Wall clock time and date at job start Sun Mar 7 2021 04:35:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.37926 * 120.07657 * 2 1 4 4 C 1.38379 * 120.14770 * 180.27595 * 3 2 1 5 5 C 1.50700 * 119.86023 * 179.72044 * 4 3 2 6 6 C 1.38345 * 120.28991 * 359.74189 * 4 3 2 7 7 C 1.50701 * 119.92724 * 179.97438 * 6 4 3 8 8 O 1.42901 * 109.46805 * 75.02035 * 7 6 4 9 9 Si 1.86295 * 109.47023 * 195.02085 * 7 6 4 10 10 C 1.37976 * 120.14267 * 0.02562 * 6 4 3 11 11 C 1.39552 * 119.85379 * 359.97438 * 10 6 4 12 12 C 1.47849 * 120.14257 * 179.97438 * 11 10 6 13 13 O 1.21556 * 119.99733 * 173.75376 * 12 11 10 14 14 N 1.34776 * 119.99972 * 353.75779 * 12 11 10 15 15 C 1.46507 * 119.99604 * 179.72640 * 14 12 11 16 16 H 1.08995 * 112.84978 * 24.07591 * 15 14 12 17 17 C 1.53775 * 113.61107 * 155.27240 * 15 14 12 18 18 C 1.53781 * 87.08332 * 139.97892 * 17 15 14 19 19 H 1.08995 * 113.61851 * 89.11141 * 18 17 15 20 20 C 1.50700 * 113.61928 * 219.93745 * 18 17 15 21 21 N 1.30496 * 125.64753 * 265.02357 * 20 18 17 22 22 C 1.34130 * 109.25646 * 179.97438 * 21 20 18 23 23 C 1.34667 * 108.02107 * 0.02562 * 22 21 20 24 24 N 1.35043 * 125.65289 * 84.70907 * 20 18 17 25 25 C 1.53780 * 113.60906 * 252.76871 * 15 14 12 26 26 H 1.08997 * 109.47096 * 263.62894 * 1 2 3 27 27 H 1.09003 * 109.46546 * 23.62313 * 1 2 3 28 28 H 1.08997 * 109.47224 * 143.62302 * 1 2 3 29 29 H 1.07998 * 119.93104 * 0.02562 * 3 2 1 30 30 H 1.09002 * 109.46898 * 270.02653 * 5 4 3 31 31 H 1.09003 * 109.46859 * 30.01658 * 5 4 3 32 32 H 1.09000 * 109.47680 * 150.01931 * 5 4 3 33 33 H 1.09004 * 109.47239 * 315.02472 * 7 6 4 34 34 H 0.96694 * 114.00232 * 299.99703 * 8 7 6 35 35 H 1.48503 * 110.00062 * 298.68086 * 9 7 6 36 36 H 1.48496 * 109.99954 * 60.00056 * 9 7 6 37 37 H 1.08000 * 120.07196 * 179.97438 * 10 6 4 38 38 H 0.96991 * 120.00266 * 359.97438 * 14 12 11 39 39 H 1.09000 * 113.61629 * 254.52711 * 17 15 14 40 40 H 1.09004 * 113.62070 * 25.43036 * 17 15 14 41 41 H 1.07997 * 125.98785 * 180.02562 * 22 21 20 42 42 H 1.07997 * 126.59345 * 180.02562 * 23 22 21 43 43 H 0.96998 * 126.39494 * 0.02562 * 24 20 18 44 44 H 1.09002 * 113.61530 * 334.56497 * 25 15 14 45 45 H 1.08994 * 113.61768 * 105.47231 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1936 0.0000 4 6 3.5821 1.1953 -0.0058 5 6 4.3307 2.5031 -0.0121 6 6 4.2813 0.0016 -0.0062 7 6 5.7883 0.0130 -0.0131 8 8 6.2678 0.3678 1.2855 9 14 6.4200 -1.6797 -0.4672 10 6 3.6020 -1.1994 -0.0014 11 6 2.2065 -1.2081 0.0045 12 6 1.4721 -2.4913 0.0091 13 8 0.2625 -2.4987 0.1286 14 7 2.1438 -3.6526 -0.1193 15 6 1.4166 -4.9244 -0.1087 16 1 0.3740 -4.8183 -0.4080 17 6 2.1536 -6.0614 -0.8358 18 6 1.6808 -6.9869 0.2976 19 1 0.7099 -7.4456 0.1105 20 6 2.7228 -7.9821 0.7390 21 7 2.8321 -9.2097 0.3099 22 6 3.8709 -9.8004 0.9190 23 6 4.4262 -8.9050 1.7577 24 7 3.7019 -7.7495 1.6395 25 6 1.6088 -5.7330 1.1852 26 1 -0.3633 -0.1140 1.0213 27 1 -0.3632 0.9416 -0.4118 28 1 -0.3633 -0.8274 -0.6095 29 1 1.6584 2.1289 0.0004 30 1 4.5065 2.8161 -1.0413 31 1 3.7411 3.2618 0.5026 32 1 5.2859 2.3776 0.4978 33 1 6.1428 0.7410 -0.7427 34 1 5.9773 1.2393 1.5875 35 1 5.9700 -2.6763 0.5376 36 1 5.9282 -2.0604 -1.8157 37 1 4.1490 -2.1306 -0.0021 38 1 3.1090 -3.6466 -0.2150 39 1 1.7260 -6.3077 -1.8077 40 1 3.2352 -5.9296 -0.8693 41 1 4.2037 -10.8160 0.7639 42 1 5.2818 -9.0659 2.3967 43 1 3.8606 -6.9195 2.1156 44 1 2.5414 -5.5114 1.7041 45 1 0.7414 -5.7142 1.8448 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14772358_9599494.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:35:35 Heat of formation + Delta-G solvation = 46.172026 kcal Electronic energy + Delta-G solvation = -27705.818117 eV Core-core repulsion = 23884.559994 eV Total energy + Delta-G solvation = -3821.258124 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.16459 -41.89403 -40.61517 -39.34385 -37.64985 -35.25800 -34.37917 -33.52747 -33.32854 -30.71781 -29.42289 -28.65235 -26.93987 -26.28753 -25.47435 -23.87770 -23.05843 -22.45692 -21.61885 -21.40506 -20.65123 -19.13159 -18.93024 -18.36180 -17.35510 -16.99466 -16.55993 -16.46070 -16.36757 -16.17192 -15.83614 -15.51935 -15.04017 -14.99007 -14.93796 -14.67212 -14.58493 -14.23489 -14.03226 -13.84308 -13.68776 -13.59346 -13.37468 -13.05640 -12.88652 -12.74212 -12.69649 -12.53814 -12.26805 -12.11950 -11.81247 -11.34541 -11.18032 -11.09468 -11.08187 -10.80615 -10.33502 -10.03915 -9.73799 -9.40397 -4.87144 -0.41365 0.02594 1.02946 1.29302 1.53346 1.62788 1.84486 1.86249 2.07326 2.15913 2.49201 3.17466 3.26469 3.35025 3.41240 3.45927 3.49976 3.65521 3.68212 3.78410 3.86649 4.02472 4.07152 4.17996 4.33623 4.39340 4.42686 4.44850 4.45870 4.51244 4.54113 4.58308 4.66885 4.68601 4.70568 4.75443 4.77943 4.85605 4.93940 4.97839 5.03372 5.10609 5.15774 5.31576 5.35150 5.38742 5.68568 5.74308 6.22420 6.40455 6.59085 6.93945 7.07746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.027 4.027 3 C -0.131 4.131 4 C -0.039 4.039 5 C -0.126 4.126 6 C -0.139 4.139 7 C -0.088 4.088 8 O -0.545 6.545 9 Si 0.792 3.208 10 C -0.087 4.087 11 C -0.162 4.162 12 C 0.557 3.443 13 O -0.553 6.553 14 N -0.710 5.710 15 C 0.125 3.875 16 H 0.116 0.884 17 C -0.124 4.124 18 C -0.019 4.019 19 H 0.125 0.875 20 C 0.210 3.790 21 N -0.529 5.529 22 C -0.061 4.061 23 C -0.042 4.042 24 N -0.558 5.558 25 C -0.141 4.141 26 H 0.071 0.929 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.154 0.846 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.098 0.902 34 H 0.374 0.626 35 H -0.280 1.280 36 H -0.266 1.266 37 H 0.126 0.874 38 H 0.404 0.596 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.180 0.820 42 H 0.211 0.789 43 H 0.429 0.571 44 H 0.092 0.908 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.645 5.556 0.730 8.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.028 4.028 3 C -0.148 4.148 4 C -0.039 4.039 5 C -0.182 4.182 6 C -0.140 4.140 7 C -0.196 4.196 8 O -0.354 6.354 9 Si 0.693 3.307 10 C -0.105 4.105 11 C -0.165 4.165 12 C 0.346 3.654 13 O -0.433 6.433 14 N -0.361 5.361 15 C 0.020 3.980 16 H 0.134 0.866 17 C -0.164 4.164 18 C -0.040 4.040 19 H 0.143 0.857 20 C -0.055 4.055 21 N -0.249 5.249 22 C -0.208 4.208 23 C -0.176 4.176 24 N -0.163 5.163 25 C -0.180 4.180 26 H 0.089 0.911 27 H 0.097 0.903 28 H 0.095 0.905 29 H 0.172 0.828 30 H 0.109 0.891 31 H 0.106 0.894 32 H 0.100 0.900 33 H 0.116 0.884 34 H 0.225 0.775 35 H -0.206 1.206 36 H -0.192 1.192 37 H 0.144 0.856 38 H 0.241 0.759 39 H 0.110 0.890 40 H 0.109 0.891 41 H 0.197 0.803 42 H 0.228 0.772 43 H 0.270 0.730 44 H 0.110 0.890 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 5.352 3.732 -0.030 6.525 hybrid contribution -0.405 1.324 1.020 1.719 sum 4.947 5.055 0.990 7.142 Atomic orbital electron populations 1.21026 0.89701 1.03472 1.03157 1.20283 0.97254 0.91836 0.93431 1.21292 0.93772 0.98082 1.01700 1.20351 0.93734 0.95877 0.93943 1.21076 1.00430 0.92397 1.04283 1.20328 0.97187 0.92823 1.03632 1.25401 0.90013 1.15180 0.89001 1.86767 1.75194 1.40977 1.32438 0.92367 0.90790 0.70944 0.76597 1.21182 0.92994 0.98139 0.98205 1.19738 0.93464 0.93402 1.09906 1.18466 0.86893 0.84345 0.75657 1.90736 1.14653 1.87487 1.50453 1.45886 1.10984 1.05364 1.73888 1.22510 0.98063 0.80569 0.96859 0.86606 1.23383 1.01307 0.92779 0.98901 1.20752 0.96072 0.89948 0.97217 0.85745 1.23078 0.94337 0.93903 0.94139 1.70181 1.21005 1.06207 1.27526 1.22772 0.96413 1.01832 0.99809 1.23313 1.02098 0.86232 1.05989 1.43282 1.24521 1.14272 1.34238 1.23537 1.03787 0.93352 0.97334 0.91073 0.90318 0.90462 0.82812 0.89077 0.89402 0.89950 0.88374 0.77521 1.20629 1.19216 0.85627 0.75898 0.89017 0.89057 0.80323 0.77249 0.73017 0.89001 0.89533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.55 8.73 71.24 0.62 0.07 16 2 C -0.03 -0.13 5.91 -19.61 -0.12 -0.24 16 3 C -0.13 -0.05 9.31 22.23 0.21 0.15 16 4 C -0.04 0.05 5.87 -19.81 -0.12 -0.07 16 5 C -0.13 0.97 9.27 71.24 0.66 1.63 16 6 C -0.14 -0.09 5.26 -19.90 -0.10 -0.19 16 7 C -0.09 0.26 1.96 71.24 0.14 0.40 16 8 O -0.55 1.00 12.64 -148.98 -1.88 -0.88 16 9 Si 0.79 -2.69 30.40 68.60 2.09 -0.60 16 10 C -0.09 -0.26 8.13 22.52 0.18 -0.08 16 11 C -0.16 -0.93 5.87 -20.09 -0.12 -1.05 16 12 C 0.56 3.95 7.70 86.79 0.67 4.62 16 13 O -0.55 -6.85 12.96 -3.89 -0.05 -6.90 16 14 N -0.71 -1.01 5.30 -442.90 -2.35 -3.36 16 15 C 0.12 -0.03 4.24 45.51 0.19 0.16 16 16 H 0.12 0.28 7.47 -2.39 -0.02 0.26 16 17 C -0.12 0.23 7.38 31.12 0.23 0.46 16 18 C -0.02 0.01 4.29 -11.01 -0.05 -0.04 16 19 H 0.12 0.00 8.14 -2.39 -0.02 -0.02 16 20 C 0.21 0.85 7.36 138.13 1.02 1.87 16 21 N -0.53 -5.28 11.25 -188.14 -2.12 -7.40 16 22 C -0.06 -0.34 11.87 83.52 0.99 0.65 16 23 C -0.04 0.01 12.04 83.09 1.00 1.01 16 24 N -0.56 0.47 5.94 -186.28 -1.11 -0.63 16 25 C -0.14 0.33 7.36 31.12 0.23 0.56 16 26 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 27 H 0.08 0.04 8.04 -2.39 -0.02 0.02 16 28 H 0.08 0.69 5.87 -2.39 -0.01 0.67 16 29 H 0.15 -0.64 8.06 -2.91 -0.02 -0.66 16 30 H 0.09 -0.81 8.14 -2.39 -0.02 -0.83 16 31 H 0.09 -0.82 8.08 -2.39 -0.02 -0.83 16 32 H 0.08 -0.84 4.96 -2.39 -0.01 -0.85 16 33 H 0.10 -0.69 7.37 -2.39 -0.02 -0.70 16 34 H 0.37 -2.66 6.84 -74.06 -0.51 -3.17 16 35 H -0.28 -0.19 6.81 99.48 0.68 0.48 16 36 H -0.27 0.05 7.11 99.48 0.71 0.75 16 37 H 0.13 0.09 3.32 -2.91 -0.01 0.08 16 38 H 0.40 -0.76 6.80 -92.72 -0.63 -1.39 16 39 H 0.09 -0.17 8.14 -2.39 -0.02 -0.19 16 40 H 0.09 -0.25 8.07 -2.39 -0.02 -0.27 16 41 H 0.18 0.35 8.06 -2.91 -0.02 0.33 16 42 H 0.21 -1.62 8.06 -2.91 -0.02 -1.64 16 43 H 0.43 -2.78 7.54 -92.71 -0.70 -3.48 16 44 H 0.09 -0.45 6.65 -2.39 -0.02 -0.47 16 45 H 0.09 -0.14 8.14 -2.39 -0.02 -0.16 16 Total: 0.00 -21.00 360.85 -0.55 -21.54 By element: Atomic # 1 Polarization: -10.91 SS G_CDS: -0.76 Total: -11.68 kcal Atomic # 6 Polarization: 4.27 SS G_CDS: 5.64 Total: 9.91 kcal Atomic # 7 Polarization: -5.82 SS G_CDS: -5.57 Total: -11.39 kcal Atomic # 8 Polarization: -5.85 SS G_CDS: -1.93 Total: -7.78 kcal Atomic # 14 Polarization: -2.69 SS G_CDS: 2.09 Total: -0.60 kcal Total: -21.00 -0.55 -21.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14772358_9599494.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.716 kcal (2) G-P(sol) polarization free energy of solvation -20.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds