Wall clock time and date at job start Sun Mar 7 2021 05:18:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81406 * 1 3 3 O 1.42095 * 108.57726 * 2 1 4 4 O 1.42100 * 108.57630 * 228.97150 * 2 1 3 5 5 C 1.81396 * 101.92296 * 114.48791 * 2 1 3 6 6 H 1.09002 * 109.47134 * 64.99695 * 5 2 1 7 7 C 1.52997 * 109.47360 * 184.99886 * 5 2 1 8 8 C 1.53000 * 109.47060 * 180.02562 * 7 5 2 9 9 C 1.53002 * 109.47233 * 299.99657 * 8 7 5 10 10 H 1.08993 * 109.47662 * 180.02562 * 9 8 7 11 11 N 1.46506 * 109.47042 * 300.00642 * 9 8 7 12 12 C 1.34775 * 119.99531 * 204.99548 * 11 9 8 13 13 O 1.21626 * 120.00594 * 0.02562 * 12 11 9 14 14 C 1.47266 * 119.99637 * 179.97438 * 12 11 9 15 15 C 1.36333 * 126.96679 * 179.71502 * 14 12 11 16 16 C 1.51007 * 126.79120 * 0.71909 * 15 14 12 17 17 C 1.53398 * 108.30711 * 163.85422 * 16 15 14 18 18 C 1.53157 * 109.04595 * 48.25696 * 17 16 15 19 19 C 1.53131 * 109.52658 * 290.42906 * 18 17 16 20 20 N 1.35219 * 108.66325 * 179.86237 * 15 14 12 21 21 C 1.36429 * 109.89243 * 0.41154 * 20 15 14 22 22 C 1.50700 * 125.49216 * 179.71493 * 21 20 15 23 23 O 1.42904 * 109.47151 * 330.01630 * 22 21 20 24 24 Si 1.86301 * 109.47180 * 210.01857 * 22 21 20 25 25 C 1.34491 * 109.01709 * 359.75084 * 21 20 15 26 26 C 1.52997 * 109.46817 * 60.00194 * 9 8 7 27 27 C 1.52999 * 109.47051 * 305.00228 * 5 2 1 28 28 H 1.09003 * 109.46636 * 305.51527 * 1 2 3 29 29 H 1.08996 * 109.46955 * 65.50803 * 1 2 3 30 30 H 1.09001 * 109.47148 * 185.51574 * 1 2 3 31 31 H 1.09002 * 109.47153 * 59.99820 * 7 5 2 32 32 H 1.09001 * 109.46832 * 300.00011 * 7 5 2 33 33 H 1.08992 * 109.47399 * 59.99823 * 8 7 5 34 34 H 1.09004 * 109.46724 * 180.02562 * 8 7 5 35 35 H 0.97000 * 120.00279 * 24.99489 * 11 9 8 36 36 H 1.08991 * 109.86476 * 44.03517 * 16 15 14 37 37 H 1.08999 * 109.51772 * 283.46921 * 16 15 14 38 38 H 1.08996 * 109.54315 * 288.38177 * 17 16 15 39 39 H 1.09002 * 109.60765 * 168.16664 * 17 16 15 40 40 H 1.08992 * 109.46510 * 170.40692 * 18 17 16 41 41 H 1.09002 * 109.45144 * 50.43034 * 18 17 16 42 42 H 1.09004 * 109.55761 * 291.14155 * 19 18 17 43 43 H 1.09002 * 109.65841 * 170.86521 * 19 18 17 44 44 H 1.08994 * 109.47096 * 90.01638 * 22 21 20 45 45 H 0.96695 * 114.00485 * 179.97438 * 23 22 21 46 46 H 1.48494 * 110.00019 * 59.99713 * 24 22 21 47 47 H 1.48504 * 109.99922 * 181.31835 * 24 22 21 48 48 H 1.07993 * 126.82272 * 180.02562 * 25 21 20 49 49 H 1.09002 * 109.47153 * 60.00231 * 26 9 8 50 50 H 1.09001 * 109.47289 * 180.02562 * 26 9 8 51 51 H 1.09000 * 109.47486 * 59.99641 * 27 5 2 52 52 H 1.09002 * 109.46716 * 299.99723 * 27 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2667 -0.8842 -1.0161 5 6 2.1888 -0.7357 1.6152 6 1 1.8389 -1.7678 1.6343 7 6 3.7002 -0.7051 1.8513 8 6 4.0162 -1.3262 3.2133 9 6 3.3121 -0.5290 4.3132 10 1 3.5376 -0.9711 5.2836 11 7 3.7823 0.8583 4.2880 12 6 3.7228 1.6103 5.4049 13 8 3.2793 1.1371 6.4338 14 6 4.1960 3.0046 5.3797 15 6 4.1969 3.8889 6.4174 16 6 3.7259 3.6282 7.8282 17 6 4.2760 4.7383 8.7328 18 6 4.0013 6.0965 8.0806 19 6 4.8763 6.2518 6.8335 20 7 4.7145 5.0614 5.9863 21 6 5.0487 4.9642 4.6671 22 6 5.6482 6.0667 3.8328 23 8 5.1999 7.3322 4.3227 24 14 5.1153 5.8633 2.0593 25 6 4.7562 3.7260 4.2310 26 6 1.8007 -0.5596 4.0771 27 6 1.4846 0.0620 2.7146 28 1 -0.3633 0.5970 0.8365 29 1 -0.3633 0.4260 -0.9352 30 1 -0.3633 -1.0229 0.0988 31 1 4.0501 0.3271 1.8321 32 1 4.2018 -1.2734 1.0680 33 1 3.6664 -2.3583 3.2321 34 1 5.0930 -1.3040 3.3817 35 1 4.1363 1.2356 3.4675 36 1 4.0938 2.6604 8.1687 37 1 2.6363 3.6377 7.8559 38 1 5.3503 4.6056 8.8604 39 1 3.7852 4.6947 9.7050 40 1 4.2328 6.8926 8.7881 41 1 2.9507 6.1570 7.7967 42 1 5.9206 6.3494 7.1303 43 1 4.5702 7.1389 6.2789 44 1 6.7353 6.0181 3.8934 45 1 5.5475 8.0894 3.8320 46 1 3.6349 5.9277 1.9632 47 1 5.7255 6.9260 1.2205 48 1 4.9046 3.3391 3.2337 49 1 1.4509 -1.5918 4.0958 50 1 1.2990 0.0087 4.8603 51 1 0.4079 0.0402 2.5464 52 1 1.8345 1.0941 2.6955 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14783808_16915396.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:18:20 Heat of formation + Delta-G solvation = -101.699288 kcal Electronic energy + Delta-G solvation = -35455.657985 eV Core-core repulsion = 30935.040877 eV Total energy + Delta-G solvation = -4520.617108 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 383.165 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -42.74514 -40.92050 -38.90644 -38.01598 -37.95128 -37.00248 -36.89951 -34.74547 -33.53791 -32.07257 -31.37435 -31.11123 -30.07878 -29.20077 -26.60182 -24.57297 -24.54733 -23.74143 -23.53881 -21.65854 -21.39352 -20.24636 -19.67143 -19.51287 -18.65746 -18.20208 -17.92452 -17.14364 -16.94073 -16.83507 -16.71662 -16.34633 -16.22723 -16.02662 -15.41858 -15.30938 -15.25949 -15.10683 -14.88236 -14.60639 -14.53848 -14.40985 -14.07865 -13.95477 -13.89435 -13.85982 -13.66331 -13.36372 -13.19138 -13.16404 -13.04899 -12.98961 -12.91532 -12.50272 -12.47376 -12.19356 -12.14911 -12.00551 -11.92114 -11.87823 -11.72670 -11.67474 -11.36806 -10.87966 -10.79979 -10.73025 -10.00151 -9.53367 -8.99933 -4.91452 -0.89819 0.75121 1.02336 1.48483 1.59106 1.83452 1.86765 2.02970 2.49061 2.58779 2.74621 3.08170 3.08615 3.48767 3.56021 3.57460 3.58406 3.74532 3.80096 3.82712 3.88094 4.00846 4.09201 4.14480 4.16421 4.27006 4.28675 4.30620 4.38767 4.41243 4.44718 4.48867 4.53086 4.61731 4.66069 4.77262 4.77600 4.80420 4.85091 4.91533 4.94017 5.00340 5.04576 5.06902 5.14531 5.15994 5.18612 5.19701 5.27881 5.31275 5.67899 5.76093 6.08143 6.23348 6.51430 6.71920 7.41821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.651 4.651 2 S 2.413 3.587 3 O -0.976 6.976 4 O -0.986 6.986 5 C -0.551 4.551 6 H 0.171 0.829 7 C -0.118 4.118 8 C -0.110 4.110 9 C 0.141 3.859 10 H 0.075 0.925 11 N -0.712 5.712 12 C 0.592 3.408 13 O -0.585 6.585 14 C -0.256 4.256 15 C 0.100 3.900 16 C -0.051 4.051 17 C -0.123 4.123 18 C -0.134 4.134 19 C 0.099 3.901 20 N -0.428 5.428 21 C 0.020 3.980 22 C -0.048 4.048 23 O -0.556 6.556 24 Si 0.775 3.225 25 C -0.170 4.170 26 C -0.120 4.120 27 C -0.115 4.115 28 H 0.148 0.852 29 H 0.131 0.869 30 H 0.154 0.846 31 H 0.079 0.921 32 H 0.092 0.908 33 H 0.100 0.900 34 H 0.082 0.918 35 H 0.408 0.592 36 H 0.085 0.915 37 H 0.078 0.922 38 H 0.069 0.931 39 H 0.091 0.909 40 H 0.108 0.892 41 H 0.065 0.935 42 H 0.088 0.912 43 H 0.108 0.892 44 H 0.103 0.897 45 H 0.400 0.600 46 H -0.309 1.309 47 H -0.274 1.274 48 H 0.178 0.822 49 H 0.095 0.905 50 H 0.053 0.947 51 H 0.103 0.897 52 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.758 0.107 0.475 0.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.802 4.802 2 S 2.602 3.398 3 O -0.974 6.974 4 O -0.983 6.983 5 C -0.663 4.663 6 H 0.189 0.811 7 C -0.157 4.157 8 C -0.149 4.149 9 C 0.037 3.963 10 H 0.094 0.906 11 N -0.364 5.364 12 C 0.382 3.618 13 O -0.468 6.468 14 C -0.266 4.266 15 C -0.019 4.019 16 C -0.089 4.089 17 C -0.161 4.161 18 C -0.171 4.171 19 C -0.021 4.021 20 N -0.104 5.104 21 C -0.089 4.089 22 C -0.157 4.157 23 O -0.367 6.367 24 Si 0.678 3.322 25 C -0.193 4.193 26 C -0.159 4.159 27 C -0.153 4.153 28 H 0.167 0.833 29 H 0.149 0.851 30 H 0.172 0.828 31 H 0.098 0.902 32 H 0.110 0.890 33 H 0.119 0.881 34 H 0.101 0.899 35 H 0.245 0.755 36 H 0.103 0.897 37 H 0.096 0.904 38 H 0.087 0.913 39 H 0.109 0.891 40 H 0.126 0.874 41 H 0.083 0.917 42 H 0.106 0.894 43 H 0.126 0.874 44 H 0.120 0.880 45 H 0.252 0.748 46 H -0.237 1.237 47 H -0.200 1.200 48 H 0.195 0.805 49 H 0.114 0.886 50 H 0.072 0.928 51 H 0.121 0.879 52 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.408 0.399 0.375 0.683 hybrid contribution -0.355 1.188 0.488 1.332 sum 0.052 1.587 0.863 1.807 Atomic orbital electron populations 1.30211 1.23262 1.13836 1.12931 1.07846 0.79637 0.74686 0.77674 1.93544 1.80538 1.36127 1.87148 1.93557 1.80803 1.67703 1.56215 1.30081 1.05258 1.13926 1.16986 0.81118 1.21486 0.90879 1.03381 0.99941 1.21723 1.01399 1.00200 0.91555 1.21029 0.94168 0.81167 0.99963 0.90643 1.45860 1.64778 1.13159 1.12622 1.17436 0.76686 0.84568 0.83078 1.90725 1.48976 1.74221 1.32830 1.20018 1.16444 0.94737 0.95406 1.20618 0.99128 0.85512 0.96637 1.20424 1.00829 1.00170 0.87490 1.21699 1.01891 0.93190 0.99296 1.21918 0.99838 0.99164 0.96204 1.22376 1.01825 0.86315 0.91542 1.44035 1.46640 1.10809 1.08899 1.19982 1.08092 0.96608 0.84207 1.24541 1.01848 0.82090 1.07239 1.86437 1.75279 1.15699 1.59272 0.93652 0.77992 0.88544 0.71989 1.21913 1.05629 0.92666 0.99106 1.21825 0.95422 1.02638 0.96048 1.21563 1.01366 0.99091 0.93303 0.83317 0.85079 0.82758 0.90214 0.88992 0.88149 0.89898 0.75457 0.89694 0.90371 0.91261 0.89089 0.87371 0.91669 0.89425 0.87414 0.87981 0.74835 1.23675 1.20026 0.80519 0.88636 0.92775 0.87912 0.90827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 5.88 10.01 113.37 1.14 7.01 16 2 S 2.41 -5.88 4.90 -56.49 -0.28 -6.16 16 3 O -0.98 -5.07 18.06 -127.37 -2.30 -7.37 16 4 O -0.99 -5.95 18.10 -127.37 -2.30 -8.25 16 5 C -0.55 4.27 2.62 30.59 0.08 4.35 16 6 H 0.17 -2.33 8.14 -2.39 -0.02 -2.35 16 7 C -0.12 0.72 5.03 30.59 0.15 0.88 16 8 C -0.11 0.70 5.61 30.60 0.17 0.87 16 9 C 0.14 -0.19 2.78 44.99 0.13 -0.06 16 10 H 0.08 0.20 7.57 -2.39 -0.02 0.19 16 11 N -0.71 -1.02 4.23 -445.95 -1.89 -2.90 16 12 C 0.59 5.06 7.77 86.62 0.67 5.74 16 13 O -0.59 -8.56 15.00 -4.11 -0.06 -8.63 16 14 C -0.26 -2.05 6.28 -19.12 -0.12 -2.17 16 15 C 0.10 0.79 6.57 41.69 0.27 1.06 16 16 C -0.05 -0.29 5.32 30.08 0.16 -0.13 16 17 C -0.12 0.00 5.98 30.78 0.18 0.18 16 18 C -0.13 0.19 5.92 30.69 0.18 0.37 16 19 C 0.10 0.07 6.22 86.33 0.54 0.60 16 20 N -0.43 -2.29 3.11 -493.61 -1.54 -3.82 16 21 C 0.02 0.08 6.18 40.99 0.25 0.33 16 22 C -0.05 0.07 2.99 71.24 0.21 0.28 16 23 O -0.56 0.74 9.97 -148.98 -1.48 -0.75 16 24 Si 0.77 -0.86 31.11 68.60 2.13 1.27 16 25 C -0.17 -0.59 9.08 23.64 0.21 -0.38 16 26 C -0.12 0.39 5.60 30.61 0.17 0.57 16 27 C -0.12 0.73 4.75 30.61 0.15 0.88 16 28 H 0.15 -1.84 6.77 -2.39 -0.02 -1.85 16 29 H 0.13 -1.10 8.14 -2.39 -0.02 -1.12 16 30 H 0.15 -2.12 8.14 -2.39 -0.02 -2.14 16 31 H 0.08 -0.47 6.51 -2.39 -0.02 -0.49 16 32 H 0.09 -0.63 8.14 -2.39 -0.02 -0.65 16 33 H 0.10 -0.92 8.14 -2.39 -0.02 -0.94 16 34 H 0.08 -0.54 8.14 -2.39 -0.02 -0.56 16 35 H 0.41 -0.91 5.99 -92.71 -0.56 -1.47 16 36 H 0.08 0.71 7.40 -2.39 -0.02 0.69 16 37 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 38 H 0.07 0.00 8.12 -2.39 -0.02 -0.02 16 39 H 0.09 -0.22 8.14 -2.39 -0.02 -0.24 16 40 H 0.11 -0.60 8.14 -2.39 -0.02 -0.62 16 41 H 0.06 0.04 8.11 -2.39 -0.02 0.02 16 42 H 0.09 -0.11 8.14 -2.38 -0.02 -0.13 16 43 H 0.11 0.11 5.93 -2.39 -0.01 0.09 16 44 H 0.10 -0.59 7.96 -2.39 -0.02 -0.61 16 45 H 0.40 -3.71 8.74 -74.06 -0.65 -4.36 16 46 H -0.31 -2.74 7.11 99.48 0.71 -2.04 16 47 H -0.27 -0.41 7.11 99.48 0.71 0.30 16 48 H 0.18 -0.56 6.52 -2.91 -0.02 -0.58 16 49 H 0.10 -0.68 8.14 -2.39 -0.02 -0.70 16 50 H 0.05 0.11 8.14 -2.39 -0.02 0.09 16 51 H 0.10 -1.17 6.39 -2.39 -0.02 -1.18 16 52 H 0.07 -0.25 7.61 -2.39 -0.02 -0.27 16 Total: 0.00 -33.25 408.75 -3.38 -36.63 By element: Atomic # 1 Polarization: -20.19 SS G_CDS: -0.21 Total: -20.41 kcal Atomic # 6 Polarization: 15.84 SS G_CDS: 4.55 Total: 20.39 kcal Atomic # 7 Polarization: -3.30 SS G_CDS: -3.42 Total: -6.73 kcal Atomic # 8 Polarization: -18.85 SS G_CDS: -6.15 Total: -25.00 kcal Atomic # 14 Polarization: -0.86 SS G_CDS: 2.13 Total: 1.27 kcal Atomic # 16 Polarization: -5.88 SS G_CDS: -0.28 Total: -6.16 kcal Total: -33.25 -3.38 -36.63 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14783808_16915396.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.071 kcal (2) G-P(sol) polarization free energy of solvation -33.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds