Wall clock time and date at job start Sun Mar 7 2021 05:18:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 O 1.42099 * 108.58023 * 2 1 4 4 O 1.42101 * 108.57733 * 228.97089 * 2 1 3 5 5 C 1.81406 * 101.92018 * 114.48810 * 2 1 3 6 6 H 1.08994 * 109.47252 * 64.99898 * 5 2 1 7 7 C 1.53000 * 109.46711 * 184.99720 * 5 2 1 8 8 C 1.53004 * 109.46992 * 179.97438 * 7 5 2 9 9 C 1.53003 * 109.47249 * 300.00221 * 8 7 5 10 10 H 1.09001 * 109.47125 * 179.97438 * 9 8 7 11 11 N 1.46494 * 109.46769 * 300.00062 * 9 8 7 12 12 C 1.34781 * 119.99604 * 204.99650 * 11 9 8 13 13 O 1.21284 * 120.00293 * 0.02562 * 12 11 9 14 14 C 1.50709 * 119.99702 * 179.97438 * 12 11 9 15 15 C 1.53041 * 109.32206 * 144.54327 * 14 12 11 16 16 C 1.53546 * 108.55972 * 169.83270 * 15 14 12 17 17 N 1.47028 * 107.65610 * 299.05066 * 16 15 14 18 18 C 1.38927 * 118.88388 * 43.66516 * 17 16 15 19 19 C 1.31110 * 121.84792 * 346.67855 * 18 17 16 20 20 C 1.50705 * 118.54534 * 180.42925 * 19 18 17 21 21 O 1.42894 * 109.47067 * 100.73423 * 20 19 18 22 22 Si 1.86297 * 109.47084 * 340.73305 * 20 19 18 23 23 C 1.53006 * 109.46954 * 59.99445 * 9 8 7 24 24 C 1.52995 * 109.46857 * 304.99487 * 5 2 1 25 25 H 1.09003 * 109.46982 * 305.51223 * 1 2 3 26 26 H 1.09001 * 109.47266 * 65.51241 * 1 2 3 27 27 H 1.09002 * 109.47474 * 185.51303 * 1 2 3 28 28 H 1.08997 * 109.47599 * 60.00244 * 7 5 2 29 29 H 1.08996 * 109.47394 * 299.99721 * 7 5 2 30 30 H 1.09007 * 109.46766 * 59.99856 * 8 7 5 31 31 H 1.08997 * 109.47361 * 180.02562 * 8 7 5 32 32 H 0.96996 * 120.00541 * 24.99841 * 11 9 8 33 33 H 1.08994 * 109.32629 * 24.89529 * 14 12 11 34 34 H 1.09000 * 109.62584 * 289.55417 * 15 14 12 35 35 H 1.08998 * 109.62556 * 50.11069 * 15 14 12 36 36 H 1.09001 * 109.81972 * 58.58941 * 16 15 14 37 37 H 1.09000 * 109.82506 * 179.51169 * 16 15 14 38 38 H 0.97000 * 120.55697 * 223.64030 * 17 16 15 39 39 H 1.08001 * 119.07625 * 166.68560 * 18 17 16 40 40 H 1.09002 * 109.46747 * 220.73402 * 20 19 18 41 41 H 0.96696 * 114.00288 * 300.00157 * 21 20 19 42 42 H 1.48502 * 109.99974 * 179.97438 * 22 20 19 43 43 H 1.48501 * 110.00315 * 301.32008 * 22 20 19 44 44 H 1.09004 * 109.46746 * 60.00410 * 23 9 8 45 45 H 1.08994 * 109.47135 * 179.97438 * 23 9 8 46 46 H 1.09000 * 109.47395 * 60.00465 * 24 5 2 47 47 H 1.08994 * 109.47525 * 300.00243 * 24 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2667 -0.8842 -1.0161 5 6 2.1887 -0.7357 1.6153 6 1 1.8388 -1.7678 1.6344 7 6 3.7001 -0.7051 1.8513 8 6 4.0161 -1.3251 3.2139 9 6 3.3120 -0.5269 4.3131 10 1 3.5368 -0.9688 5.2838 11 7 3.7824 0.8602 4.2867 12 6 3.7231 1.6132 5.4030 13 8 3.2807 1.1423 6.4294 14 6 4.2075 3.0401 5.3760 15 6 3.3240 3.8921 6.2901 16 6 3.9766 5.2725 6.4524 17 7 5.2952 5.0724 7.0712 18 6 6.1019 4.0387 6.6124 19 6 5.6358 3.0890 5.8379 20 6 6.5748 1.9980 5.3915 21 8 6.3639 0.8318 6.1900 22 14 8.3353 2.5750 5.5879 23 6 1.8006 -0.5574 4.0769 24 6 1.4846 0.0620 2.7146 25 1 -0.3633 0.5970 0.8365 26 1 -0.3634 0.4260 -0.9352 27 1 -0.3634 -1.0229 0.0987 28 1 4.0501 0.3269 1.8322 29 1 4.2017 -1.2734 1.0681 30 1 3.6661 -2.3572 3.2334 31 1 5.0928 -1.3029 3.3823 32 1 4.1365 1.2368 3.4660 33 1 4.1470 3.4224 4.3571 34 1 2.3361 4.0045 5.8434 35 1 3.2354 3.4123 7.2648 36 1 4.0940 5.7429 5.4761 37 1 3.3585 5.9005 7.0941 38 1 5.5969 5.6527 7.7876 39 1 7.1422 4.0166 6.9019 40 1 6.3848 1.7609 4.3447 41 1 6.5152 0.9695 7.1350 42 1 9.2712 1.5077 5.1517 43 1 8.5588 3.8056 4.7874 44 1 1.4506 -1.5896 4.0965 45 1 1.2989 0.0108 4.8601 46 1 0.4079 0.0403 2.5465 47 1 1.8345 1.0941 2.6955 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14783808_15608500.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:18:15 Heat of formation + Delta-G solvation = -115.742255 kcal Electronic energy + Delta-G solvation = -30686.007750 eV Core-core repulsion = 26576.771594 eV Total energy + Delta-G solvation = -4109.236157 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 3.65 seconds Orbital eigenvalues (eV) -41.52628 -40.14406 -38.56178 -37.99808 -37.40825 -37.05032 -34.75105 -33.50356 -32.71919 -32.30610 -31.09811 -30.32183 -27.19275 -25.98894 -24.13618 -23.95215 -23.20670 -22.05585 -20.34383 -19.83220 -19.25823 -19.03650 -18.18222 -17.98949 -17.26826 -17.22290 -17.06894 -16.60950 -16.38977 -16.16250 -15.66119 -15.52984 -15.26770 -14.94969 -14.87839 -14.66555 -14.35820 -14.29717 -14.15964 -14.07757 -13.92275 -13.68030 -13.53579 -13.38238 -13.20312 -13.10474 -13.01311 -12.72089 -12.54622 -12.38148 -12.12567 -12.07770 -11.96732 -11.93040 -11.74837 -11.55431 -11.41485 -10.96740 -10.45963 -10.15051 -9.85005 -8.50368 -5.01619 -1.09546 1.25913 1.39007 1.63362 1.67332 2.00304 2.05029 2.37859 2.53185 2.54557 2.86762 3.23644 3.30677 3.61366 3.65130 3.71659 3.74608 3.76417 3.79548 3.91423 3.95956 4.00386 4.06022 4.16501 4.23648 4.28389 4.31464 4.35015 4.40978 4.51691 4.55994 4.58008 4.59273 4.69851 4.73345 4.75124 4.89145 4.94877 4.98572 5.08419 5.15317 5.17546 5.28222 5.42303 5.69669 6.24631 6.70487 6.75676 6.80119 7.52662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.658 4.658 2 S 2.415 3.585 3 O -0.936 6.936 4 O -0.939 6.939 5 C -0.569 4.569 6 H 0.141 0.859 7 C -0.107 4.107 8 C -0.118 4.118 9 C 0.149 3.851 10 H 0.095 0.905 11 N -0.724 5.724 12 C 0.540 3.460 13 O -0.535 6.535 14 C -0.040 4.040 15 C -0.125 4.125 16 C 0.121 3.879 17 N -0.749 5.749 18 C 0.158 3.842 19 C -0.276 4.276 20 C -0.046 4.046 21 O -0.538 6.538 22 Si 0.668 3.332 23 C -0.123 4.123 24 C -0.110 4.110 25 H 0.131 0.869 26 H 0.130 0.870 27 H 0.130 0.870 28 H 0.077 0.923 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.395 0.605 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.086 0.914 36 H 0.061 0.939 37 H 0.083 0.917 38 H 0.404 0.596 39 H 0.134 0.866 40 H 0.101 0.899 41 H 0.375 0.625 42 H -0.257 1.257 43 H -0.259 1.259 44 H 0.076 0.924 45 H 0.076 0.924 46 H 0.078 0.922 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.446 2.312 3.259 4.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.807 4.807 2 S 2.598 3.402 3 O -0.933 6.933 4 O -0.936 6.936 5 C -0.678 4.678 6 H 0.159 0.841 7 C -0.146 4.146 8 C -0.157 4.157 9 C 0.044 3.956 10 H 0.113 0.887 11 N -0.377 5.377 12 C 0.327 3.673 13 O -0.410 6.410 14 C -0.062 4.062 15 C -0.163 4.163 16 C -0.003 4.003 17 N -0.379 5.379 18 C 0.036 3.964 19 C -0.287 4.287 20 C -0.158 4.158 21 O -0.343 6.343 22 Si 0.570 3.430 23 C -0.163 4.163 24 C -0.148 4.148 25 H 0.149 0.851 26 H 0.149 0.851 27 H 0.148 0.852 28 H 0.096 0.904 29 H 0.103 0.897 30 H 0.101 0.899 31 H 0.099 0.901 32 H 0.230 0.770 33 H 0.100 0.900 34 H 0.094 0.906 35 H 0.105 0.895 36 H 0.079 0.921 37 H 0.101 0.899 38 H 0.238 0.762 39 H 0.151 0.849 40 H 0.118 0.882 41 H 0.222 0.778 42 H -0.183 1.183 43 H -0.184 1.184 44 H 0.094 0.906 45 H 0.095 0.905 46 H 0.096 0.904 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.697 2.195 2.245 3.216 hybrid contribution -0.813 -0.009 -0.123 0.822 sum -1.510 2.186 2.122 3.400 Atomic orbital electron populations 1.30299 1.26634 1.11774 1.12004 1.08127 0.78543 0.76008 0.77530 1.93595 1.79019 1.34303 1.86419 1.93617 1.79122 1.67048 1.53830 1.30235 1.05461 1.12675 1.19441 0.84073 1.21357 0.90360 1.02943 0.99932 1.21752 1.01592 0.99836 0.92514 1.20854 0.92690 0.82017 1.00036 0.88699 1.46120 1.65482 1.13030 1.13034 1.20220 0.76745 0.87423 0.82933 1.90659 1.45769 1.73465 1.31153 1.19673 0.93244 0.92785 1.00467 1.21796 0.97818 0.95290 1.01430 1.21607 0.83792 0.96572 0.98368 1.44554 1.17557 1.34268 1.41486 1.20297 0.93784 0.88054 0.94273 1.20495 0.95179 1.00483 1.12585 1.24680 1.06736 0.87598 0.96787 1.86500 1.92865 1.32890 1.22049 0.95285 0.76411 0.79961 0.91311 1.21858 0.96593 1.01817 0.95999 1.21461 0.99628 0.99603 0.94084 0.85075 0.85113 0.85179 0.90434 0.89706 0.89862 0.90119 0.76986 0.89956 0.90620 0.89513 0.92097 0.89898 0.76188 0.84905 0.88186 0.77811 1.18253 1.18377 0.90579 0.90538 0.90397 0.89863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 51. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 2.48 10.01 101.05 1.01 3.49 16 2 S 2.41 -2.12 4.90 -107.50 -0.53 -2.65 16 3 O -0.94 -2.36 18.06 -57.83 -1.04 -3.41 16 4 O -0.94 -3.04 18.10 -57.83 -1.05 -4.08 16 5 C -0.57 1.66 2.62 -26.73 -0.07 1.59 16 6 H 0.14 -0.71 8.14 -51.93 -0.42 -1.13 16 7 C -0.11 0.21 5.03 -26.73 -0.13 0.07 16 8 C -0.12 0.21 5.61 -26.73 -0.15 0.06 16 9 C 0.15 -0.06 2.78 -67.93 -0.19 -0.25 16 10 H 0.10 0.17 7.58 -51.93 -0.39 -0.22 16 11 N -0.72 0.04 4.22 -53.80 -0.23 -0.19 16 12 C 0.54 1.04 4.99 -10.98 -0.05 0.99 16 13 O -0.53 -2.92 15.74 5.55 0.09 -2.83 16 14 C -0.04 -0.01 2.69 -93.14 -0.25 -0.26 16 15 C -0.12 0.03 5.30 -26.43 -0.14 -0.11 16 16 C 0.12 -0.25 7.16 -3.47 -0.02 -0.27 16 17 N -0.75 1.61 5.83 -60.68 -0.35 1.26 16 18 C 0.16 -0.23 9.61 -16.08 -0.15 -0.39 16 19 C -0.28 0.05 4.99 -101.34 -0.51 -0.46 16 20 C -0.05 0.00 2.18 36.01 0.08 0.08 16 21 O -0.54 -0.54 11.78 -35.23 -0.42 -0.96 16 22 Si 0.67 -0.57 29.86 -169.99 -5.08 -5.64 16 23 C -0.12 0.18 5.60 -26.75 -0.15 0.03 16 24 C -0.11 0.31 4.75 -26.76 -0.13 0.19 16 25 H 0.13 -0.70 6.77 -51.92 -0.35 -1.05 16 26 H 0.13 -0.49 8.14 -51.92 -0.42 -0.91 16 27 H 0.13 -0.71 8.14 -51.92 -0.42 -1.14 16 28 H 0.08 -0.16 6.50 -51.93 -0.34 -0.49 16 29 H 0.08 -0.17 8.14 -51.93 -0.42 -0.60 16 30 H 0.08 -0.22 8.14 -51.93 -0.42 -0.64 16 31 H 0.08 -0.10 8.14 -51.93 -0.42 -0.52 16 32 H 0.40 -0.52 6.84 -40.82 -0.28 -0.80 16 33 H 0.08 -0.06 8.10 -51.93 -0.42 -0.48 16 34 H 0.08 -0.07 8.14 -51.93 -0.42 -0.49 16 35 H 0.09 0.17 7.50 -51.93 -0.39 -0.22 16 36 H 0.06 -0.12 8.14 -51.93 -0.42 -0.55 16 37 H 0.08 -0.28 8.14 -51.93 -0.42 -0.71 16 38 H 0.40 -1.65 8.96 -40.82 -0.37 -2.01 16 39 H 0.13 -0.49 4.79 -52.49 -0.25 -0.75 16 40 H 0.10 0.03 7.96 -51.93 -0.41 -0.39 16 41 H 0.37 -0.59 8.70 45.56 0.40 -0.19 16 42 H -0.26 -0.71 7.11 56.52 0.40 -0.31 16 43 H -0.26 -0.44 7.11 56.52 0.40 -0.04 16 44 H 0.08 -0.19 8.14 -51.93 -0.42 -0.61 16 45 H 0.08 0.02 8.14 -51.93 -0.42 -0.40 16 46 H 0.08 -0.38 6.39 -51.93 -0.33 -0.72 16 47 H 0.08 -0.19 7.60 -51.93 -0.39 -0.58 16 LS Contribution 373.29 15.07 5.63 5.63 Total: 0.00 -12.84 373.29 -11.22 -24.05 By element: Atomic # 1 Polarization: -8.57 SS G_CDS: -7.38 Total: -15.95 kcal Atomic # 6 Polarization: 5.63 SS G_CDS: -0.86 Total: 4.77 kcal Atomic # 7 Polarization: 1.65 SS G_CDS: -0.58 Total: 1.07 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: -2.42 Total: -11.27 kcal Atomic # 14 Polarization: -0.57 SS G_CDS: -5.08 Total: -5.64 kcal Atomic # 16 Polarization: -2.12 SS G_CDS: -0.53 Total: -2.65 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -12.84 -11.22 -24.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14783808_15608500.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.689 kcal (2) G-P(sol) polarization free energy of solvation -12.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.65 seconds