Wall clock time and date at job start Sun Mar 7 2021 03:47:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34783 * 119.99931 * 2 1 4 4 O 1.21696 * 119.99719 * 183.16295 * 3 2 1 5 5 C 1.46672 * 119.99950 * 3.15563 * 3 2 1 6 6 C 1.37873 * 126.23493 * 352.90635 * 5 3 2 7 7 C 1.39835 * 107.08445 * 180.02562 * 6 5 3 8 8 C 1.35448 * 107.86759 * 0.02562 * 7 6 5 9 9 C 1.50703 * 125.56613 * 179.97438 * 8 7 6 10 10 O 1.42901 * 109.47035 * 210.02428 * 9 8 7 11 11 Si 1.86295 * 109.46979 * 330.01904 * 9 8 7 12 12 N 1.35534 * 108.86966 * 0.26187 * 8 7 6 13 13 C 1.46511 * 125.67738 * 179.71966 * 12 8 7 14 14 C 1.46497 * 120.00101 * 179.97438 * 2 1 3 15 15 H 1.09003 * 112.85346 * 199.05368 * 14 2 1 16 16 C 1.53787 * 113.61404 * 330.25123 * 14 2 1 17 17 C 1.54058 * 86.98212 * 89.16045 * 16 14 2 18 18 H 1.08999 * 113.60892 * 270.88115 * 17 16 14 19 19 C 1.50703 * 113.69315 * 139.99236 * 17 16 14 20 20 C 1.38243 * 119.99749 * 322.19334 * 19 17 16 21 21 C 1.38238 * 119.99581 * 179.77028 * 20 19 17 22 22 C 1.38228 * 120.00006 * 0.50171 * 21 20 19 23 23 C 1.38242 * 120.00081 * 359.74721 * 22 21 20 24 24 C 1.38228 * 119.99972 * 142.46533 * 19 17 16 25 25 C 1.53776 * 113.61278 * 67.85922 * 14 2 1 26 26 H 1.08999 * 109.46893 * 65.66473 * 1 2 3 27 27 H 1.08999 * 109.47579 * 185.66517 * 1 2 3 28 28 H 1.09001 * 109.47371 * 305.67053 * 1 2 3 29 29 H 1.07991 * 126.45662 * 0.05625 * 6 5 3 30 30 H 1.08001 * 126.06473 * 179.97438 * 7 6 5 31 31 H 1.09001 * 109.47209 * 90.02425 * 9 8 7 32 32 H 0.96695 * 114.00368 * 59.99352 * 10 9 8 33 33 H 1.48501 * 109.99803 * 58.68517 * 11 9 8 34 34 H 1.48498 * 110.00014 * 179.97438 * 11 9 8 35 35 H 1.08997 * 109.46953 * 93.71418 * 13 12 8 36 36 H 1.09001 * 109.46858 * 213.71718 * 13 12 8 37 37 H 1.08994 * 109.46657 * 333.71048 * 13 12 8 38 38 H 1.08998 * 113.61493 * 203.66034 * 16 14 2 39 39 H 1.09003 * 113.61303 * 334.56768 * 16 14 2 40 40 H 1.08002 * 119.99667 * 359.97438 * 20 19 17 41 41 H 1.07994 * 119.99571 * 180.23011 * 21 20 19 42 42 H 1.07999 * 120.00229 * 179.72944 * 22 21 20 43 43 H 1.07999 * 120.00071 * 179.97438 * 23 22 21 44 44 H 1.07996 * 120.00051 * 0.02562 * 24 19 17 45 45 H 1.08996 * 113.61693 * 25.43147 * 25 14 2 46 46 H 1.09006 * 113.61561 * 156.33973 * 25 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3544 1.1680 -0.0582 5 6 1.4071 2.4365 0.0699 6 6 0.0390 2.5933 0.0020 7 6 -0.2233 3.9627 0.1084 8 6 0.9627 4.6043 0.2361 9 6 1.1426 6.0938 0.3789 10 8 2.3955 6.4790 -0.1902 11 14 -0.2391 6.9740 -0.5081 12 7 1.9617 3.6888 0.2079 13 6 3.3933 3.9827 0.3114 14 6 2.1975 -1.2687 0.0006 15 1 3.2314 -1.1604 0.3284 16 6 1.4460 -2.4136 0.7003 17 6 0.8075 -2.7215 -0.6675 18 1 -0.1175 -2.1747 -0.8505 19 6 0.6842 -4.1946 -0.9604 20 6 1.6863 -5.0632 -0.5699 21 6 1.5710 -6.4151 -0.8344 22 6 0.4586 -6.8970 -1.4985 23 6 -0.5411 -6.0277 -1.8936 24 6 -0.4282 -4.6765 -1.6246 25 6 2.0456 -2.0682 -1.3042 26 1 -0.3633 0.4235 -0.9364 27 1 -0.3634 -1.0226 0.1014 28 1 -0.3634 0.5993 0.8349 29 1 -0.6922 1.8067 -0.1114 30 1 -1.1985 4.4265 0.0910 31 1 1.1255 6.3622 1.4352 32 1 2.4813 6.2700 -1.1304 33 1 -1.5494 6.5578 0.0533 34 1 -0.0736 8.4436 -0.3743 35 1 3.7070 3.8994 1.3519 36 1 3.9547 3.2724 -0.2955 37 1 3.5829 4.9950 -0.0454 38 1 2.0995 -3.2059 1.0653 39 1 0.7321 -2.0731 1.4503 40 1 2.5576 -4.6859 -0.0553 41 1 2.3521 -7.0942 -0.5260 42 1 0.3705 -7.9526 -1.7090 43 1 -1.4100 -6.4042 -2.4128 44 1 -1.2088 -3.9973 -1.9339 45 1 1.8153 -1.4493 -2.1713 46 1 2.8627 -2.7664 -1.4861 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14797354_10803936.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 03:47:55 Heat of formation + Delta-G solvation = 81.046307 kcal Electronic energy + Delta-G solvation = -27686.854032 eV Core-core repulsion = 23932.534081 eV Total energy + Delta-G solvation = -3754.319950 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 327.162 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.76810 -41.65468 -40.07608 -38.76387 -37.83537 -35.81837 -33.71587 -32.17557 -31.75274 -31.03556 -28.82458 -27.52898 -27.09988 -26.64102 -25.56363 -23.64369 -23.06088 -22.00639 -21.61895 -20.40404 -19.80033 -18.45680 -18.29571 -17.74039 -17.35961 -17.03889 -16.46916 -16.37102 -16.10913 -15.86560 -15.54459 -15.41535 -15.13450 -14.97726 -14.75264 -14.58138 -14.28485 -14.20585 -14.02152 -13.84800 -13.67282 -13.51620 -13.21836 -13.17581 -12.99129 -12.71324 -12.46567 -12.15773 -12.07759 -11.90048 -11.67894 -11.55816 -11.21807 -10.98281 -10.63214 -9.88207 -9.79181 -9.68804 -9.51995 -9.11854 -4.90253 0.34032 0.45328 0.52616 1.17209 1.44372 1.68614 1.74596 2.00280 2.23823 2.25513 2.85245 3.24928 3.35915 3.52126 3.57717 3.66402 3.71422 3.93582 3.99989 4.01064 4.14698 4.18691 4.23914 4.29381 4.31849 4.33289 4.40119 4.52736 4.53998 4.59380 4.62691 4.68171 4.73070 4.75929 4.81821 4.85690 4.94414 4.97737 5.03024 5.12126 5.15849 5.19989 5.22286 5.51521 5.61080 5.66849 5.74267 5.77355 5.96396 6.11732 6.14996 6.25729 6.53648 7.01357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.579 5.579 3 C 0.581 3.419 4 O -0.589 6.589 5 C -0.080 4.080 6 C -0.142 4.142 7 C -0.215 4.215 8 C 0.015 3.985 9 C -0.060 4.060 10 O -0.553 6.553 11 Si 0.813 3.187 12 N -0.403 5.403 13 C 0.054 3.946 14 C 0.115 3.885 15 H 0.084 0.916 16 C -0.131 4.131 17 C -0.070 4.070 18 H 0.122 0.878 19 C -0.079 4.079 20 C -0.128 4.128 21 C -0.131 4.131 22 C -0.138 4.138 23 C -0.130 4.130 24 C -0.126 4.126 25 C -0.134 4.134 26 H 0.086 0.914 27 H 0.106 0.894 28 H 0.087 0.913 29 H 0.193 0.807 30 H 0.164 0.836 31 H 0.113 0.887 32 H 0.396 0.604 33 H -0.271 1.271 34 H -0.294 1.294 35 H 0.060 0.940 36 H 0.081 0.919 37 H 0.128 0.872 38 H 0.103 0.897 39 H 0.087 0.913 40 H 0.130 0.870 41 H 0.131 0.869 42 H 0.131 0.869 43 H 0.134 0.866 44 H 0.137 0.863 45 H 0.068 0.932 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.433 -0.989 -2.398 6.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 N -0.309 5.309 3 C 0.373 3.627 4 O -0.472 6.472 5 C -0.192 4.192 6 C -0.168 4.168 7 C -0.239 4.239 8 C -0.104 4.104 9 C -0.168 4.168 10 O -0.361 6.361 11 Si 0.715 3.285 12 N -0.076 5.076 13 C -0.087 4.087 14 C 0.011 3.989 15 H 0.102 0.898 16 C -0.168 4.168 17 C -0.087 4.087 18 H 0.140 0.860 19 C -0.079 4.079 20 C -0.146 4.146 21 C -0.149 4.149 22 C -0.156 4.156 23 C -0.148 4.148 24 C -0.144 4.144 25 C -0.173 4.173 26 H 0.104 0.896 27 H 0.125 0.875 28 H 0.105 0.895 29 H 0.210 0.790 30 H 0.181 0.819 31 H 0.130 0.870 32 H 0.247 0.753 33 H -0.197 1.197 34 H -0.222 1.222 35 H 0.078 0.922 36 H 0.100 0.900 37 H 0.146 0.854 38 H 0.122 0.878 39 H 0.105 0.895 40 H 0.148 0.852 41 H 0.149 0.851 42 H 0.149 0.851 43 H 0.152 0.848 44 H 0.155 0.845 45 H 0.087 0.913 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -4.955 -0.224 -1.719 5.249 hybrid contribution 0.796 -0.479 0.735 1.184 sum -4.159 -0.703 -0.985 4.331 Atomic orbital electron populations 1.23014 0.77540 1.05803 1.03598 1.47159 1.08090 1.03804 1.71882 1.17291 0.85938 0.83520 0.75960 1.90764 1.15154 1.87860 1.53388 1.20095 0.93601 0.85348 1.20202 1.22663 0.92892 0.98164 1.03041 1.21006 0.97364 0.94141 1.11369 1.21431 0.88183 0.92643 1.08097 1.25267 0.97331 0.90094 1.04096 1.86416 1.35045 1.83918 1.30721 0.92912 0.72522 0.74552 0.88534 1.43914 1.07350 1.04625 1.51726 1.22608 0.77090 1.05758 1.03198 1.21950 0.96454 0.82355 0.98117 0.89777 1.23520 0.99916 0.96792 0.96603 1.21915 0.99196 0.91364 0.96245 0.86041 1.19860 0.94557 0.95236 0.98213 1.21227 0.99255 0.93434 1.00669 1.21410 0.98538 0.95991 0.98996 1.21443 0.94559 1.00649 0.98968 1.21447 0.99486 0.93851 1.00016 1.21332 0.98175 0.95927 0.98941 1.23421 0.98353 0.98519 0.96980 0.89582 0.87549 0.89526 0.79034 0.81856 0.86981 0.75301 1.19703 1.22199 0.92152 0.90005 0.85430 0.87847 0.89453 0.85226 0.85098 0.85116 0.84776 0.84506 0.91342 0.88938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 -0.25 7.45 127.77 0.95 0.70 16 2 N -0.58 -1.02 3.07 -824.36 -2.53 -3.56 16 3 C 0.58 5.00 7.64 86.44 0.66 5.66 16 4 O -0.59 -9.25 14.30 -4.34 -0.06 -9.31 16 5 C -0.08 -0.47 6.81 40.35 0.27 -0.20 16 6 C -0.14 -0.03 8.78 22.57 0.20 0.17 16 7 C -0.22 0.02 9.37 22.01 0.21 0.22 16 8 C 0.01 0.02 6.15 41.34 0.25 0.28 16 9 C -0.06 0.09 2.99 71.24 0.21 0.30 16 10 O -0.55 0.94 9.93 -148.98 -1.48 -0.54 16 11 Si 0.81 -3.70 31.29 68.60 2.15 -1.55 16 12 N -0.40 -2.22 3.16 -519.69 -1.64 -3.86 16 13 C 0.05 0.26 10.29 127.77 1.31 1.58 16 14 C 0.12 0.15 4.36 45.52 0.20 0.35 16 15 H 0.08 0.51 7.39 -2.39 -0.02 0.49 16 16 C -0.13 0.42 6.67 31.22 0.21 0.63 16 17 C -0.07 0.25 3.32 -10.92 -0.04 0.22 16 18 H 0.12 -0.83 5.47 -2.39 -0.01 -0.85 16 19 C -0.08 0.04 5.29 -19.86 -0.11 -0.07 16 20 C -0.13 -0.06 8.60 22.27 0.19 0.13 16 21 C -0.13 -0.14 10.05 22.27 0.22 0.09 16 22 C -0.14 -0.14 10.05 22.27 0.22 0.09 16 23 C -0.13 -0.04 10.05 22.27 0.22 0.18 16 24 C -0.13 0.06 9.71 22.27 0.22 0.28 16 25 C -0.13 0.07 7.30 31.12 0.23 0.30 16 26 H 0.09 -0.73 6.83 -2.39 -0.02 -0.75 16 27 H 0.11 -0.99 3.93 -2.39 -0.01 -1.00 16 28 H 0.09 -0.61 6.09 -2.39 -0.01 -0.62 16 29 H 0.19 -1.21 4.11 -2.92 -0.01 -1.22 16 30 H 0.16 -0.63 6.62 -2.91 -0.02 -0.65 16 31 H 0.11 -0.04 7.96 -2.39 -0.02 -0.05 16 32 H 0.40 -3.46 8.43 -74.06 -0.62 -4.08 16 33 H -0.27 0.33 6.76 99.48 0.67 1.01 16 34 H -0.29 -0.71 7.11 99.48 0.71 0.00 16 35 H 0.06 0.38 8.14 -2.39 -0.02 0.37 16 36 H 0.08 0.68 6.41 -2.39 -0.02 0.66 16 37 H 0.13 0.08 4.90 -2.39 -0.01 0.07 16 38 H 0.10 -0.37 6.34 -2.39 -0.02 -0.39 16 39 H 0.09 -0.39 7.31 -2.39 -0.02 -0.41 16 40 H 0.13 -0.26 6.68 -2.91 -0.02 -0.28 16 41 H 0.13 -0.24 8.06 -2.91 -0.02 -0.27 16 42 H 0.13 -0.26 8.06 -2.91 -0.02 -0.29 16 43 H 0.13 -0.41 8.06 -2.91 -0.02 -0.44 16 44 H 0.14 -0.62 8.05 -2.91 -0.02 -0.64 16 45 H 0.07 0.07 8.14 -2.39 -0.02 0.05 16 46 H 0.09 0.00 7.71 -2.38 -0.02 -0.02 16 Total: 0.00 -19.71 355.19 2.48 -17.24 By element: Atomic # 1 Polarization: -9.72 SS G_CDS: 0.40 Total: -9.32 kcal Atomic # 6 Polarization: 5.25 SS G_CDS: 5.64 Total: 10.90 kcal Atomic # 7 Polarization: -3.24 SS G_CDS: -4.18 Total: -7.42 kcal Atomic # 8 Polarization: -8.31 SS G_CDS: -1.54 Total: -9.85 kcal Atomic # 14 Polarization: -3.70 SS G_CDS: 2.15 Total: -1.55 kcal Total: -19.71 2.48 -17.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14797354_10803936.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.284 kcal (2) G-P(sol) polarization free energy of solvation -19.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.238 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds