Wall clock time and date at job start Sun Mar 7 2021 04:35:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= 0
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50700 * 1
3 3 C 1.33816 * 122.44730 * 2 1
4 4 C 1.50703 * 124.52557 * 359.97438 * 3 2 1
5 5 O 1.42901 * 109.46471 * 314.86589 * 4 3 2
6 6 Si 1.86298 * 109.47057 * 194.87157 * 4 3 2
7 7 S 1.70617 * 110.95257 * 179.74382 * 3 2 1
8 8 C 1.75831 * 91.56328 * 0.30973 * 7 3 2
9 9 C 1.46579 * 125.45863 * 179.97438 * 8 7 3
10 10 O 1.21704 * 120.00458 * 179.69141 * 9 8 7
11 11 N 1.34780 * 120.00107 * 359.69100 * 9 8 7
12 12 C 1.46498 * 120.00151 * 180.02562 * 11 9 8
13 13 H 1.09003 * 112.84975 * 23.80116 * 12 11 9
14 14 C 1.53778 * 113.61564 * 154.99684 * 12 11 9
15 15 C 1.53780 * 87.08184 * 140.06374 * 14 12 11
16 16 H 1.09000 * 113.61774 * 89.20141 * 15 14 12
17 17 C 1.50704 * 113.61667 * 220.02183 * 15 14 12
18 18 N 1.30499 * 125.64733 * 263.49368 * 17 15 14
19 19 C 1.34125 * 109.25516 * 179.97438 * 18 17 15
20 20 C 1.34671 * 108.02016 * 0.02562 * 19 18 17
21 21 N 1.35043 * 125.65265 * 83.46954 * 17 15 14
22 22 C 1.53779 * 87.17224 * 334.61162 * 15 14 12
23 23 C 1.36642 * 109.08320 * 359.69436 * 8 7 3
24 24 H 1.09008 * 109.46736 * 275.76780 * 1 2 3
25 25 H 1.08994 * 109.47245 * 35.76347 * 1 2 3
26 26 H 1.09000 * 109.47158 * 155.76665 * 1 2 3
27 27 H 1.08990 * 109.47254 * 74.86396 * 4 3 2
28 28 H 0.96702 * 113.99645 * 179.97438 * 5 4 3
29 29 H 1.48502 * 109.99656 * 298.67270 * 6 4 3
30 30 H 1.48494 * 110.00377 * 59.99556 * 6 4 3
31 31 H 0.97005 * 119.99955 * 359.97438 * 11 9 8
32 32 H 1.09000 * 113.61634 * 25.51846 * 14 12 11
33 33 H 1.08996 * 113.69277 * 254.62394 * 14 12 11
34 34 H 1.07999 * 125.99015 * 180.02562 * 19 18 17
35 35 H 1.08005 * 126.59008 * 179.73610 * 20 19 18
36 36 H 0.96998 * 126.39394 * 0.05723 * 21 17 15
37 37 H 1.08998 * 113.61455 * 139.93888 * 22 15 14
38 38 H 1.09008 * 113.61318 * 270.83977 * 22 15 14
39 39 H 1.08002 * 123.35072 * 180.20596 * 23 8 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.2250 1.1293 0.0000
4 6 1.6355 2.5162 -0.0006
5 8 0.5748 2.5824 -0.9559
6 14 2.9551 3.7516 -0.4511
7 16 3.8969 0.7893 0.0071
8 6 3.5937 -0.9427 0.0006
9 6 4.6231 -1.9862 0.0021
10 8 4.3002 -3.1596 0.0028
11 7 5.9273 -1.6462 0.0025
12 6 6.9561 -2.6891 0.0034
13 1 6.5993 -3.6361 -0.4018
14 6 8.2981 -2.2311 -0.5917
15 6 8.9793 -3.0298 0.5321
16 1 9.1770 -4.0694 0.2711
17 6 10.1798 -2.3365 1.1233
18 7 11.4227 -2.5485 0.7868
19 6 12.2202 -1.7556 1.5177
20 6 11.4420 -1.0249 2.3387
21 7 10.1475 -1.3926 2.0885
22 6 7.6909 -2.8339 1.3485
23 6 2.2446 -1.1600 0.0003
24 1 -0.3633 0.1033 1.0226
25 1 -0.3633 0.8338 -0.6006
26 1 -0.3633 -0.9371 -0.4218
27 1 1.2460 2.7459 0.9912
28 1 0.1479 3.4484 -1.0102
29 1 4.0490 3.7150 0.5525
30 1 3.4941 3.4494 -1.8014
31 1 6.1847 -0.7110 0.0015
32 1 8.4615 -1.1556 -0.5238
33 1 8.4930 -2.6268 -1.5884
34 1 13.2977 -1.7110 1.4582
35 1 11.7755 -0.2924 3.0589
36 1 9.3550 -1.0416 2.5239
37 1 7.3951 -3.7163 1.9159
38 1 7.6879 -1.9234 1.9478
39 1 1.8020 -2.1452 0.0000
There are 55 doubly filled levels
RHF calculation, no. of doubly occupied orbitals= 55
No. of singly occupied orbitals= 1
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
s_22_14772358_6739946.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 7 2021 04:35:25
Heat of formation + Delta-G solvation = 55.038445 kcal
Electronic energy + Delta-G solvation = -23614.110432 eV
Core-core repulsion = 20037.926650 eV
Total energy + Delta-G solvation = -3576.183782 eV
No. of doubly occupied orbitals = 55
and no. of open levels = 1
Molecular weight
(most abundant/longest-lived isotopes) = 320.098 amu
Computer time = 0.68 seconds
Orbital eigenvalues (eV)
-43.11976 -41.20685 -40.01504 -39.12040 -37.49904 -34.79589 -33.44179 -32.35617
-30.59991 -30.23295 -27.27257 -26.99845 -25.59381 -24.25858 -22.66939 -22.00720
-21.60064 -20.93983 -19.97572 -19.33087 -18.99521 -18.58413 -17.46151 -17.18506
-16.60582 -16.13583 -15.97569 -15.93704 -15.79830 -15.06700 -14.98391 -14.72825
-14.69675 -14.55850 -14.44479 -14.10671 -13.76708 -13.60723 -13.23222 -13.06521
-12.98908 -12.58384 -12.57582 -12.20200 -12.15203 -12.09998 -11.85332 -11.14088
-10.97951 -10.97482 -10.64313 -10.27942 -9.78081 -9.48713 -9.35858 -5.40917
-0.68527 0.24843 0.59242 0.97111 1.05105 1.25081 1.40477 1.73172
1.88515 2.09011 2.12094 2.18200 3.11199 3.16094 3.26120 3.44965
3.56898 3.59342 3.67751 3.85065 4.08193 4.09161 4.20620 4.33821
4.34735 4.44925 4.46554 4.50287 4.55768 4.65478 4.73160 4.77950
4.80057 4.83365 4.98557 5.01940 5.14268 5.31179 5.35687 5.46512
5.78979 6.24875 6.34138 6.39316 7.00739 7.14245
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.105 4.105
2 C -0.081 4.081
3 C -0.193 4.193
4 C -0.033 4.033
5 O -0.537 6.537
6 Si 0.669 3.331
7 S 0.171 5.829
8 C -0.260 4.260
9 C 0.595 3.405
10 O -0.521 6.521
11 N -0.718 5.718
12 C 0.127 3.873
13 H 0.128 0.872
14 C -0.134 4.134
15 C -0.021 4.021
16 H 0.127 0.873
17 C 0.219 3.781
18 N -0.485 5.485
19 C -0.026 4.026
20 C -0.056 4.056
21 N -0.566 5.566
22 C -0.150 4.150
23 C -0.045 4.045
24 H 0.068 0.932
25 H 0.096 0.904
26 H 0.065 0.935
27 H 0.086 0.914
28 H 0.385 0.615
29 H -0.237 1.237
30 H -0.236 1.236
31 H 0.398 0.602
32 H 0.087 0.913
33 H 0.091 0.909
34 H 0.172 0.828
35 H 0.178 0.822
36 H 0.417 0.583
37 H 0.088 0.912
38 H 0.080 0.920
39 H 0.158 0.842
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.559 7.912 2.536 8.693
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.164 4.164
2 C -0.093 4.093
3 C -0.312 4.312
4 C -0.145 4.145
5 O -0.344 6.344
6 Si 0.567 3.433
7 S 0.438 5.562
8 C -0.380 4.380
9 C 0.382 3.618
10 O -0.398 6.398
11 N -0.369 5.369
12 C 0.023 3.977
13 H 0.145 0.855
14 C -0.173 4.173
15 C -0.042 4.042
16 H 0.145 0.855
17 C -0.045 4.045
18 N -0.204 5.204
19 C -0.174 4.174
20 C -0.190 4.190
21 N -0.170 5.170
22 C -0.190 4.190
23 C -0.078 4.078
24 H 0.086 0.914
25 H 0.115 0.885
26 H 0.084 0.916
27 H 0.103 0.897
28 H 0.234 0.766
29 H -0.161 1.161
30 H -0.159 1.159
31 H 0.232 0.768
32 H 0.105 0.895
33 H 0.109 0.891
34 H 0.189 0.811
35 H 0.195 0.805
36 H 0.255 0.745
37 H 0.107 0.893
38 H 0.098 0.902
39 H 0.176 0.824
Dipole moment (debyes) X Y Z Total
from point charges -0.089 6.895 1.627 7.085
hybrid contribution -1.803 0.111 1.214 2.176
sum -1.892 7.006 2.841 7.793
Atomic orbital electron populations
1.20751 0.88547 1.04202 1.02869 1.18743 0.98629 0.90333 1.01640
1.23114 0.97613 0.98692 1.11781 1.23972 0.97980 0.96705 0.95885
1.86461 1.49952 1.37930 1.60085 0.94730 0.78770 0.87248 0.82503
1.82880 1.03775 0.99596 1.69915 1.24616 0.98059 0.96476 1.18804
1.16962 0.81627 0.87407 0.75827 1.90864 1.81523 1.18031 1.49359
1.45827 1.05299 1.09862 1.75901 1.22562 0.85689 0.93131 0.96356
0.85455 1.23441 0.93307 1.00923 0.99617 1.20758 0.87117 1.00229
0.96049 0.85476 1.22847 0.94857 0.93894 0.92864 1.70253 0.99692
1.24477 1.25987 1.22429 1.00072 0.97596 0.97311 1.22823 0.83285
1.06408 1.06468 1.43265 1.08989 1.32743 1.31989 1.23617 0.94538
1.03223 0.97614 1.20780 0.90879 1.00183 0.95967 0.91351 0.88531
0.91564 0.89666 0.76620 1.16122 1.15938 0.76764 0.89476 0.89075
0.81111 0.80460 0.74527 0.89301 0.90164 0.82422
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -0.03 9.74 36.01 0.35 0.32 16
2 C -0.08 -0.15 5.74 -106.45 -0.61 -0.76 16
3 C -0.19 -0.23 5.65 -35.86 -0.20 -0.44 16
4 C -0.03 0.05 2.69 36.01 0.10 0.15 16
5 O -0.54 1.01 10.17 -35.23 -0.36 0.65 16
6 Si 0.67 -1.62 30.99 -169.99 -5.27 -6.89 16
7 S 0.17 0.13 19.36 -107.50 -2.08 -1.95 16
8 C -0.26 -0.63 6.45 -36.80 -0.24 -0.86 16
9 C 0.60 1.83 7.78 -12.90 -0.10 1.73 16
10 O -0.52 -3.30 16.44 5.19 0.09 -3.22 16
11 N -0.72 -0.02 5.36 -54.27 -0.29 -0.31 16
12 C 0.13 -0.09 4.24 -67.03 -0.28 -0.38 16
13 H 0.13 0.05 7.46 -51.93 -0.39 -0.34 16
14 C -0.13 0.20 7.38 -25.92 -0.19 0.01 16
15 C -0.02 0.02 4.28 -90.96 -0.39 -0.37 16
16 H 0.13 -0.10 8.14 -51.93 -0.42 -0.53 16
17 C 0.22 0.34 7.36 -155.41 -1.14 -0.81 16
18 N -0.48 -2.09 11.25 -10.81 -0.12 -2.21 16
19 C -0.03 -0.06 11.87 -17.81 -0.21 -0.27 16
20 C -0.06 0.00 12.04 -16.56 -0.20 -0.20 16
21 N -0.57 0.31 5.94 -10.23 -0.06 0.25 16
22 C -0.15 0.26 7.38 -25.83 -0.19 0.07 16
23 C -0.04 -0.11 9.78 -40.44 -0.40 -0.51 16
24 H 0.07 -0.03 8.14 -51.92 -0.42 -0.46 16
25 H 0.10 0.04 5.48 -51.93 -0.28 -0.25 16
26 H 0.07 -0.01 8.10 -51.93 -0.42 -0.43 16
27 H 0.09 -0.28 7.96 -51.93 -0.41 -0.69 16
28 H 0.39 -2.63 8.74 45.56 0.40 -2.23 16
29 H -0.24 0.16 7.11 56.52 0.40 0.56 16
30 H -0.24 -0.21 7.11 56.52 0.40 0.19 16
31 H 0.40 -0.72 7.84 -40.82 -0.32 -1.04 16
32 H 0.09 -0.16 8.07 -51.93 -0.42 -0.58 16
33 H 0.09 -0.14 8.14 -51.93 -0.42 -0.56 16
34 H 0.17 0.06 8.06 -52.49 -0.42 -0.36 16
35 H 0.18 -0.55 8.06 -52.48 -0.42 -0.97 16
36 H 0.42 -1.37 7.54 -40.82 -0.31 -1.67 16
37 H 0.09 -0.12 8.14 -51.93 -0.42 -0.54 16
38 H 0.08 -0.23 6.64 -51.92 -0.34 -0.57 16
39 H 0.16 0.32 8.06 -52.49 -0.42 -0.10 16
LS Contribution 340.68 15.07 5.13 5.13
Total: 0.00 -10.11 340.68 -11.33 -21.44
By element:
Atomic # 1 Polarization: -5.90 SS G_CDS: -4.66 Total: -10.56 kcal
Atomic # 6 Polarization: 1.39 SS G_CDS: -3.71 Total: -2.32 kcal
Atomic # 7 Polarization: -1.81 SS G_CDS: -0.47 Total: -2.28 kcal
Atomic # 8 Polarization: -2.30 SS G_CDS: -0.27 Total: -2.57 kcal
Atomic # 14 Polarization: -1.62 SS G_CDS: -5.27 Total: -6.89 kcal
Atomic # 16 Polarization: 0.13 SS G_CDS: -2.08 Total: -1.95 kcal
Total LS contribution 5.13 Total: 5.13 kcal
Total: -10.11 -11.33 -21.44 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
s_22_14772358_6739946.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 76.476 kcal
(2) G-P(sol) polarization free energy of solvation -10.111 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.365 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.327 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.438 kcal
(6) G-S(sol) free energy of system = (1) + (5) 55.038 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.68 seconds