.66987 -16.52453 -16.22233 -15.89786 -15.84669 -15.79373 -15.73809 -14.94745 -14.84289 -14.65324 -14.56370 -14.49364 -14.18926 -14.10645 -13.63414 -13.58740 -13.56120 -13.42301 -13.28263 -12.63120 -12.41992 -12.30494 -12.11543 -12.09957 -11.92088 -11.80604 -11.59937 -11.06772 -11.05112 -11.04301 -10.45402 -10.38388 -9.85834 -9.37712 -9.02637 -5.00720 -0.71360 0.08072 0.57030 1.05943 1.13415 1.29651 1.67444 1.80878 1.83550 1.99817 2.09971 2.11917 2.18890 2.38041 3.10325 3.25398 3.32291 3.41275 3.51711 3.61363 3.67444 3.70581 3.78472 3.85305 3.90720 3.97394 4.15806 4.21642 4.32467 4.39676 4.42246 4.43366 4.46388 4.51228 4.54183 4.58619 4.72256 4.76335 4.78739 4.80178 4.84728 4.91401 4.96834 5.02735 5.11935 5.19486 5.26763 5.37069 5.55470 5.76684 6.14202 6.26022 6.44686 6.75020 6.78103 7.10861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.334 6.334 3 C 0.136 3.864 4 C 0.020 3.980 5 O -0.180 6.180 6 C -0.034 4.034 7 C 0.605 3.395 8 O -0.542 6.542 9 N -0.692 5.692 10 C 0.122 3.878 11 H 0.118 0.882 12 C -0.140 4.140 13 C -0.021 4.021 14 H 0.125 0.875 15 C 0.211 3.789 16 N -0.530 5.530 17 C -0.062 4.062 18 C -0.043 4.043 19 N -0.557 5.557 20 C -0.121 4.121 21 C -0.115 4.115 22 C -0.099 4.099 23 C -0.108 4.108 24 C -0.080 4.080 25 O -0.555 6.555 26 Si 0.795 3.205 27 C -0.079 4.079 28 C -0.165 4.165 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.114 0.886 32 H 0.417 0.583 33 H 0.088 0.912 34 H 0.095 0.905 35 H 0.178 0.822 36 H 0.210 0.790 37 H 0.430 0.570 38 H 0.095 0.905 39 H 0.092 0.908 40 H 0.169 0.831 41 H 0.097 0.903 42 H 0.396 0.604 43 H -0.280 1.280 44 H -0.301 1.301 45 H 0.176 0.824 46 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.394 0.560 0.952 11.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.248 6.248 3 C 0.090 3.910 4 C -0.028 4.028 5 O -0.082 6.082 6 C -0.084 4.084 7 C 0.390 3.610 8 O -0.421 6.421 9 N -0.342 5.342 10 C 0.018 3.982 11 H 0.136 0.864 12 C -0.179 4.179 13 C -0.041 4.041 14 H 0.143 0.857 15 C -0.053 4.053 16 N -0.250 5.250 17 C -0.209 4.209 18 C -0.177 4.177 19 N -0.162 5.162 20 C -0.160 4.160 21 C -0.136 4.136 22 C -0.100 4.100 23 C -0.109 4.109 24 C -0.189 4.189 25 O -0.363 6.363 26 Si 0.699 3.301 27 C -0.096 4.096 28 C -0.183 4.183 29 H 0.093 0.907 30 H 0.096 0.904 31 H 0.132 0.868 32 H 0.255 0.745 33 H 0.106 0.894 34 H 0.113 0.887 35 H 0.195 0.805 36 H 0.226 0.774 37 H 0.271 0.729 38 H 0.113 0.887 39 H 0.111 0.889 40 H 0.187 0.813 41 H 0.115 0.885 42 H 0.246 0.754 43 H -0.206 1.206 44 H -0.230 1.230 45 H 0.192 0.808 46 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -9.685 0.921 1.211 9.804 hybrid contribution -0.365 -0.416 1.106 1.236 sum -10.050 0.505 2.317 10.326 Atomic orbital electron populations 1.23492 0.75267 1.05993 1.03260 1.86141 1.24352 1.25835 1.88462 1.17996 0.86044 0.86937 1.00023 1.19220 0.88298 0.87050 1.08231 1.84008 1.12674 1.35017 1.76547 1.21952 0.84108 0.92673 1.09650 1.16680 0.84923 0.82873 0.76474 1.90898 1.31340 1.68244 1.51624 1.45818 1.10869 1.04760 1.72763 1.22626 0.86186 0.91836 0.97530 0.86377 1.23577 1.02214 0.95056 0.97082 1.20795 1.01742 0.85216 0.96378 0.85721 1.23103 0.93825 0.96162 0.92219 1.70179 1.27669 0.99186 1.28010 1.22759 1.00488 1.00091 0.97591 1.23291 1.05741 0.83242 1.05459 1.43270 1.34302 1.09228 1.29405 1.23368 1.00354 0.92784 0.99540 1.22853 0.95457 0.94516 1.00746 1.19597 0.92322 0.92954 1.05119 1.19690 0.93792 0.93927 1.03488 1.25354 1.05827 0.98610 0.89065 1.86505 1.39678 1.93342 1.16770 0.93840 0.80387 0.73144 0.82698 1.20799 0.92432 0.98639 0.97731 1.21436 1.01991 0.89533 1.05372 0.90668 0.90424 0.86757 0.74544 0.89358 0.88669 0.80460 0.77375 0.72899 0.88683 0.88917 0.81335 0.88504 0.75428 1.20624 1.22961 0.80759 0.79925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.11 9.81 113.37 1.11 1.00 16 2 O -0.33 -0.39 10.50 -93.16 -0.98 -1.37 16 3 C 0.14 0.24 6.70 22.57 0.15 0.39 16 4 C 0.02 0.13 7.35 23.14 0.17 0.30 16 5 O -0.18 -1.29 10.28 -13.59 -0.14 -1.43 16 6 C -0.03 -0.25 7.07 24.00 0.17 -0.08 16 7 C 0.60 4.14 7.80 86.54 0.67 4.81 16 8 O -0.54 -7.03 16.44 -4.17 -0.07 -7.10 16 9 N -0.69 -0.07 5.36 -443.71 -2.38 -2.45 16 10 C 0.12 -0.21 4.21 45.52 0.19 -0.02 16 11 H 0.12 0.09 7.50 -2.39 -0.02 0.07 16 12 C -0.14 0.53 7.37 31.18 0.23 0.76 16 13 C -0.02 0.03 4.29 -10.95 -0.05 -0.02 16 14 H 0.12 -0.13 8.14 -2.39 -0.02 -0.15 16 15 C 0.21 0.70 7.37 138.13 1.02 1.72 16 16 N -0.53 -5.09 11.25 -188.13 -2.12 -7.21 16 17 C -0.06 -0.34 11.87 83.52 0.99 0.66 16 18 C -0.04 0.02 12.04 83.09 1.00 1.02 16 19 N -0.56 0.87 5.94 -186.27 -1.11 -0.23 16 20 C -0.12 0.39 7.38 31.12 0.23 0.62 16 21 C -0.11 -0.90 10.68 23.79 0.25 -0.65 16 22 C -0.10 -0.57 6.16 -20.24 -0.12 -0.69 16 23 C -0.11 -0.05 5.26 -19.87 -0.10 -0.16 16 24 C -0.08 0.01 2.71 71.24 0.19 0.21 16 25 O -0.55 -0.53 12.88 -148.98 -1.92 -2.44 16 26 Si 0.79 -3.43 29.92 68.60 2.05 -1.37 16 27 C -0.08 0.41 8.62 22.02 0.19 0.60 16 28 C -0.16 0.80 9.03 22.40 0.20 1.00 16 29 H 0.07 -0.84 7.66 -2.39 -0.02 -0.86 16 30 H 0.08 -0.89 7.66 -2.39 -0.02 -0.91 16 31 H 0.11 -1.19 8.14 -2.39 -0.02 -1.21 16 32 H 0.42 -1.37 8.43 -92.71 -0.78 -2.15 16 33 H 0.09 -0.27 8.14 -2.39 -0.02 -0.29 16 34 H 0.09 -0.63 6.66 -2.39 -0.02 -0.64 16 35 H 0.18 0.35 8.06 -2.91 -0.02 0.33 16 36 H 0.21 -1.64 8.06 -2.91 -0.02 -1.66 16 37 H 0.43 -3.22 7.55 -92.71 -0.70 -3.92 16 38 H 0.09 -0.39 8.06 -2.39 -0.02 -0.41 16 39 H 0.09 -0.29 8.14 -2.39 -0.02 -0.31 16 40 H 0.17 1.30 8.06 -2.92 -0.02 1.28 16 41 H 0.10 0.25 7.96 -2.39 -0.02 0.23 16 42 H 0.40 -3.16 8.70 -74.06 -0.64 -3.80 16 43 H -0.28 0.03 7.11 99.48 0.71 0.73 16 44 H -0.30 -1.20 7.11 99.48 0.71 -0.49 16 45 H 0.18 -2.20 5.07 -2.91 -0.01 -2.22 16 46 H 0.18 -2.24 6.26 -2.91 -0.02 -2.26 16 Total: 0.00 -29.62 390.75 -1.15 -30.78 By element: Atomic # 1 Polarization: -17.64 SS G_CDS: -1.00 Total: -18.64 kcal Atomic # 6 Polarization: 4.97 SS G_CDS: 6.50 Total: 11.47 kcal Atomic # 7 Polarization: -4.29 SS G_CDS: -5.60 Total: -9.89 kcal Atomic # 8 Polarization: -9.24 SS G_CDS: -3.11 Total: -12.34 kcal Atomic # 14 Polarization: -3.43 SS G_CDS: 2.05 Total: -1.37 kcal Total: -29.62 -1.15 -30.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14772358_6672420.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.579 kcal (2) G-P(sol) polarization free energy of solvation -29.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds