Wall clock time and date at job start Sun Mar 7 2021 05:14:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.37656 * 125.67712 * 2 1 4 4 C 1.46686 * 126.23235 * 0.02562 * 3 2 1 5 5 O 1.21698 * 119.99862 * 355.50569 * 4 3 2 6 6 N 1.34777 * 119.99687 * 175.50638 * 4 3 2 7 7 C 1.46497 * 119.99429 * 185.93600 * 6 4 3 8 8 H 1.08997 * 109.47308 * 324.99208 * 7 6 4 9 9 C 1.53004 * 109.47518 * 84.99982 * 7 6 4 10 10 C 1.52997 * 109.46818 * 59.99493 * 9 7 6 11 11 C 1.52999 * 109.47130 * 60.00550 * 10 9 7 12 12 H 1.09001 * 109.47440 * 59.99332 * 11 10 9 13 13 S 1.81407 * 109.47065 * 179.97438 * 11 10 9 14 14 C 1.81397 * 101.91819 * 304.99630 * 13 11 10 15 15 O 1.42095 * 108.57895 * 59.48642 * 13 11 10 16 16 O 1.42103 * 108.57537 * 190.51270 * 13 11 10 17 17 C 1.53003 * 109.47165 * 299.99293 * 11 10 9 18 18 C 1.53004 * 109.46829 * 205.00085 * 7 6 4 19 19 C 1.37867 * 107.53422 * 180.24579 * 3 2 1 20 20 C 1.39834 * 107.08453 * 359.77423 * 19 3 2 21 21 C 1.35450 * 107.86562 * 0.02562 * 20 19 3 22 22 C 1.50698 * 125.56562 * 179.97438 * 21 20 19 23 23 O 1.42896 * 109.47506 * 210.02137 * 22 21 20 24 24 Si 1.86302 * 109.47219 * 330.02235 * 22 21 20 25 25 H 1.09002 * 109.46783 * 264.39088 * 1 2 3 26 26 H 1.09000 * 109.47520 * 24.38933 * 1 2 3 27 27 H 1.08993 * 109.47248 * 144.39497 * 1 2 3 28 28 H 0.96997 * 120.00480 * 5.93288 * 6 4 3 29 29 H 1.09001 * 109.47019 * 179.97438 * 9 7 6 30 30 H 1.08997 * 109.46595 * 299.99912 * 9 7 6 31 31 H 1.09001 * 109.47504 * 299.99921 * 10 9 7 32 32 H 1.09003 * 109.47112 * 180.02562 * 10 9 7 33 33 H 1.08996 * 109.47159 * 60.00662 * 14 13 11 34 34 H 1.09006 * 109.46571 * 180.02562 * 14 13 11 35 35 H 1.09000 * 109.47552 * 299.99872 * 14 13 11 36 36 H 1.08991 * 109.47066 * 300.00396 * 17 11 10 37 37 H 1.09001 * 109.47407 * 179.97438 * 17 11 10 38 38 H 1.08993 * 109.47583 * 59.99751 * 18 7 6 39 39 H 1.09003 * 109.47038 * 180.02562 * 18 7 6 40 40 H 1.08001 * 126.45775 * 179.75785 * 19 3 2 41 41 H 1.08006 * 126.06740 * 179.97438 * 20 19 3 42 42 H 1.09006 * 109.47009 * 90.01798 * 22 21 20 43 43 H 0.96702 * 113.99862 * 59.99388 * 23 22 21 44 44 H 1.48499 * 110.00113 * 58.67394 * 24 22 21 45 45 H 1.48494 * 110.00297 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2678 1.1182 0.0000 4 6 1.8124 2.5125 0.0005 5 8 0.6246 2.7647 -0.0816 6 7 2.7093 3.5144 0.0919 7 6 2.2497 4.8991 0.2235 8 1 1.3346 5.0346 -0.3530 9 6 1.9747 5.2075 1.6967 10 6 3.2592 5.0173 2.5059 11 6 4.3386 5.9652 1.9793 12 1 3.9967 6.9955 2.0772 13 16 5.8614 5.7402 2.9392 14 6 5.2765 6.0015 4.6363 15 8 6.2835 4.3897 2.8087 16 8 6.7651 6.7850 2.6060 17 6 4.6137 5.6568 0.5062 18 6 3.3291 5.8470 -0.3031 19 6 3.5780 0.6889 -0.0056 20 6 3.5521 -0.7092 -0.0038 21 6 2.2555 -1.1009 0.0022 22 6 1.7709 -2.5278 0.0055 23 8 0.5103 -2.6043 -0.6629 24 14 3.0080 -3.6058 -0.8767 25 1 -0.3633 -0.1004 1.0228 26 1 -0.3634 0.9359 -0.4243 27 1 -0.3633 -0.8355 -0.5983 28 1 3.6590 3.3186 0.0706 29 1 1.6331 6.2380 1.7946 30 1 1.2057 4.5323 2.0718 31 1 3.6011 3.9870 2.4080 32 1 3.0632 5.2366 3.5555 33 1 4.5088 5.2650 4.8735 34 1 6.1111 5.8928 5.3290 35 1 4.8584 7.0041 4.7263 36 1 4.9556 4.6266 0.4083 37 1 5.3824 6.3324 0.1309 38 1 3.5251 5.6274 -1.3525 39 1 2.9874 6.8773 -0.2048 40 1 4.4583 1.3145 -0.0108 41 1 4.4133 -1.3611 -0.0074 42 1 1.6583 -2.8709 1.0341 43 1 0.5357 -2.3137 -1.5849 44 1 4.3316 -3.5102 -0.2101 45 1 2.5421 -5.0158 -0.8798 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14783808_10803936.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:14:01 Heat of formation + Delta-G solvation = -81.821170 kcal Electronic energy + Delta-G solvation = -29245.432245 eV Core-core repulsion = 25164.978495 eV Total energy + Delta-G solvation = -4080.453749 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 343.133 amu Computer time = 2.47 seconds Orbital eigenvalues (eV) -42.58449 -41.04698 -39.04725 -38.02236 -37.83841 -37.06704 -35.15509 -33.70304 -32.41394 -32.04318 -30.74129 -30.30254 -27.46267 -26.77975 -24.34039 -24.06651 -23.31806 -21.73566 -20.56370 -20.43446 -19.85487 -18.91975 -18.23492 -18.12432 -17.27635 -17.10229 -16.91485 -16.74694 -16.39037 -16.28093 -15.77987 -15.55018 -15.26671 -15.04796 -14.89957 -14.82565 -14.47261 -14.38355 -14.29992 -14.17531 -13.95480 -13.74153 -13.60644 -13.47216 -13.13088 -13.11540 -13.02696 -12.98941 -12.69480 -12.48301 -12.18728 -12.11001 -12.02448 -11.99885 -11.67194 -11.06405 -11.02820 -10.66153 -10.16312 -9.70203 -9.06639 -5.03963 -1.11774 0.43236 1.11722 1.49893 1.61042 1.69305 1.72735 1.98692 2.37739 2.41793 2.51902 2.83682 3.15868 3.16930 3.25066 3.54200 3.54475 3.66339 3.72034 3.76208 3.83292 3.92747 3.95716 4.03313 4.13377 4.18865 4.27138 4.33455 4.38221 4.43933 4.46458 4.54559 4.56161 4.67510 4.78991 4.80123 4.82324 4.85308 4.93789 4.99812 5.03778 5.18132 5.41845 5.72238 6.00922 6.16850 6.31822 6.45839 7.17808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.051 3.949 2 N -0.389 5.389 3 C -0.055 4.055 4 C 0.594 3.406 5 O -0.547 6.547 6 N -0.715 5.715 7 C 0.146 3.854 8 H 0.098 0.902 9 C -0.123 4.123 10 C -0.112 4.112 11 C -0.571 4.571 12 H 0.142 0.858 13 S 2.417 3.583 14 C -0.658 4.658 15 O -0.934 6.934 16 O -0.938 6.938 17 C -0.109 4.109 18 C -0.119 4.119 19 C -0.133 4.133 20 C -0.204 4.204 21 C 0.015 3.985 22 C -0.049 4.049 23 O -0.542 6.542 24 Si 0.723 3.277 25 H 0.071 0.929 26 H 0.104 0.896 27 H 0.103 0.897 28 H 0.403 0.597 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.130 0.870 34 H 0.131 0.869 35 H 0.129 0.871 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.081 0.919 39 H 0.087 0.913 40 H 0.146 0.854 41 H 0.147 0.853 42 H 0.119 0.881 43 H 0.381 0.619 44 H -0.251 1.251 45 H -0.253 1.253 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.946 1.434 -1.086 2.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 N -0.062 5.062 3 C -0.169 4.169 4 C 0.382 3.618 5 O -0.426 6.426 6 N -0.368 5.368 7 C 0.041 3.959 8 H 0.116 0.884 9 C -0.163 4.163 10 C -0.150 4.150 11 C -0.680 4.680 12 H 0.160 0.840 13 S 2.600 3.400 14 C -0.808 4.808 15 O -0.931 6.931 16 O -0.935 6.935 17 C -0.147 4.147 18 C -0.158 4.158 19 C -0.160 4.160 20 C -0.228 4.228 21 C -0.104 4.104 22 C -0.159 4.159 23 O -0.348 6.348 24 Si 0.622 3.378 25 H 0.089 0.911 26 H 0.123 0.877 27 H 0.121 0.879 28 H 0.240 0.760 29 H 0.098 0.902 30 H 0.094 0.906 31 H 0.103 0.897 32 H 0.098 0.902 33 H 0.149 0.851 34 H 0.149 0.851 35 H 0.148 0.852 36 H 0.098 0.902 37 H 0.106 0.894 38 H 0.100 0.900 39 H 0.106 0.894 40 H 0.164 0.836 41 H 0.165 0.835 42 H 0.136 0.864 43 H 0.229 0.771 44 H -0.175 1.175 45 H -0.178 1.178 Dipole moment (debyes) X Y Z Total from point charges -0.979 0.568 -0.752 1.359 hybrid contribution -0.572 0.572 1.122 1.384 sum -1.552 1.140 0.370 1.960 Atomic orbital electron populations 1.22642 0.75535 1.06486 1.04301 1.43749 1.06960 1.03930 1.51516 1.20029 0.90513 0.87516 1.18854 1.16975 0.85548 0.83550 0.75703 1.90781 1.16259 1.84769 1.50765 1.45779 1.09923 1.06083 1.75063 1.20989 0.98515 0.79890 0.96458 0.88436 1.21866 0.96786 1.02925 0.94691 1.21486 0.94566 0.99031 0.99903 1.30253 1.18738 1.09530 1.09463 0.84012 1.08088 0.77682 0.75609 0.78666 1.30305 1.13788 1.11980 1.24695 1.93605 1.79350 1.34904 1.85233 1.93620 1.59224 1.58270 1.82419 1.21368 0.99681 1.03297 0.90359 1.21772 0.93773 1.00324 0.99894 1.21318 0.94445 0.95240 1.04960 1.20651 0.95067 0.95449 1.11586 1.21069 0.90950 0.89211 1.09139 1.24979 0.93823 0.94647 1.02487 1.86487 1.30103 1.88849 1.29337 0.94011 0.76447 0.77618 0.89702 0.91064 0.87748 0.87863 0.76016 0.90169 0.90585 0.89679 0.90244 0.85107 0.85081 0.85205 0.90248 0.89415 0.90005 0.89431 0.83588 0.83521 0.86366 0.77103 1.17546 1.17772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.05 10.31 59.85 0.62 0.66 16 2 N -0.39 -0.70 3.16 -115.62 -0.37 -1.07 16 3 C -0.06 -0.11 6.89 -81.98 -0.56 -0.68 16 4 C 0.59 1.24 7.74 -12.85 -0.10 1.14 16 5 O -0.55 -2.60 14.17 5.19 0.07 -2.53 16 6 N -0.72 0.65 4.22 -55.11 -0.23 0.41 16 7 C 0.15 -0.27 2.83 -67.93 -0.19 -0.46 16 8 H 0.10 -0.04 7.50 -51.93 -0.39 -0.43 16 9 C -0.12 0.31 5.60 -26.73 -0.15 0.16 16 10 C -0.11 0.39 4.75 -26.73 -0.13 0.27 16 11 C -0.57 2.21 2.62 -26.73 -0.07 2.14 16 12 H 0.14 -0.86 8.14 -51.92 -0.42 -1.28 16 13 S 2.42 -3.82 4.90 -107.50 -0.53 -4.35 16 14 C -0.66 2.74 10.01 101.05 1.01 3.75 16 15 O -0.93 -1.78 18.06 -57.83 -1.04 -2.83 16 16 O -0.94 -2.33 18.10 -57.83 -1.05 -3.38 16 17 C -0.11 0.36 5.03 -26.73 -0.13 0.22 16 18 C -0.12 0.43 5.61 -26.73 -0.15 0.28 16 19 C -0.13 -0.10 10.36 -39.12 -0.41 -0.51 16 20 C -0.20 -0.15 9.37 -39.98 -0.37 -0.53 16 21 C 0.01 0.01 6.15 -81.96 -0.50 -0.49 16 22 C -0.05 0.03 2.99 36.00 0.11 0.14 16 23 O -0.54 0.50 10.11 -35.23 -0.36 0.14 16 24 Si 0.72 -1.28 31.29 -169.99 -5.32 -6.60 16 25 H 0.07 0.09 8.14 -51.93 -0.42 -0.34 16 26 H 0.10 0.22 5.94 -51.93 -0.31 -0.09 16 27 H 0.10 -0.08 5.23 -51.93 -0.27 -0.35 16 28 H 0.40 -0.97 5.77 -40.82 -0.24 -1.21 16 29 H 0.08 -0.30 8.14 -51.93 -0.42 -0.72 16 30 H 0.08 -0.05 8.14 -51.93 -0.42 -0.47 16 31 H 0.08 -0.22 7.60 -51.93 -0.39 -0.62 16 32 H 0.08 -0.43 6.39 -51.93 -0.33 -0.76 16 33 H 0.13 -0.73 6.77 -51.93 -0.35 -1.08 16 34 H 0.13 -0.53 8.14 -51.92 -0.42 -0.95 16 35 H 0.13 -0.77 8.14 -51.92 -0.42 -1.19 16 36 H 0.08 -0.27 6.50 -51.93 -0.34 -0.61 16 37 H 0.09 -0.31 8.14 -51.93 -0.42 -0.73 16 38 H 0.08 -0.30 8.14 -51.93 -0.42 -0.73 16 39 H 0.09 -0.39 8.14 -51.93 -0.42 -0.81 16 40 H 0.15 -0.22 7.45 -52.49 -0.39 -0.61 16 41 H 0.15 -0.07 6.62 -52.48 -0.35 -0.42 16 42 H 0.12 -0.03 7.96 -51.93 -0.41 -0.44 16 43 H 0.38 -1.64 8.30 45.56 0.38 -1.26 16 44 H -0.25 -0.08 6.76 56.52 0.38 0.30 16 45 H -0.25 -0.30 7.11 56.52 0.40 0.11 16 LS Contribution 363.44 15.07 5.48 5.48 Total: 0.00 -12.54 363.44 -10.79 -23.33 By element: Atomic # 1 Polarization: -8.28 SS G_CDS: -6.42 Total: -14.69 kcal Atomic # 6 Polarization: 7.12 SS G_CDS: -1.03 Total: 6.09 kcal Atomic # 7 Polarization: -0.06 SS G_CDS: -0.60 Total: -0.66 kcal Atomic # 8 Polarization: -6.22 SS G_CDS: -2.37 Total: -8.59 kcal Atomic # 14 Polarization: -1.28 SS G_CDS: -5.32 Total: -6.60 kcal Atomic # 16 Polarization: -3.82 SS G_CDS: -0.53 Total: -4.35 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -12.54 -10.79 -23.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14783808_10803936.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.495 kcal (2) G-P(sol) polarization free energy of solvation -12.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.47 seconds