Wall clock time and date at job start Sun Mar 7 2021 04:35:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= 0
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50700 * 1
3 3 C 1.33816 * 122.44730 * 2 1
4 4 C 1.50703 * 124.52557 * 359.97438 * 3 2 1
5 5 O 1.42901 * 109.46471 * 314.86589 * 4 3 2
6 6 Si 1.86298 * 109.47057 * 194.87157 * 4 3 2
7 7 S 1.70617 * 110.95257 * 179.74382 * 3 2 1
8 8 C 1.75831 * 91.56328 * 0.30973 * 7 3 2
9 9 C 1.46579 * 125.45863 * 179.97438 * 8 7 3
10 10 O 1.21704 * 120.00458 * 179.69141 * 9 8 7
11 11 N 1.34780 * 120.00107 * 359.69100 * 9 8 7
12 12 C 1.46498 * 120.00151 * 180.02562 * 11 9 8
13 13 H 1.09003 * 112.84975 * 23.80116 * 12 11 9
14 14 C 1.53778 * 113.61564 * 154.99684 * 12 11 9
15 15 C 1.53780 * 87.08184 * 140.06374 * 14 12 11
16 16 H 1.09000 * 113.61774 * 89.20141 * 15 14 12
17 17 C 1.50704 * 113.61667 * 220.02183 * 15 14 12
18 18 N 1.30499 * 125.64733 * 263.49368 * 17 15 14
19 19 C 1.34125 * 109.25516 * 179.97438 * 18 17 15
20 20 C 1.34671 * 108.02016 * 0.02562 * 19 18 17
21 21 N 1.35043 * 125.65265 * 83.46954 * 17 15 14
22 22 C 1.53779 * 87.17224 * 334.61162 * 15 14 12
23 23 C 1.36642 * 109.08320 * 359.69436 * 8 7 3
24 24 H 1.09008 * 109.46736 * 275.76780 * 1 2 3
25 25 H 1.08994 * 109.47245 * 35.76347 * 1 2 3
26 26 H 1.09000 * 109.47158 * 155.76665 * 1 2 3
27 27 H 1.08990 * 109.47254 * 74.86396 * 4 3 2
28 28 H 0.96702 * 113.99645 * 179.97438 * 5 4 3
29 29 H 1.48502 * 109.99656 * 298.67270 * 6 4 3
30 30 H 1.48494 * 110.00377 * 59.99556 * 6 4 3
31 31 H 0.97005 * 119.99955 * 359.97438 * 11 9 8
32 32 H 1.09000 * 113.61634 * 25.51846 * 14 12 11
33 33 H 1.08996 * 113.69277 * 254.62394 * 14 12 11
34 34 H 1.07999 * 125.99015 * 180.02562 * 19 18 17
35 35 H 1.08005 * 126.59008 * 179.73610 * 20 19 18
36 36 H 0.96998 * 126.39394 * 0.05723 * 21 17 15
37 37 H 1.08998 * 113.61455 * 139.93888 * 22 15 14
38 38 H 1.09008 * 113.61318 * 270.83977 * 22 15 14
39 39 H 1.08002 * 123.35072 * 180.20596 * 23 8 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.2250 1.1293 0.0000
4 6 1.6355 2.5162 -0.0006
5 8 0.5748 2.5824 -0.9559
6 14 2.9551 3.7516 -0.4511
7 16 3.8969 0.7893 0.0071
8 6 3.5937 -0.9427 0.0006
9 6 4.6231 -1.9862 0.0021
10 8 4.3002 -3.1596 0.0028
11 7 5.9273 -1.6462 0.0025
12 6 6.9561 -2.6891 0.0034
13 1 6.5993 -3.6361 -0.4018
14 6 8.2981 -2.2311 -0.5917
15 6 8.9793 -3.0298 0.5321
16 1 9.1770 -4.0694 0.2711
17 6 10.1798 -2.3365 1.1233
18 7 11.4227 -2.5485 0.7868
19 6 12.2202 -1.7556 1.5177
20 6 11.4420 -1.0249 2.3387
21 7 10.1475 -1.3926 2.0885
22 6 7.6909 -2.8339 1.3485
23 6 2.2446 -1.1600 0.0003
24 1 -0.3633 0.1033 1.0226
25 1 -0.3633 0.8338 -0.6006
26 1 -0.3633 -0.9371 -0.4218
27 1 1.2460 2.7459 0.9912
28 1 0.1479 3.4484 -1.0102
29 1 4.0490 3.7150 0.5525
30 1 3.4941 3.4494 -1.8014
31 1 6.1847 -0.7110 0.0015
32 1 8.4615 -1.1556 -0.5238
33 1 8.4930 -2.6268 -1.5884
34 1 13.2977 -1.7110 1.4582
35 1 11.7755 -0.2924 3.0589
36 1 9.3550 -1.0416 2.5239
37 1 7.3951 -3.7163 1.9159
38 1 7.6879 -1.9234 1.9478
39 1 1.8020 -2.1452 0.0000
There are 55 doubly filled levels
RHF calculation, no. of doubly occupied orbitals= 55
No. of singly occupied orbitals= 1
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
s_22_14772358_6739946.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 7 2021 04:35:25
Heat of formation + Delta-G solvation = 54.171266 kcal
Electronic energy + Delta-G solvation = -23614.148036 eV
Core-core repulsion = 20037.926650 eV
Total energy + Delta-G solvation = -3576.221385 eV
No. of doubly occupied orbitals = 55
and no. of open levels = 1
Molecular weight
(most abundant/longest-lived isotopes) = 320.098 amu
Computer time = 0.72 seconds
Orbital eigenvalues (eV)
-43.14816 -41.33009 -40.02653 -39.19024 -37.38659 -34.94107 -33.50216 -32.40292
-30.62451 -30.21101 -27.32199 -26.91198 -25.58437 -24.28736 -22.69363 -22.11804
-21.67085 -20.93788 -20.00002 -19.38025 -18.99185 -18.43684 -17.49912 -17.23383
-16.63430 -16.25758 -16.01429 -15.92975 -15.82955 -15.07493 -14.98790 -14.74587
-14.71616 -14.51666 -14.48631 -14.12703 -13.66234 -13.60512 -13.29551 -13.02281
-12.99202 -12.58365 -12.56208 -12.23728 -12.12528 -12.05936 -11.81880 -11.37146
-11.07822 -11.06525 -10.53902 -10.35488 -9.81750 -9.53926 -9.39101 -5.22811
-0.80055 0.18157 0.51074 1.02731 1.05094 1.23634 1.54483 1.81974
1.87307 1.92283 2.08669 2.17335 3.19721 3.28199 3.29980 3.49650
3.56388 3.69692 3.72069 3.89790 4.03853 4.19840 4.25902 4.39386
4.43331 4.47587 4.51814 4.54183 4.56097 4.69310 4.73826 4.76874
4.83845 4.88432 4.94946 4.97602 5.11291 5.29953 5.32313 5.45565
5.75251 6.17494 6.43333 6.86007 6.86534 7.09491
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.102 4.102
2 C -0.096 4.096
3 C -0.203 4.203
4 C -0.040 4.040
5 O -0.552 6.552
6 Si 0.751 3.249
7 S 0.193 5.807
8 C -0.279 4.279
9 C 0.593 3.407
10 O -0.563 6.563
11 N -0.704 5.704
12 C 0.123 3.877
13 H 0.114 0.886
14 C -0.123 4.123
15 C -0.020 4.020
16 H 0.123 0.877
17 C 0.211 3.789
18 N -0.531 5.531
19 C -0.063 4.063
20 C -0.042 4.042
21 N -0.557 5.557
22 C -0.139 4.139
23 C -0.056 4.056
24 H 0.076 0.924
25 H 0.098 0.902
26 H 0.065 0.935
27 H 0.109 0.891
28 H 0.407 0.593
29 H -0.257 1.257
30 H -0.284 1.284
31 H 0.408 0.592
32 H 0.095 0.905
33 H 0.090 0.910
34 H 0.178 0.822
35 H 0.211 0.789
36 H 0.430 0.570
37 H 0.086 0.914
38 H 0.096 0.904
39 H 0.153 0.847
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.013 10.023 3.485 11.031
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.161 4.161
2 C -0.109 4.109
3 C -0.322 4.322
4 C -0.152 4.152
5 O -0.363 6.363
6 Si 0.653 3.347
7 S 0.461 5.539
8 C -0.398 4.398
9 C 0.380 3.620
10 O -0.443 6.443
11 N -0.355 5.355
12 C 0.019 3.981
13 H 0.131 0.869
14 C -0.162 4.162
15 C -0.041 4.041
16 H 0.141 0.859
17 C -0.053 4.053
18 N -0.251 5.251
19 C -0.210 4.210
20 C -0.176 4.176
21 N -0.162 5.162
22 C -0.178 4.178
23 C -0.090 4.090
24 H 0.095 0.905
25 H 0.116 0.884
26 H 0.084 0.916
27 H 0.127 0.873
28 H 0.259 0.741
29 H -0.182 1.182
30 H -0.210 1.210
31 H 0.245 0.755
32 H 0.114 0.886
33 H 0.109 0.891
34 H 0.195 0.805
35 H 0.228 0.772
36 H 0.271 0.729
37 H 0.105 0.895
38 H 0.115 0.885
39 H 0.170 0.830
Dipole moment (debyes) X Y Z Total
from point charges -0.557 9.056 2.597 9.437
hybrid contribution -1.634 -0.473 0.887 1.919
sum -2.191 8.583 3.484 9.519
Atomic orbital electron populations
1.20753 0.87650 1.04237 1.03412 1.18901 0.99418 0.90230 1.02307
1.23604 0.97848 1.00106 1.10604 1.24160 0.98686 0.95061 0.97312
1.86410 1.49916 1.40041 1.59962 0.93749 0.76857 0.85675 0.78371
1.82725 1.03776 0.98051 1.69347 1.24649 0.97951 0.97539 1.19669
1.17137 0.82509 0.86986 0.75350 1.90834 1.82251 1.19617 1.51629
1.45751 1.04510 1.10648 1.74552 1.22570 0.85646 0.92507 0.97403
0.86857 1.23386 0.92194 1.01287 0.99374 1.20751 0.86794 1.00009
0.96525 0.85890 1.23067 0.94614 0.94358 0.93296 1.70180 1.01173
1.26085 1.27671 1.22763 1.00879 0.98757 0.98577 1.23299 0.82963
1.05659 1.05662 1.43252 1.09555 1.32019 1.31326 1.23572 0.93292
1.03912 0.97066 1.20903 0.91286 1.00481 0.96322 0.90518 0.88379
0.91641 0.87307 0.74068 1.18246 1.21033 0.75526 0.88625 0.89114
0.80464 0.77249 0.72861 0.89537 0.88515 0.82989
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.10 -0.06 9.74 71.24 0.69 0.64 16
2 C -0.10 -0.38 5.74 -21.05 -0.12 -0.50 16
3 C -0.20 -0.41 5.65 24.68 0.14 -0.28 16
4 C -0.04 0.18 2.69 71.24 0.19 0.37 16
5 O -0.55 2.82 10.17 -148.98 -1.51 1.31 16
6 Si 0.75 -4.44 30.99 68.60 2.13 -2.31 16
7 S 0.19 0.28 19.36 -56.49 -1.09 -0.82 16
8 C -0.28 -1.63 6.45 24.07 0.16 -1.48 16
9 C 0.59 4.45 7.78 86.42 0.67 5.12 16
10 O -0.56 -8.37 16.44 -4.36 -0.07 -8.44 16
11 N -0.70 -0.40 5.36 -443.81 -2.38 -2.78 16
12 C 0.12 -0.10 4.24 45.58 0.19 0.10 16
13 H 0.11 0.29 7.46 -2.39 -0.02 0.27 16
14 C -0.12 0.34 7.38 31.12 0.23 0.57 16
15 C -0.02 0.02 4.28 -11.01 -0.05 -0.03 16
16 H 0.12 -0.04 8.14 -2.39 -0.02 -0.06 16
17 C 0.21 0.68 7.36 138.13 1.02 1.70 16
18 N -0.53 -5.08 11.25 -188.13 -2.12 -7.20 16
19 C -0.06 -0.32 11.87 83.52 0.99 0.67 16
20 C -0.04 0.04 12.04 83.09 1.00 1.04 16
21 N -0.56 1.13 5.94 -186.27 -1.11 0.02 16
22 C -0.14 0.47 7.38 31.18 0.23 0.71 16
23 C -0.06 -0.36 9.78 21.72 0.21 -0.15 16
24 H 0.08 -0.11 8.14 -2.38 -0.02 -0.13 16
25 H 0.10 0.03 5.48 -2.39 -0.01 0.01 16
26 H 0.06 0.02 8.10 -2.39 -0.02 0.01 16
27 H 0.11 -0.97 7.96 -2.39 -0.02 -0.99 16
28 H 0.41 -6.34 8.74 -74.06 -0.65 -6.99 16
29 H -0.26 0.67 7.11 99.48 0.71 1.38 16
30 H -0.28 -0.60 7.11 99.48 0.71 0.11 16
31 H 0.41 -1.56 7.84 -92.70 -0.73 -2.29 16
32 H 0.10 -0.40 8.07 -2.39 -0.02 -0.42 16
33 H 0.09 -0.21 8.14 -2.39 -0.02 -0.23 16
34 H 0.18 0.31 8.06 -2.91 -0.02 0.29 16
35 H 0.21 -1.78 8.06 -2.91 -0.02 -1.81 16
36 H 0.43 -3.53 7.54 -92.71 -0.70 -4.23 16
37 H 0.09 -0.21 8.14 -2.39 -0.02 -0.22 16
38 H 0.10 -0.66 6.64 -2.38 -0.02 -0.68 16
39 H 0.15 0.98 8.06 -2.91 -0.02 0.95 16
Total: 0.00 -25.24 340.68 -1.51 -26.75
By element:
Atomic # 1 Polarization: -14.12 SS G_CDS: -0.91 Total: -15.03 kcal
Atomic # 6 Polarization: 2.93 SS G_CDS: 5.56 Total: 8.49 kcal
Atomic # 7 Polarization: -4.35 SS G_CDS: -5.60 Total: -9.95 kcal
Atomic # 8 Polarization: -5.54 SS G_CDS: -1.59 Total: -7.13 kcal
Atomic # 14 Polarization: -4.44 SS G_CDS: 2.13 Total: -2.31 kcal
Atomic # 16 Polarization: 0.28 SS G_CDS: -1.09 Total: -0.82 kcal
Total: -25.24 -1.51 -26.75 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
s_22_14772358_6739946.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 80.919 kcal
(2) G-P(sol) polarization free energy of solvation -25.238 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.681 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.510 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.748 kcal
(6) G-S(sol) free energy of system = (1) + (5) 54.171 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.72 seconds