Wall clock time and date at job start Sun Mar 7 2021 03:47:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42894 * 109.47271 * 2 1 4 4 C 1.35903 * 116.99937 * 276.63949 * 3 2 1 5 5 C 1.38729 * 120.05552 * 357.81109 * 4 3 2 6 6 C 1.38146 * 119.94234 * 179.70416 * 5 4 3 7 7 C 1.38270 * 120.05786 * 0.59841 * 6 5 4 8 8 C 1.50688 * 119.94831 * 179.70315 * 7 6 5 9 9 O 1.42896 * 109.47274 * 244.98133 * 8 7 6 10 10 Si 1.86302 * 109.47147 * 4.97631 * 8 7 6 11 11 C 1.38269 * 120.10646 * 359.67715 * 7 6 5 12 12 C 1.38149 * 120.05814 * 0.02562 * 11 7 6 13 13 C 1.50705 * 109.47101 * 120.00139 * 2 1 3 14 14 O 1.21277 * 119.99547 * 254.14473 * 13 2 1 15 15 N 1.34774 * 120.00173 * 74.14485 * 13 2 1 16 16 C 1.46508 * 119.99829 * 5.23919 * 15 13 2 17 17 C 1.46501 * 120.00183 * 185.24069 * 15 13 2 18 18 H 1.08997 * 112.84636 * 11.19742 * 17 15 13 19 19 C 1.53785 * 113.61465 * 142.50057 * 17 15 13 20 20 C 1.53782 * 87.07813 * 89.11645 * 19 17 15 21 21 H 1.08996 * 113.69157 * 270.87066 * 20 19 17 22 22 C 1.50703 * 113.61115 * 139.98295 * 20 19 17 23 23 C 1.38236 * 119.99954 * 322.22519 * 22 20 19 24 24 C 1.38229 * 119.99972 * 179.76627 * 23 22 20 25 25 C 1.38235 * 119.99873 * 0.51433 * 24 23 22 26 26 C 1.38226 * 119.99997 * 359.73996 * 25 24 23 27 27 C 1.38229 * 120.00100 * 142.50198 * 22 20 19 28 28 C 1.53777 * 113.61545 * 239.99837 * 17 15 13 29 29 H 1.09005 * 109.47205 * 175.18924 * 1 2 3 30 30 H 1.08996 * 109.47159 * 55.19200 * 1 2 3 31 31 H 1.09000 * 109.47097 * 295.18544 * 1 2 3 32 32 H 1.09007 * 109.46851 * 239.99936 * 2 1 3 33 33 H 1.07999 * 120.02820 * 0.02562 * 5 4 3 34 34 H 1.07997 * 119.97177 * 180.32430 * 6 5 4 35 35 H 1.09002 * 109.47720 * 124.97710 * 8 7 6 36 36 H 0.96703 * 114.00325 * 180.02562 * 9 8 7 37 37 H 1.48500 * 110.00132 * 300.00442 * 10 8 7 38 38 H 1.48503 * 109.99744 * 61.32083 * 10 8 7 39 39 H 1.07997 * 119.96753 * 179.97438 * 11 7 6 40 40 H 1.07993 * 120.02683 * 180.02562 * 12 11 7 41 41 H 1.08997 * 109.46643 * 95.25153 * 16 15 13 42 42 H 1.08996 * 109.46955 * 215.25294 * 16 15 13 43 43 H 1.09002 * 109.47152 * 335.25078 * 16 15 13 44 44 H 1.08996 * 113.61531 * 203.66550 * 19 17 15 45 45 H 1.09003 * 113.61484 * 334.56959 * 19 17 15 46 46 H 1.08004 * 119.99806 * 0.02562 * 23 22 20 47 47 H 1.08007 * 119.99868 * 180.23067 * 24 23 22 48 48 H 1.08008 * 119.99665 * 179.72769 * 25 24 23 49 49 H 1.08002 * 120.00304 * 179.97438 * 26 25 24 50 50 H 1.07997 * 119.99940 * 0.02562 * 27 22 20 51 51 H 1.09004 * 113.61500 * 25.43599 * 28 17 15 52 52 H 1.08999 * 113.61397 * 156.25009 * 28 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 2.0800 1.9756 -1.2028 5 6 1.7449 1.2947 -2.3641 6 6 1.8148 1.9375 -3.5849 7 6 2.2302 3.2547 -3.6512 8 6 2.3119 3.9514 -4.9849 9 8 3.6740 4.2753 -5.2704 10 14 1.6491 2.8273 -6.3145 11 6 2.5702 3.9337 -2.4958 12 6 2.4962 3.2972 -1.2719 13 6 2.0324 -0.7105 1.2305 14 8 2.5050 -0.0735 2.1479 15 7 1.9564 -2.0536 1.3114 16 6 1.4927 -2.8317 0.1598 17 6 2.3374 -2.7356 2.5507 18 1 2.4760 -2.0492 3.3860 19 6 1.4495 -3.9457 2.8860 20 6 2.4276 -4.7937 2.0559 21 1 2.1698 -4.8500 0.9984 22 6 2.7190 -6.1433 2.6598 23 6 2.8396 -6.2757 4.0306 24 6 3.1020 -7.5145 4.5848 25 6 3.2545 -8.6190 3.7677 26 6 3.1392 -8.4857 2.3967 27 6 2.8714 -7.2478 1.8428 28 6 3.4945 -3.7330 2.3744 29 1 -0.3634 -1.0241 -0.0862 30 1 -0.3633 0.5866 -0.8437 31 1 -0.3633 0.4373 0.9300 32 1 1.8933 -0.5139 -0.8900 33 1 1.4246 0.2645 -2.3133 34 1 1.5489 1.4095 -4.4887 35 1 1.7197 4.8660 -4.9540 36 1 3.8020 4.7273 -6.1157 37 1 2.4480 1.5765 -6.3669 38 1 0.2237 2.5086 -6.0461 39 1 2.8948 4.9623 -2.5502 40 1 2.7615 3.8282 -0.3697 41 1 2.3520 -3.1789 -0.4138 42 1 0.9181 -3.6897 0.5088 43 1 0.8629 -2.2054 -0.4721 44 1 1.4411 -4.2008 3.9457 45 1 0.4497 -3.8861 2.4560 46 1 2.7245 -5.4120 4.6687 47 1 3.1925 -7.6186 5.6561 48 1 3.4640 -9.5861 4.2006 49 1 3.2587 -9.3485 1.7582 50 1 2.7820 -7.1435 0.7716 51 1 4.1456 -3.5017 1.5313 52 1 4.0460 -3.9288 3.2938 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14797354_10157680.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 03:47:24 Heat of formation + Delta-G solvation = 5.202837 kcal Electronic energy + Delta-G solvation = -32613.200174 eV Core-core repulsion = 28318.571363 eV Total energy + Delta-G solvation = -4294.628811 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 368.182 amu Computer time = 6.94 seconds Orbital eigenvalues (eV) -42.27552 -41.48771 -40.41360 -39.30124 -38.66022 -37.22868 -35.83132 -33.39583 -32.16584 -31.93579 -31.78674 -31.40696 -28.52880 -26.96306 -26.76783 -26.21921 -25.10575 -24.26875 -23.56001 -22.68726 -22.02683 -21.10338 -19.86290 -19.58497 -18.51187 -18.34533 -17.99068 -17.55068 -17.06444 -16.94563 -16.80152 -16.38430 -16.17985 -16.03408 -15.72576 -15.51911 -15.31870 -15.03825 -14.76080 -14.56423 -14.48356 -14.24623 -14.17999 -13.98154 -13.96168 -13.84464 -13.68256 -13.60020 -13.26943 -13.13826 -13.03860 -12.90733 -12.71994 -12.41282 -12.32605 -12.12965 -11.95380 -11.86745 -11.75563 -11.65950 -11.23270 -10.94051 -10.27688 -10.20495 -9.87912 -9.81799 -9.55279 -9.35358 -4.91722 0.09859 0.14159 0.41935 0.49305 1.18748 1.29970 1.32571 1.66318 1.97226 2.24401 2.47492 2.82046 3.10554 3.39033 3.42209 3.43868 3.58931 3.60376 3.66190 3.68745 3.75282 3.91235 3.94416 3.99084 4.03306 4.10382 4.14105 4.20556 4.23008 4.29269 4.35871 4.43196 4.46696 4.49019 4.54528 4.57172 4.59696 4.65063 4.69523 4.73429 4.78470 4.79705 4.88151 4.93952 4.99491 5.03493 5.06935 5.12085 5.13012 5.16578 5.34777 5.44875 5.55658 5.58007 5.63777 5.73196 6.03486 6.11774 6.20177 6.85479 6.92909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.064 3.936 3 O -0.310 6.310 4 C 0.122 3.878 5 C -0.203 4.203 6 C -0.094 4.094 7 C -0.129 4.129 8 C -0.078 4.078 9 O -0.566 6.566 10 Si 0.773 3.227 11 C -0.054 4.054 12 C -0.160 4.160 13 C 0.517 3.483 14 O -0.567 6.567 15 N -0.585 5.585 16 C 0.043 3.957 17 C 0.111 3.889 18 H 0.085 0.915 19 C -0.129 4.129 20 C -0.068 4.068 21 H 0.120 0.880 22 C -0.079 4.079 23 C -0.128 4.128 24 C -0.131 4.131 25 C -0.138 4.138 26 C -0.130 4.130 27 C -0.126 4.126 28 C -0.136 4.136 29 H 0.112 0.888 30 H 0.085 0.915 31 H 0.061 0.939 32 H 0.122 0.878 33 H 0.157 0.843 34 H 0.128 0.872 35 H 0.092 0.908 36 H 0.403 0.597 37 H -0.294 1.294 38 H -0.285 1.285 39 H 0.147 0.853 40 H 0.136 0.864 41 H 0.076 0.924 42 H 0.102 0.898 43 H 0.096 0.904 44 H 0.102 0.898 45 H 0.088 0.912 46 H 0.130 0.870 47 H 0.131 0.869 48 H 0.131 0.869 49 H 0.134 0.866 50 H 0.136 0.864 51 H 0.068 0.932 52 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.110 -3.100 -7.137 8.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.005 3.995 3 O -0.224 6.224 4 C 0.076 3.924 5 C -0.222 4.222 6 C -0.112 4.112 7 C -0.129 4.129 8 C -0.187 4.187 9 O -0.376 6.376 10 Si 0.678 3.322 11 C -0.072 4.072 12 C -0.179 4.179 13 C 0.305 3.695 14 O -0.445 6.445 15 N -0.318 5.318 16 C -0.097 4.097 17 C 0.007 3.993 18 H 0.103 0.897 19 C -0.167 4.167 20 C -0.086 4.086 21 H 0.138 0.862 22 C -0.079 4.079 23 C -0.146 4.146 24 C -0.149 4.149 25 C -0.156 4.156 26 C -0.148 4.148 27 C -0.144 4.144 28 C -0.175 4.175 29 H 0.131 0.869 30 H 0.104 0.896 31 H 0.080 0.920 32 H 0.139 0.861 33 H 0.174 0.826 34 H 0.145 0.855 35 H 0.110 0.890 36 H 0.254 0.746 37 H -0.222 1.222 38 H -0.212 1.212 39 H 0.165 0.835 40 H 0.154 0.846 41 H 0.095 0.905 42 H 0.120 0.880 43 H 0.114 0.886 44 H 0.120 0.880 45 H 0.107 0.893 46 H 0.148 0.852 47 H 0.149 0.851 48 H 0.149 0.851 49 H 0.152 0.848 50 H 0.154 0.846 51 H 0.087 0.913 52 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -4.080 -3.741 -6.079 8.222 hybrid contribution 0.298 -0.054 0.945 0.992 sum -3.782 -3.795 -5.134 7.420 Atomic orbital electron populations 1.22393 0.90381 1.05854 1.04366 1.22435 0.97304 0.82035 0.97747 1.86202 1.81087 1.27003 1.28068 1.19198 0.96288 0.92716 0.84156 1.21341 1.07644 1.01848 0.91343 1.20876 0.98841 0.94067 0.97404 1.19676 1.03332 0.94473 0.95409 1.24820 0.88398 1.06117 0.99399 1.86450 1.24007 1.81851 1.45327 0.94302 0.75603 0.77776 0.84486 1.21026 0.95323 1.00700 0.90139 1.20723 1.04907 0.92722 0.99551 1.20499 0.78118 0.82681 0.88226 1.90732 1.45729 1.66696 1.41328 1.47436 1.64975 1.04422 1.14957 1.22587 1.01540 0.98171 0.87442 1.21974 0.97026 0.93612 0.86650 0.89685 1.23448 0.98609 0.92815 1.01859 1.21808 0.96481 0.89541 1.00764 0.86199 1.19862 0.99400 0.95092 0.93531 1.21226 1.00452 0.97883 0.95039 1.21417 0.99757 0.93051 1.00688 1.21443 1.00449 0.99461 0.94237 1.21443 0.99637 0.98222 0.95511 1.21323 1.00146 0.92388 1.00551 1.23417 0.96405 0.94786 1.02866 0.86930 0.89634 0.92009 0.86069 0.82559 0.85513 0.88973 0.74629 1.22175 1.21188 0.83484 0.84586 0.90522 0.87976 0.88564 0.88000 0.89298 0.85244 0.85085 0.85095 0.84806 0.84592 0.91296 0.88969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 0.47 8.93 71.98 0.64 1.12 16 2 C 0.06 0.15 1.80 29.85 0.05 0.20 16 3 O -0.31 -3.09 9.38 -73.81 -0.69 -3.78 16 4 C 0.12 0.93 6.52 22.51 0.15 1.08 16 5 C -0.20 -0.72 8.32 22.37 0.19 -0.53 16 6 C -0.09 -0.43 8.66 22.26 0.19 -0.24 16 7 C -0.13 -0.65 5.38 -19.85 -0.11 -0.76 16 8 C -0.08 0.05 2.79 71.23 0.20 0.25 16 9 O -0.57 -0.03 12.81 -148.98 -1.91 -1.94 16 10 Si 0.77 -2.33 29.84 68.60 2.05 -0.28 16 11 C -0.05 -0.30 9.68 22.26 0.22 -0.08 16 12 C -0.16 -1.23 9.99 22.37 0.22 -1.01 16 13 C 0.52 3.67 6.97 87.66 0.61 4.28 16 14 O -0.57 -10.11 16.07 15.63 0.25 -9.86 16 15 N -0.59 0.07 3.08 -819.64 -2.53 -2.46 16 16 C 0.04 -0.38 8.25 127.77 1.05 0.67 16 17 C 0.11 0.09 4.44 45.52 0.20 0.29 16 18 H 0.08 0.53 7.27 -2.39 -0.02 0.51 16 19 C -0.13 0.50 6.67 31.12 0.21 0.71 16 20 C -0.07 0.27 3.32 -11.01 -0.04 0.24 16 21 H 0.12 -0.90 5.54 -2.39 -0.01 -0.91 16 22 C -0.08 0.04 5.29 -19.87 -0.11 -0.06 16 23 C -0.13 -0.06 8.60 22.27 0.19 0.13 16 24 C -0.13 -0.15 10.05 22.27 0.22 0.07 16 25 C -0.14 -0.15 10.05 22.27 0.22 0.08 16 26 C -0.13 -0.05 10.05 22.27 0.22 0.17 16 27 C -0.13 0.06 9.71 22.27 0.22 0.28 16 28 C -0.14 0.10 7.21 31.12 0.22 0.33 16 29 H 0.11 -1.03 6.19 -2.38 -0.01 -1.04 16 30 H 0.08 -0.30 7.30 -2.39 -0.02 -0.32 16 31 H 0.06 0.08 8.14 -2.39 -0.02 0.06 16 32 H 0.12 -0.42 5.12 -2.38 -0.01 -0.43 16 33 H 0.16 -0.46 5.70 -2.91 -0.02 -0.48 16 34 H 0.13 0.32 4.86 -2.91 -0.01 0.31 16 35 H 0.09 -0.42 7.96 -2.39 -0.02 -0.44 16 36 H 0.40 -4.26 8.74 -74.06 -0.65 -4.91 16 37 H -0.29 -1.16 7.05 99.48 0.70 -0.46 16 38 H -0.28 -0.51 7.11 99.48 0.71 0.20 16 39 H 0.15 0.32 8.06 -2.91 -0.02 0.30 16 40 H 0.14 0.91 8.06 -2.91 -0.02 0.89 16 41 H 0.08 -0.78 8.04 -2.39 -0.02 -0.80 16 42 H 0.10 -1.18 5.17 -2.39 -0.01 -1.20 16 43 H 0.10 -1.18 4.42 -2.39 -0.01 -1.19 16 44 H 0.10 -0.39 6.32 -2.39 -0.02 -0.40 16 45 H 0.09 -0.51 7.28 -2.39 -0.02 -0.53 16 46 H 0.13 -0.25 6.67 -2.91 -0.02 -0.27 16 47 H 0.13 -0.23 8.06 -2.91 -0.02 -0.25 16 48 H 0.13 -0.25 8.06 -2.91 -0.02 -0.27 16 49 H 0.13 -0.40 8.06 -2.91 -0.02 -0.42 16 50 H 0.14 -0.61 8.05 -2.91 -0.02 -0.64 16 51 H 0.07 0.04 8.14 -2.38 -0.02 0.02 16 52 H 0.09 0.01 7.72 -2.39 -0.02 -0.01 16 Total: 0.00 -26.30 406.96 2.50 -23.80 By element: Atomic # 1 Polarization: -13.03 SS G_CDS: 0.34 Total: -12.69 kcal Atomic # 6 Polarization: 2.21 SS G_CDS: 4.99 Total: 7.20 kcal Atomic # 7 Polarization: 0.07 SS G_CDS: -2.53 Total: -2.46 kcal Atomic # 8 Polarization: -13.23 SS G_CDS: -2.35 Total: -15.58 kcal Atomic # 14 Polarization: -2.33 SS G_CDS: 2.05 Total: -0.28 kcal Total: -26.30 2.50 -23.80 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14797354_10157680.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.003 kcal (2) G-P(sol) polarization free energy of solvation -26.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.94 seconds