Wall clock time and date at job start Sun Mar 7 2021 04:35:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42892 * 1 3 3 Si 1.86298 * 109.47605 * 2 1 4 4 C 1.50699 * 109.47249 * 239.99737 * 2 1 3 5 5 C 1.34241 * 126.49879 * 104.69377 * 4 2 1 6 6 N 1.36835 * 109.93573 * 179.83309 * 5 4 2 7 7 C 1.46505 * 125.05961 * 180.18047 * 6 5 4 8 8 C 1.50704 * 109.46959 * 265.29803 * 7 6 5 9 9 O 1.21277 * 120.00062 * 0.02562 * 8 7 6 10 10 N 1.34778 * 119.99442 * 180.02562 * 8 7 6 11 11 C 1.46503 * 119.99592 * 180.02562 * 10 8 7 12 12 H 1.08997 * 112.85094 * 25.33154 * 11 10 8 13 13 C 1.53782 * 113.61323 * 156.52848 * 11 10 8 14 14 C 1.53782 * 87.07907 * 139.98010 * 13 11 10 15 15 H 1.09006 * 113.61106 * 89.20338 * 14 13 11 16 16 C 1.50701 * 113.61311 * 220.01560 * 14 13 11 17 17 N 1.30497 * 125.65212 * 265.02680 * 16 14 13 18 18 C 1.34125 * 109.25504 * 180.02562 * 17 16 14 19 19 C 1.34671 * 108.02482 * 359.97438 * 18 17 16 20 20 N 1.35044 * 125.64418 * 84.72471 * 16 14 13 21 21 C 1.53784 * 113.61330 * 254.13498 * 11 10 8 22 22 C 1.37692 * 109.87742 * 0.44512 * 6 5 4 23 23 C 1.39083 * 133.51798 * 179.69204 * 22 6 5 24 24 C 1.37789 * 119.77827 * 180.02562 * 23 22 6 25 25 C 1.38779 * 120.66846 * 359.97438 * 24 23 22 26 26 C 1.36660 * 120.52810 * 0.02615 * 25 24 23 27 27 C 1.39591 * 119.76380 * 359.97438 * 26 25 24 28 28 H 0.96703 * 114.00176 * 60.00012 * 1 2 3 29 29 H 1.09004 * 109.47449 * 120.00278 * 2 1 3 30 30 H 1.48506 * 109.99834 * 298.68369 * 3 2 1 31 31 H 1.48502 * 110.00011 * 59.99633 * 3 2 1 32 32 H 1.07995 * 125.03119 * 359.97438 * 5 4 2 33 33 H 1.08992 * 109.47139 * 25.30382 * 7 6 5 34 34 H 1.09004 * 109.46728 * 145.30321 * 7 6 5 35 35 H 0.96996 * 120.00146 * 0.02562 * 10 8 7 36 36 H 1.09001 * 113.61581 * 254.53046 * 13 11 10 37 37 H 1.09002 * 113.61286 * 25.35360 * 13 11 10 38 38 H 1.07998 * 125.99022 * 180.02562 * 18 17 16 39 39 H 1.07994 * 126.59617 * 180.02562 * 19 18 17 40 40 H 0.96994 * 126.40401 * 359.97438 * 20 16 14 41 41 H 1.08994 * 113.61571 * 334.56853 * 21 11 10 42 42 H 1.09001 * 113.61202 * 105.47188 * 21 11 10 43 43 H 1.08006 * 120.10584 * 0.04982 * 23 22 6 44 44 H 1.08001 * 119.66252 * 180.02562 * 24 23 22 45 45 H 1.08005 * 119.73954 * 179.97438 * 25 24 23 46 46 H 1.08001 * 120.11948 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2304 5 6 2.4555 -0.1373 -2.3253 6 7 2.8029 -1.0991 -3.2345 7 6 3.4077 -0.8404 -4.5436 8 6 2.3280 -0.7840 -5.5934 9 8 1.1676 -0.9436 -5.2791 10 7 2.6521 -0.5562 -6.8817 11 6 1.6025 -0.5008 -7.9022 12 1 0.6312 -0.2192 -7.4956 13 6 2.0017 0.2989 -9.1537 14 6 1.2854 -0.7840 -9.9778 15 1 0.2271 -0.5801 -10.1407 16 6 2.0113 -1.1571 -11.2447 17 7 1.7819 -0.6571 -12.4281 18 6 2.6139 -1.2218 -13.3157 19 6 3.3887 -2.1049 -12.6573 20 7 3.0106 -2.0601 -11.3424 21 6 1.5551 -1.7446 -8.8053 22 6 2.4939 -2.3458 -2.7383 23 6 2.6281 -3.6362 -3.2395 24 6 2.2139 -4.7107 -2.4828 25 6 1.6636 -4.5193 -1.2232 26 6 1.5224 -3.2601 -0.7114 27 6 1.9353 -2.1572 -1.4608 28 1 -0.3934 0.4417 -0.7651 29 1 1.7923 -0.5139 0.8900 30 1 1.5879 2.4585 -1.2243 31 1 1.5615 2.4679 1.2085 32 1 2.5861 0.9254 -2.4665 33 1 3.9387 0.1110 -4.5168 34 1 4.1076 -1.6405 -4.7848 35 1 3.5802 -0.4289 -7.1331 36 1 1.5283 1.2788 -9.2151 37 1 3.0779 0.3373 -9.3223 38 1 2.6559 -1.0055 -14.3730 39 1 4.1626 -2.7257 -13.0838 40 1 3.3885 -2.5813 -10.6169 41 1 2.5089 -2.2670 -8.8794 42 1 0.7217 -2.4120 -8.5859 43 1 3.0559 -3.7955 -4.2183 44 1 2.3194 -5.7120 -2.8736 45 1 1.3436 -5.3723 -0.6432 46 1 1.0929 -3.1188 0.2694 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14772358_9818708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:35:38 Heat of formation + Delta-G solvation = 93.250989 kcal Electronic energy + Delta-G solvation = -30175.098550 eV Core-core repulsion = 26034.003732 eV Total energy + Delta-G solvation = -4141.094819 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 353.153 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -43.11792 -42.52958 -41.02717 -39.33687 -38.15047 -37.67749 -34.83003 -34.01018 -33.47590 -31.51111 -30.60849 -30.23400 -28.96979 -26.85918 -26.41133 -25.38899 -23.75786 -22.89651 -22.54865 -21.90018 -21.55285 -20.85773 -20.59819 -19.08220 -18.63611 -18.39442 -17.75376 -17.38282 -16.93446 -16.52829 -16.39528 -16.23318 -16.09593 -15.81822 -15.61382 -15.34074 -14.95776 -14.86415 -14.71246 -14.68865 -14.43140 -14.09763 -14.06178 -13.70644 -13.58025 -13.50871 -13.12470 -12.73830 -12.57050 -12.53212 -12.38788 -12.06376 -12.00402 -11.75794 -11.73785 -11.14425 -11.05005 -11.03671 -10.54658 -10.45546 -10.18238 -9.36705 -9.15437 -8.62833 -4.89354 0.14703 0.64319 1.07146 1.34984 1.42539 1.43522 1.61517 1.70760 2.00195 2.09201 2.13082 2.26533 2.95297 3.24498 3.35021 3.50699 3.55322 3.61598 3.69255 3.71334 3.77724 3.86098 3.94567 4.05387 4.17225 4.22533 4.23789 4.30838 4.47816 4.50133 4.53679 4.56182 4.59326 4.62676 4.72342 4.75180 4.79601 4.82891 4.90220 4.94242 5.04649 5.14322 5.15775 5.43768 5.51295 5.66993 5.74079 5.75717 5.77205 6.19011 6.24008 6.46578 6.47663 6.54354 7.12427 7.12674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.556 6.556 2 C -0.057 4.057 3 Si 0.787 3.213 4 C -0.216 4.216 5 C 0.075 3.925 6 N -0.465 5.465 7 C 0.087 3.913 8 C 0.492 3.508 9 O -0.572 6.572 10 N -0.700 5.700 11 C 0.128 3.872 12 H 0.098 0.902 13 C -0.118 4.118 14 C -0.026 4.026 15 H 0.113 0.887 16 C 0.213 3.787 17 N -0.535 5.535 18 C -0.065 4.065 19 C -0.041 4.041 20 N -0.555 5.555 21 C -0.138 4.138 22 C 0.092 3.908 23 C -0.132 4.132 24 C -0.108 4.108 25 C -0.155 4.155 26 C -0.089 4.089 27 C -0.116 4.116 28 H 0.381 0.619 29 H 0.109 0.891 30 H -0.273 1.273 31 H -0.305 1.305 32 H 0.197 0.803 33 H 0.165 0.835 34 H 0.147 0.853 35 H 0.422 0.578 36 H 0.084 0.916 37 H 0.103 0.897 38 H 0.176 0.824 39 H 0.211 0.789 40 H 0.432 0.568 41 H 0.102 0.898 42 H 0.074 0.926 43 H 0.135 0.865 44 H 0.145 0.855 45 H 0.135 0.865 46 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.931 -0.451 -3.076 11.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.364 6.364 2 C -0.164 4.164 3 Si 0.690 3.310 4 C -0.223 4.223 5 C -0.051 4.051 6 N -0.148 5.148 7 C -0.038 4.038 8 C 0.278 3.722 9 O -0.450 6.450 10 N -0.353 5.353 11 C 0.023 3.977 12 H 0.116 0.884 13 C -0.157 4.157 14 C -0.047 4.047 15 H 0.132 0.868 16 C -0.052 4.052 17 N -0.255 5.255 18 C -0.212 4.212 19 C -0.175 4.175 20 N -0.160 5.160 21 C -0.178 4.178 22 C -0.013 4.013 23 C -0.153 4.153 24 C -0.127 4.127 25 C -0.174 4.174 26 C -0.107 4.107 27 C -0.120 4.120 28 H 0.230 0.770 29 H 0.127 0.873 30 H -0.199 1.199 31 H -0.233 1.233 32 H 0.213 0.787 33 H 0.182 0.818 34 H 0.165 0.835 35 H 0.260 0.740 36 H 0.103 0.897 37 H 0.122 0.878 38 H 0.193 0.807 39 H 0.227 0.773 40 H 0.273 0.727 41 H 0.121 0.879 42 H 0.093 0.907 43 H 0.153 0.847 44 H 0.163 0.837 45 H 0.153 0.847 46 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 9.559 0.636 -2.845 9.993 hybrid contribution -0.568 -1.119 -0.374 1.309 sum 8.990 -0.483 -3.219 9.561 Atomic orbital electron populations 1.86554 1.19571 1.80575 1.49678 1.24717 0.82508 1.12056 0.97163 0.94197 0.89569 0.70464 0.76755 1.20704 1.11032 0.91902 0.98706 1.22011 0.99481 0.95089 0.88507 1.43430 1.53173 1.03716 1.14456 1.22031 0.93768 1.09349 0.78632 1.21533 0.90484 0.75723 0.84501 1.90812 1.22454 1.49958 1.81764 1.45756 1.11448 1.72218 1.05829 1.22284 0.92800 0.96416 0.86216 0.88365 1.23337 1.02129 0.98296 0.91907 1.20804 0.99609 0.98370 0.85920 0.86846 1.23078 0.92974 0.93430 0.95692 1.70178 1.26837 1.28153 1.00321 1.22746 0.97794 1.00010 1.00603 1.23286 1.05229 1.05476 0.83507 1.43221 1.29144 1.33446 1.10153 1.23551 1.03566 0.97177 0.93489 1.18393 1.01706 0.87044 0.94176 1.20243 1.04968 0.89008 1.01039 1.21129 0.98216 0.99085 0.94262 1.20914 1.02367 0.97001 0.97072 1.20448 0.98985 0.91753 0.99552 1.19342 1.03843 0.93771 0.95085 0.77028 0.87292 1.19903 1.23334 0.78665 0.81770 0.83508 0.73995 0.89715 0.87831 0.80681 0.77262 0.72705 0.87949 0.90727 0.84708 0.83706 0.84723 0.86465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -4.61 12.88 -148.98 -1.92 -6.53 16 2 C -0.06 -0.21 3.06 71.24 0.22 0.01 16 3 Si 0.79 -1.14 30.83 68.60 2.11 0.97 16 4 C -0.22 -1.07 5.57 -18.62 -0.10 -1.17 16 5 C 0.07 0.02 9.89 83.00 0.82 0.84 16 6 N -0.47 -0.04 2.27 -519.98 -1.18 -1.21 16 7 C 0.09 -0.82 6.48 85.63 0.55 -0.26 16 8 C 0.49 -1.66 7.90 87.66 0.69 -0.97 16 9 O -0.57 -5.13 16.04 -3.02 -0.05 -5.18 16 10 N -0.70 6.86 5.36 -440.03 -2.36 4.50 16 11 C 0.13 -0.78 4.21 45.52 0.19 -0.59 16 12 H 0.10 -0.04 7.50 -2.39 -0.02 -0.06 16 13 C -0.12 0.85 7.38 31.12 0.23 1.08 16 14 C -0.03 0.09 4.29 -10.95 -0.05 0.05 16 15 H 0.11 -0.16 8.14 -2.38 -0.02 -0.18 16 16 C 0.21 0.20 7.36 138.13 1.02 1.22 16 17 N -0.53 -4.25 11.25 -188.13 -2.12 -6.37 16 18 C -0.06 -0.23 11.87 83.52 0.99 0.76 16 19 C -0.04 0.12 12.04 83.09 1.00 1.12 16 20 N -0.55 2.61 5.94 -186.27 -1.11 1.50 16 21 C -0.14 0.96 7.37 31.18 0.23 1.19 16 22 C 0.09 0.53 6.80 39.03 0.27 0.80 16 23 C -0.13 -0.47 10.00 22.37 0.22 -0.25 16 24 C -0.11 -0.40 10.01 22.29 0.22 -0.18 16 25 C -0.15 -0.91 9.97 22.03 0.22 -0.69 16 26 C -0.09 -0.79 10.05 22.23 0.22 -0.57 16 27 C -0.12 -1.04 6.35 -20.20 -0.13 -1.17 16 28 H 0.38 1.26 8.70 -74.06 -0.64 0.62 16 29 H 0.11 0.38 7.96 -2.38 -0.02 0.36 16 30 H -0.27 -0.13 6.99 99.48 0.70 0.56 16 31 H -0.31 -2.02 7.11 99.48 0.71 -1.31 16 32 H 0.20 -1.24 6.27 -2.91 -0.02 -1.26 16 33 H 0.16 -2.88 8.12 -2.39 -0.02 -2.90 16 34 H 0.15 -2.20 8.14 -2.38 -0.02 -2.22 16 35 H 0.42 -7.30 8.71 -92.71 -0.81 -8.11 16 36 H 0.08 -0.49 8.14 -2.39 -0.02 -0.51 16 37 H 0.10 -1.03 8.06 -2.39 -0.02 -1.05 16 38 H 0.18 0.11 8.06 -2.91 -0.02 0.09 16 39 H 0.21 -2.17 8.06 -2.91 -0.02 -2.19 16 40 H 0.43 -4.98 7.54 -92.71 -0.70 -5.68 16 41 H 0.10 -1.18 6.65 -2.39 -0.02 -1.19 16 42 H 0.07 -0.29 8.14 -2.39 -0.02 -0.31 16 43 H 0.14 -0.25 8.06 -2.91 -0.02 -0.27 16 44 H 0.15 -0.21 8.06 -2.91 -0.02 -0.23 16 45 H 0.13 0.27 8.06 -2.91 -0.02 0.25 16 46 H 0.12 0.96 8.06 -2.91 -0.02 0.94 16 Total: 0.00 -34.90 389.71 -0.87 -35.77 By element: Atomic # 1 Polarization: -23.59 SS G_CDS: -1.08 Total: -24.66 kcal Atomic # 6 Polarization: -5.61 SS G_CDS: 6.82 Total: 1.21 kcal Atomic # 7 Polarization: 5.18 SS G_CDS: -6.76 Total: -1.58 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: -1.97 Total: -11.71 kcal Atomic # 14 Polarization: -1.14 SS G_CDS: 2.11 Total: 0.97 kcal Total: -34.90 -0.87 -35.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14772358_9818708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.024 kcal (2) G-P(sol) polarization free energy of solvation -34.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds