Wall clock time and date at job start Sun Mar 7 2021 03:47:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.34775 * 120.00007 * 2 1 4 4 O 1.21696 * 119.99459 * 186.10229 * 3 2 1 5 5 C 1.46676 * 120.00420 * 6.10475 * 3 2 1 6 6 C 1.37875 * 126.22940 * 359.02763 * 5 3 2 7 7 C 1.39837 * 107.08538 * 180.11889 * 6 5 3 8 8 C 1.50699 * 126.07055 * 179.83760 * 7 6 5 9 9 O 1.42903 * 109.46745 * 64.71653 * 8 7 6 10 10 Si 1.86298 * 109.47264 * 184.71600 * 8 7 6 11 11 C 1.35453 * 107.86103 * 359.57704 * 7 6 5 12 12 N 1.35534 * 108.87491 * 0.26463 * 11 7 6 13 13 C 1.46504 * 125.67992 * 179.97438 * 12 11 7 14 14 C 1.46497 * 119.99764 * 179.97438 * 2 1 3 15 15 H 1.09002 * 112.85207 * 160.08420 * 14 2 1 16 16 C 1.53777 * 113.61630 * 291.28406 * 14 2 1 17 17 C 1.53780 * 87.08122 * 89.11606 * 16 14 2 18 18 H 1.08994 * 113.61520 * 270.88103 * 17 16 14 19 19 C 1.50704 * 113.61515 * 139.98210 * 17 16 14 20 20 C 1.38236 * 120.00048 * 299.72625 * 19 17 16 21 21 C 1.38238 * 119.99950 * 179.76497 * 20 19 17 22 22 C 1.38228 * 120.00052 * 0.48432 * 21 20 19 23 23 C 1.38244 * 119.99997 * 359.79119 * 22 21 20 24 24 C 1.38233 * 119.99734 * 359.95753 * 23 22 21 25 25 C 1.53773 * 87.08447 * 25.43384 * 17 16 14 26 26 H 1.09000 * 109.46682 * 54.10187 * 1 2 3 27 27 H 1.08996 * 109.47204 * 174.09986 * 1 2 3 28 28 H 1.08993 * 109.47003 * 294.10893 * 1 2 3 29 29 H 1.08006 * 126.45937 * 359.95819 * 6 5 3 30 30 H 1.09000 * 109.47012 * 304.71485 * 8 7 6 31 31 H 0.96703 * 113.99558 * 179.97438 * 9 8 7 32 32 H 1.48501 * 110.00003 * 300.00320 * 10 8 7 33 33 H 1.48502 * 110.00030 * 61.31864 * 10 8 7 34 34 H 1.08001 * 125.56475 * 180.28452 * 11 7 6 35 35 H 1.08995 * 109.46955 * 86.33574 * 13 12 11 36 36 H 1.09000 * 109.46488 * 206.33339 * 13 12 11 37 37 H 1.09004 * 109.46634 * 326.33162 * 13 12 11 38 38 H 1.09008 * 113.61416 * 203.66311 * 16 14 2 39 39 H 1.08996 * 113.61652 * 334.48118 * 16 14 2 40 40 H 1.07998 * 119.99695 * 0.02562 * 20 19 17 41 41 H 1.07999 * 119.99732 * 180.25461 * 21 20 19 42 42 H 1.07995 * 120.00196 * 179.76701 * 22 21 20 43 43 H 1.07996 * 119.99563 * 179.97438 * 23 22 21 44 44 H 1.07999 * 119.99551 * 180.02562 * 24 23 22 45 45 H 1.08999 * 113.61789 * 220.02196 * 25 17 16 46 46 H 1.08999 * 113.61493 * 89.11346 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3507 1.1701 -0.1120 5 6 1.4119 2.4339 0.1351 6 6 0.0459 2.5811 0.2505 7 6 -0.2124 3.9516 0.3528 8 6 -1.5700 4.5905 0.4935 9 8 -2.1539 4.1992 1.7377 10 14 -1.3917 6.4444 0.4470 11 6 0.9746 4.6025 0.3087 12 7 1.9695 3.6917 0.1765 13 6 3.4002 3.9953 0.0914 14 6 2.1975 -1.2687 0.0006 15 1 3.2270 -1.1633 -0.3416 16 6 2.0626 -2.0574 1.3138 17 6 0.8164 -2.7158 0.6987 18 1 -0.1061 -2.1675 0.8892 19 6 0.6980 -4.1868 1.0038 20 6 1.6897 -5.0593 0.5961 21 6 1.5835 -6.4080 0.8802 22 6 0.4808 -6.8856 1.5633 23 6 -0.5138 -6.0140 1.9660 24 6 -0.4050 -4.6646 1.6864 25 6 1.4359 -2.4200 -0.6773 26 1 -0.3633 0.6026 -0.8325 27 1 -0.3633 -1.0222 -0.1056 28 1 -0.3633 0.4197 0.9380 29 1 -0.6868 1.7876 0.2577 30 1 -2.2108 4.2665 -0.3265 31 1 -3.0309 4.5746 1.8959 32 1 -0.5200 6.8989 1.5601 33 1 -0.8149 6.8667 -0.8546 34 1 1.1068 5.6727 0.3693 35 1 3.8165 4.0683 1.0961 36 1 3.9082 3.2010 -0.4555 37 1 3.5402 4.9424 -0.4297 38 1 2.8820 -2.7541 1.4909 39 1 1.8451 -1.4310 2.1789 40 1 2.5495 -4.6866 0.0592 41 1 2.3603 -7.0890 0.5652 42 1 0.3959 -7.9398 1.7819 43 1 -1.3755 -6.3873 2.4993 44 1 -1.1818 -3.9836 2.0015 45 1 0.7111 -2.0865 -1.4200 46 1 2.0840 -3.2158 -1.0445 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14797354_10803934.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 03:47:48 Heat of formation + Delta-G solvation = 78.970353 kcal Electronic energy + Delta-G solvation = -27698.611149 eV Core-core repulsion = 23944.201178 eV Total energy + Delta-G solvation = -3754.409971 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 327.162 amu Computer time = 2.78 seconds Orbital eigenvalues (eV) -42.85158 -41.68564 -40.09830 -38.80846 -37.58001 -35.93466 -33.98044 -32.17140 -31.75478 -30.75670 -29.02378 -28.26271 -26.75075 -26.32058 -25.33835 -24.05124 -23.37518 -21.93441 -21.62773 -20.13620 -19.79764 -18.40187 -18.19215 -18.08867 -17.41862 -17.15125 -16.95150 -16.31042 -16.12497 -15.94132 -15.47934 -15.37097 -15.02342 -14.97813 -14.84493 -14.44933 -14.31577 -14.22146 -14.06247 -13.84846 -13.74319 -13.57774 -13.37048 -13.32765 -13.01752 -12.72171 -12.48683 -12.36322 -12.01804 -11.95430 -11.71580 -11.61405 -11.24901 -11.04116 -10.19762 -9.91379 -9.80314 -9.75707 -9.54943 -9.39909 -4.91856 0.23425 0.44040 0.51494 1.30029 1.35433 1.44185 1.72673 2.03546 2.06320 2.12035 2.84001 3.27564 3.45519 3.59218 3.62844 3.68380 3.70842 3.90975 3.92804 3.99061 4.03694 4.10206 4.16677 4.17907 4.21415 4.29859 4.30776 4.49240 4.52957 4.54571 4.59551 4.60451 4.66537 4.70089 4.70713 4.78523 4.82052 4.91471 4.94636 5.03993 5.14320 5.17696 5.19054 5.43960 5.58952 5.61078 5.65797 5.74798 5.76119 5.95561 6.13794 6.15576 6.90815 7.06130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 N -0.578 5.578 3 C 0.585 3.415 4 O -0.584 6.584 5 C -0.074 4.074 6 C -0.125 4.125 7 C -0.183 4.183 8 C -0.039 4.039 9 O -0.566 6.566 10 Si 0.774 3.226 11 C 0.008 3.992 12 N -0.415 5.415 13 C 0.060 3.940 14 C 0.114 3.886 15 H 0.089 0.911 16 C -0.136 4.136 17 C -0.070 4.070 18 H 0.119 0.881 19 C -0.079 4.079 20 C -0.127 4.127 21 C -0.131 4.131 22 C -0.138 4.138 23 C -0.130 4.130 24 C -0.127 4.127 25 C -0.129 4.129 26 H 0.084 0.916 27 H 0.110 0.890 28 H 0.080 0.920 29 H 0.191 0.809 30 H 0.093 0.907 31 H 0.401 0.599 32 H -0.301 1.301 33 H -0.292 1.292 34 H 0.172 0.828 35 H 0.082 0.918 36 H 0.093 0.907 37 H 0.105 0.895 38 H 0.095 0.905 39 H 0.064 0.936 40 H 0.131 0.869 41 H 0.132 0.868 42 H 0.132 0.868 43 H 0.134 0.866 44 H 0.135 0.865 45 H 0.088 0.912 46 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.889 0.377 -0.947 6.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 N -0.308 5.308 3 C 0.376 3.624 4 O -0.467 6.467 5 C -0.186 4.186 6 C -0.151 4.151 7 C -0.189 4.189 8 C -0.150 4.150 9 O -0.375 6.375 10 Si 0.680 3.320 11 C -0.129 4.129 12 N -0.088 5.088 13 C -0.080 4.080 14 C 0.010 3.990 15 H 0.107 0.893 16 C -0.175 4.175 17 C -0.088 4.088 18 H 0.137 0.863 19 C -0.079 4.079 20 C -0.145 4.145 21 C -0.149 4.149 22 C -0.156 4.156 23 C -0.148 4.148 24 C -0.145 4.145 25 C -0.166 4.166 26 H 0.103 0.897 27 H 0.128 0.872 28 H 0.098 0.902 29 H 0.208 0.792 30 H 0.111 0.889 31 H 0.252 0.748 32 H -0.229 1.229 33 H -0.219 1.219 34 H 0.189 0.811 35 H 0.100 0.900 36 H 0.112 0.888 37 H 0.124 0.876 38 H 0.113 0.887 39 H 0.083 0.917 40 H 0.149 0.851 41 H 0.150 0.850 42 H 0.150 0.850 43 H 0.152 0.848 44 H 0.153 0.847 45 H 0.107 0.893 46 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -4.764 0.757 -1.064 4.939 hybrid contribution 0.781 -0.346 0.060 0.857 sum -3.982 0.410 -1.004 4.127 Atomic orbital electron populations 1.22952 0.77612 1.05854 1.03241 1.47140 1.08027 1.03896 1.71765 1.17150 0.85860 0.83285 0.76069 1.90746 1.15144 1.87674 1.53087 1.20128 0.93314 0.85473 1.19711 1.22575 0.93130 0.97402 1.01958 1.19275 0.93718 0.94325 1.11612 1.24071 0.91478 1.09957 0.89447 1.86454 1.38403 1.75743 1.36950 0.94371 0.87432 0.74151 0.76039 1.22011 0.87478 0.95372 1.08007 1.43978 1.07882 1.04907 1.52004 1.22446 0.76514 1.04523 1.04552 1.21997 0.96713 0.82148 0.98127 0.89273 1.23451 0.98503 0.98617 0.96883 1.21842 0.99073 0.91482 0.96402 0.86347 1.19844 0.94722 0.95147 0.98170 1.21228 0.99291 0.93417 1.00578 1.21419 0.98561 0.96033 0.98855 1.21448 0.94593 1.00641 0.98890 1.21444 0.99524 0.93801 1.00027 1.21329 0.98202 0.95987 0.98955 1.23470 0.99942 0.96717 0.96511 0.89744 0.87193 0.90150 0.79188 0.88941 0.74831 1.22860 1.21881 0.81124 0.89994 0.88791 0.87603 0.88658 0.91682 0.85078 0.84984 0.85049 0.84788 0.84693 0.89318 0.87553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 -0.17 7.41 127.77 0.95 0.78 16 2 N -0.58 -1.84 3.07 -824.34 -2.53 -4.37 16 3 C 0.59 5.84 7.63 86.45 0.66 6.50 16 4 O -0.58 -9.34 14.13 -4.34 -0.06 -9.40 16 5 C -0.07 -0.64 6.83 40.35 0.28 -0.37 16 6 C -0.13 -0.60 8.74 22.57 0.20 -0.40 16 7 C -0.18 -0.97 5.46 -20.12 -0.11 -1.08 16 8 C -0.04 0.04 3.01 71.24 0.21 0.26 16 9 O -0.57 0.59 12.86 -148.98 -1.92 -1.32 16 10 Si 0.77 -2.06 30.60 68.60 2.10 0.04 16 11 C 0.01 0.05 9.94 83.48 0.83 0.88 16 12 N -0.42 -3.44 3.16 -534.30 -1.69 -5.13 16 13 C 0.06 0.27 10.70 127.77 1.37 1.63 16 14 C 0.11 0.22 4.41 45.52 0.20 0.42 16 15 H 0.09 0.55 7.33 -2.39 -0.02 0.53 16 16 C -0.14 -0.06 7.31 31.12 0.23 0.17 16 17 C -0.07 0.19 3.32 -11.02 -0.04 0.15 16 18 H 0.12 -0.63 5.53 -2.39 -0.01 -0.65 16 19 C -0.08 -0.02 5.29 -19.86 -0.11 -0.12 16 20 C -0.13 -0.09 8.62 22.27 0.19 0.10 16 21 C -0.13 -0.16 10.05 22.27 0.22 0.06 16 22 C -0.14 -0.18 10.05 22.27 0.22 0.04 16 23 C -0.13 -0.12 10.05 22.27 0.22 0.11 16 24 C -0.13 -0.04 9.71 22.27 0.22 0.17 16 25 C -0.13 0.37 6.64 31.12 0.21 0.57 16 26 H 0.08 -0.42 6.54 -2.39 -0.02 -0.44 16 27 H 0.11 -0.84 3.96 -2.39 -0.01 -0.85 16 28 H 0.08 -0.35 6.43 -2.39 -0.02 -0.37 16 29 H 0.19 -0.20 4.05 -2.91 -0.01 -0.21 16 30 H 0.09 -0.51 7.96 -2.39 -0.02 -0.53 16 31 H 0.40 -4.69 8.74 -74.06 -0.65 -5.34 16 32 H -0.30 -1.51 7.11 99.48 0.71 -0.80 16 33 H -0.29 -0.85 7.11 99.48 0.71 -0.14 16 34 H 0.17 0.61 6.21 -2.91 -0.02 0.59 16 35 H 0.08 0.27 8.14 -2.39 -0.02 0.25 16 36 H 0.09 0.75 6.09 -2.39 -0.01 0.73 16 37 H 0.11 -0.10 8.14 -2.38 -0.02 -0.11 16 38 H 0.09 0.04 7.73 -2.38 -0.02 0.02 16 39 H 0.06 0.17 8.14 -2.39 -0.02 0.15 16 40 H 0.13 -0.27 6.64 -2.91 -0.02 -0.29 16 41 H 0.13 -0.24 8.06 -2.91 -0.02 -0.27 16 42 H 0.13 -0.23 8.06 -2.91 -0.02 -0.26 16 43 H 0.13 -0.33 8.06 -2.91 -0.02 -0.36 16 44 H 0.14 -0.45 8.06 -2.91 -0.02 -0.47 16 45 H 0.09 -0.38 7.25 -2.39 -0.02 -0.40 16 46 H 0.11 -0.39 6.30 -2.39 -0.02 -0.40 16 Total: 0.00 -22.17 360.61 2.26 -19.91 By element: Atomic # 1 Polarization: -10.02 SS G_CDS: 0.41 Total: -9.61 kcal Atomic # 6 Polarization: 3.94 SS G_CDS: 5.95 Total: 9.89 kcal Atomic # 7 Polarization: -5.28 SS G_CDS: -4.22 Total: -9.50 kcal Atomic # 8 Polarization: -8.75 SS G_CDS: -1.98 Total: -10.73 kcal Atomic # 14 Polarization: -2.06 SS G_CDS: 2.10 Total: 0.04 kcal Total: -22.17 2.26 -19.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14797354_10803934.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.878 kcal (2) G-P(sol) polarization free energy of solvation -22.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.908 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.78 seconds