Wall clock time and date at job start Sun Mar 7 2021 03:48:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34773 * 120.00124 * 2 1 4 4 O 1.21286 * 119.99989 * 180.02562 * 3 2 1 5 5 C 1.50694 * 120.00159 * 359.97438 * 3 2 1 6 6 C 1.50699 * 109.47257 * 180.02562 * 5 3 2 7 7 C 1.38227 * 120.00172 * 269.72551 * 6 5 3 8 8 C 1.38237 * 120.00272 * 179.78956 * 7 6 5 9 9 C 1.38240 * 119.99624 * 0.46143 * 8 7 6 10 10 C 1.50699 * 119.99838 * 179.78958 * 9 8 7 11 11 O 1.42896 * 109.47222 * 244.98358 * 10 9 8 12 12 Si 1.86303 * 109.47272 * 4.98463 * 10 9 8 13 13 C 1.38230 * 119.99811 * 359.77548 * 9 8 7 14 14 C 1.38227 * 120.00516 * 0.02562 * 13 9 8 15 15 C 1.46506 * 119.99968 * 179.97438 * 2 1 3 16 16 H 1.08994 * 112.84680 * 168.80361 * 15 2 1 17 17 C 1.53779 * 113.61447 * 300.00282 * 15 2 1 18 18 C 1.53784 * 87.07972 * 89.11436 * 17 15 2 19 19 H 1.09003 * 113.61524 * 270.79773 * 18 17 15 20 20 C 1.50704 * 113.61285 * 139.98470 * 18 17 15 21 21 C 1.38234 * 120.00277 * 120.00111 * 20 18 17 22 22 C 1.38230 * 119.99885 * 180.02562 * 21 20 18 23 23 C 1.38235 * 120.00326 * 359.97438 * 22 21 20 24 24 C 1.38234 * 119.99814 * 359.97438 * 23 22 21 25 25 C 1.38235 * 119.99518 * 300.01793 * 20 18 17 26 26 C 1.53776 * 87.08431 * 25.43090 * 18 17 15 27 27 H 1.09001 * 109.47415 * 270.00793 * 1 2 3 28 28 H 1.09003 * 109.46922 * 30.00111 * 1 2 3 29 29 H 1.08997 * 109.47506 * 150.00288 * 1 2 3 30 30 H 1.09008 * 109.47101 * 300.00443 * 5 3 2 31 31 H 1.08998 * 109.47227 * 60.00288 * 5 3 2 32 32 H 1.08002 * 119.99844 * 0.02562 * 7 6 5 33 33 H 1.07997 * 120.00278 * 180.25907 * 8 7 6 34 34 H 1.09007 * 109.47052 * 124.98051 * 10 9 8 35 35 H 0.96695 * 114.00450 * 60.00133 * 11 10 9 36 36 H 1.48498 * 110.00131 * 179.97438 * 12 10 9 37 37 H 1.48510 * 109.99638 * 301.31704 * 12 10 9 38 38 H 1.08007 * 119.99521 * 180.02562 * 13 9 8 39 39 H 1.07997 * 120.00261 * 179.97438 * 14 13 9 40 40 H 1.09000 * 113.61454 * 334.57069 * 17 15 2 41 41 H 1.09000 * 113.68715 * 203.67120 * 17 15 2 42 42 H 1.07992 * 119.99701 * 359.97438 * 21 20 18 43 43 H 1.08000 * 120.00356 * 179.97438 * 22 21 20 44 44 H 1.08000 * 120.00616 * 179.70664 * 23 22 21 45 45 H 1.08001 * 120.00279 * 180.02562 * 24 23 22 46 46 H 1.07997 * 120.00423 * 359.97438 * 25 20 18 47 47 H 1.09001 * 113.61426 * 89.10953 * 26 18 17 48 48 H 1.08991 * 113.61590 * 220.01943 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3517 1.1671 -0.0005 5 6 1.3854 2.4722 -0.0006 6 6 2.3648 3.6176 -0.0011 7 6 2.8096 4.1472 1.1957 8 6 3.7112 5.1951 1.1953 9 6 4.1608 5.7195 -0.0022 10 6 5.1401 6.8650 -0.0027 11 8 4.5219 8.0200 -0.5734 12 14 5.6591 7.2391 1.7471 13 6 3.7122 5.1931 -1.1990 14 6 2.8137 4.1427 -1.1985 15 6 2.1975 -1.2688 0.0006 16 1 3.2624 -1.1427 -0.1945 17 6 1.8953 -2.1540 1.2212 18 6 0.7440 -2.7577 0.3996 19 1 -0.1987 -2.2217 0.5095 20 6 0.5940 -4.2471 0.5743 21 6 -0.5866 -4.7697 1.0680 22 6 -0.7239 -6.1358 1.2287 23 6 0.3192 -6.9793 0.8951 24 6 1.4995 -6.4567 0.4004 25 6 1.6373 -5.0905 0.2411 26 6 1.5373 -2.3615 -0.8568 27 1 -0.3634 0.0001 1.0276 28 1 -0.3633 0.8900 -0.5139 29 1 -0.3634 -0.8900 -0.5138 30 1 0.7590 2.5298 -0.8908 31 1 0.7585 2.5302 0.8891 32 1 2.4555 3.7399 2.1312 33 1 4.0619 5.6061 2.1304 34 1 6.0164 6.5935 -0.5914 35 1 3.7337 8.3188 -0.0997 36 1 6.6255 8.3665 1.7601 37 1 4.4693 7.5797 2.5679 38 1 4.0637 5.6027 -2.1345 39 1 2.4629 3.7317 -2.1336 40 1 1.5615 -1.5940 2.0947 41 1 2.6872 -2.8665 1.4522 42 1 -1.4014 -4.1107 1.3289 43 1 -1.6462 -6.5442 1.6148 44 1 0.2137 -8.0462 1.0251 45 1 2.3144 -7.1157 0.1394 46 1 2.5597 -4.6822 -0.1448 47 1 2.2321 -3.1303 -1.1949 48 1 0.9145 -1.9691 -1.6606 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14797354_12335836.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 03:48:31 Heat of formation + Delta-G solvation = 23.902398 kcal Electronic energy + Delta-G solvation = -28017.751812 eV Core-core repulsion = 24198.153687 eV Total energy + Delta-G solvation = -3819.598126 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 338.167 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.94906 -40.83068 -40.02314 -38.81733 -37.65034 -35.46744 -33.98568 -32.02442 -31.89975 -31.71966 -29.72963 -28.54060 -26.81608 -26.21218 -25.27819 -23.78474 -23.63883 -22.70051 -21.88464 -20.91731 -19.60190 -18.50782 -18.47355 -17.69711 -17.38816 -17.06789 -16.75469 -16.40859 -16.16775 -16.09844 -15.98417 -15.72054 -15.13510 -15.05201 -14.73823 -14.53868 -14.36052 -14.26776 -14.19549 -14.00219 -13.89496 -13.64560 -13.30199 -13.19601 -13.16761 -12.94930 -12.84384 -12.70103 -12.22133 -12.17062 -11.93712 -11.77368 -11.67399 -11.52622 -11.21736 -10.79575 -10.52629 -9.83848 -9.82059 -9.73878 -9.58995 -9.53745 -4.90198 0.27853 0.41659 0.48683 0.51190 1.33611 1.61135 1.62924 1.85152 1.99358 2.76376 2.81603 3.35243 3.42669 3.57660 3.59716 3.64444 3.70841 3.77605 3.87180 3.89586 3.95436 3.96942 4.05829 4.09052 4.14341 4.20621 4.22667 4.34492 4.37756 4.49952 4.51704 4.53286 4.59476 4.60774 4.65575 4.66977 4.72680 4.81558 4.86995 4.92738 5.02519 5.08720 5.10738 5.11205 5.13134 5.41594 5.53649 5.56760 5.58837 5.62216 5.62813 5.72148 6.03813 6.08710 6.30368 6.44739 7.16454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.601 5.601 3 C 0.518 3.482 4 O -0.523 6.523 5 C -0.101 4.101 6 C -0.063 4.063 7 C -0.100 4.100 8 C -0.116 4.116 9 C -0.117 4.117 10 C -0.075 4.075 11 O -0.530 6.530 12 Si 0.686 3.314 13 C -0.090 4.090 14 C -0.104 4.104 15 C 0.119 3.881 16 H 0.110 0.890 17 C -0.138 4.138 18 C -0.081 4.081 19 H 0.103 0.897 20 C -0.072 4.072 21 C -0.117 4.117 22 C -0.118 4.118 23 C -0.124 4.124 24 C -0.117 4.117 25 C -0.118 4.118 26 C -0.141 4.141 27 H 0.060 0.940 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.104 0.896 31 H 0.104 0.896 32 H 0.123 0.877 33 H 0.126 0.874 34 H 0.118 0.882 35 H 0.375 0.625 36 H -0.257 1.257 37 H -0.261 1.261 38 H 0.125 0.875 39 H 0.122 0.878 40 H 0.073 0.927 41 H 0.094 0.906 42 H 0.120 0.880 43 H 0.121 0.879 44 H 0.121 0.879 45 H 0.122 0.878 46 H 0.122 0.878 47 H 0.099 0.901 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.422 -3.044 1.025 5.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.335 5.335 3 C 0.306 3.694 4 O -0.398 6.398 5 C -0.141 4.141 6 C -0.064 4.064 7 C -0.118 4.118 8 C -0.134 4.134 9 C -0.117 4.117 10 C -0.185 4.185 11 O -0.336 6.336 12 Si 0.588 3.412 13 C -0.108 4.108 14 C -0.122 4.122 15 C 0.015 3.985 16 H 0.128 0.872 17 C -0.177 4.177 18 C -0.099 4.099 19 H 0.121 0.879 20 C -0.072 4.072 21 C -0.135 4.135 22 C -0.136 4.136 23 C -0.142 4.142 24 C -0.135 4.135 25 C -0.135 4.135 26 C -0.179 4.179 27 H 0.079 0.921 28 H 0.093 0.907 29 H 0.101 0.899 30 H 0.123 0.877 31 H 0.123 0.877 32 H 0.141 0.859 33 H 0.144 0.856 34 H 0.136 0.864 35 H 0.223 0.777 36 H -0.183 1.183 37 H -0.186 1.186 38 H 0.143 0.857 39 H 0.140 0.860 40 H 0.092 0.908 41 H 0.113 0.887 42 H 0.138 0.862 43 H 0.139 0.861 44 H 0.139 0.861 45 H 0.140 0.860 46 H 0.140 0.860 47 H 0.117 0.883 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.249 -2.488 1.243 4.277 hybrid contribution -1.221 0.323 -0.369 1.316 sum -4.471 -2.165 0.874 5.044 Atomic orbital electron populations 1.22077 0.79549 1.03888 1.02373 1.47546 1.06769 1.05197 1.73949 1.20567 0.88110 0.84803 0.75905 1.90751 1.13760 1.87074 1.48249 1.20727 0.97687 0.90310 1.05361 1.19291 0.97767 0.95651 0.93660 1.20896 0.97274 0.96142 0.97468 1.20984 0.97811 0.97452 0.97114 1.20250 0.99340 0.98381 0.93730 1.25024 0.97305 0.84675 1.11513 1.86600 1.46246 1.45008 1.55761 0.94836 0.82884 0.87859 0.75643 1.20960 0.96539 0.95544 0.97763 1.21008 0.97414 0.96375 0.97380 1.21918 0.97667 0.82358 0.96593 0.87210 1.23449 0.98191 0.98573 0.97441 1.21854 0.99041 0.91792 0.97178 0.87862 1.19708 0.94001 0.94712 0.98760 1.21054 0.97253 0.95312 0.99917 1.21182 0.98987 0.93610 0.99811 1.21200 0.93703 0.99936 0.99408 1.21186 0.97787 0.95276 0.99268 1.21025 0.98687 0.93349 1.00483 1.23493 0.99701 0.98090 0.96659 0.92119 0.90674 0.89904 0.87747 0.87735 0.85856 0.85613 0.86447 0.77745 1.18253 1.18556 0.85654 0.86029 0.90807 0.88725 0.86220 0.86053 0.86093 0.86012 0.86004 0.88317 0.90549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 -0.25 8.64 59.84 0.52 0.27 16 2 N -0.60 0.48 3.08 -173.00 -0.53 -0.05 16 3 C 0.52 0.67 7.67 -10.99 -0.08 0.58 16 4 O -0.52 -2.89 15.52 5.55 0.09 -2.81 16 5 C -0.10 0.14 4.38 -29.04 -0.13 0.01 16 6 C -0.06 -0.07 4.37 -104.62 -0.46 -0.52 16 7 C -0.10 -0.10 9.70 -39.59 -0.38 -0.49 16 8 C -0.12 -0.12 8.67 -39.58 -0.34 -0.46 16 9 C -0.12 -0.18 5.35 -104.62 -0.56 -0.74 16 10 C -0.08 -0.07 2.80 36.01 0.10 0.03 16 11 O -0.53 -1.09 12.83 -35.23 -0.45 -1.54 16 12 Si 0.69 0.04 29.88 -169.99 -5.08 -5.04 16 13 C -0.09 -0.17 9.69 -39.59 -0.38 -0.55 16 14 C -0.10 -0.15 9.70 -39.58 -0.38 -0.53 16 15 C 0.12 -0.05 4.46 -67.11 -0.30 -0.34 16 16 H 0.11 0.17 7.23 -51.93 -0.38 -0.21 16 17 C -0.14 0.14 7.21 -25.92 -0.19 -0.05 16 18 C -0.08 0.14 3.31 -90.96 -0.30 -0.16 16 19 H 0.10 -0.28 5.51 -51.93 -0.29 -0.57 16 20 C -0.07 0.01 5.29 -104.62 -0.55 -0.55 16 21 C -0.12 -0.01 9.71 -39.59 -0.38 -0.39 16 22 C -0.12 -0.03 10.05 -39.59 -0.40 -0.43 16 23 C -0.12 -0.05 10.05 -39.58 -0.40 -0.45 16 24 C -0.12 -0.04 10.05 -39.58 -0.40 -0.44 16 25 C -0.12 -0.01 8.61 -39.58 -0.34 -0.35 16 26 C -0.14 0.23 6.67 -25.92 -0.17 0.06 16 27 H 0.06 -0.27 8.14 -51.93 -0.42 -0.70 16 28 H 0.07 -0.39 6.44 -51.93 -0.33 -0.73 16 29 H 0.08 -0.35 4.83 -51.93 -0.25 -0.61 16 30 H 0.10 -0.35 7.35 -51.92 -0.38 -0.73 16 31 H 0.10 -0.35 8.05 -51.93 -0.42 -0.77 16 32 H 0.12 -0.08 8.06 -52.49 -0.42 -0.50 16 33 H 0.13 -0.07 4.85 -52.49 -0.25 -0.32 16 34 H 0.12 0.05 7.96 -51.93 -0.41 -0.37 16 35 H 0.38 -0.32 8.70 45.56 0.40 0.07 16 36 H -0.26 -0.82 7.11 56.52 0.40 -0.42 16 37 H -0.26 -0.43 7.01 56.52 0.40 -0.04 16 38 H 0.13 0.15 8.06 -52.48 -0.42 -0.27 16 39 H 0.12 0.00 8.06 -52.49 -0.42 -0.42 16 40 H 0.07 -0.04 8.14 -51.93 -0.42 -0.46 16 41 H 0.09 -0.08 7.72 -51.93 -0.40 -0.48 16 42 H 0.12 -0.19 8.05 -52.49 -0.42 -0.61 16 43 H 0.12 -0.16 8.06 -52.49 -0.42 -0.58 16 44 H 0.12 -0.13 8.06 -52.49 -0.42 -0.56 16 45 H 0.12 -0.14 8.06 -52.49 -0.42 -0.57 16 46 H 0.12 -0.15 6.66 -52.49 -0.35 -0.50 16 47 H 0.10 -0.18 6.31 -51.93 -0.33 -0.50 16 48 H 0.08 -0.14 7.36 -51.93 -0.38 -0.52 16 LS Contribution 383.45 15.07 5.78 5.78 Total: 0.00 -7.99 383.45 -12.52 -20.51 By element: Atomic # 1 Polarization: -4.57 SS G_CDS: -6.79 Total: -11.35 kcal Atomic # 6 Polarization: 0.05 SS G_CDS: -5.54 Total: -5.49 kcal Atomic # 7 Polarization: 0.48 SS G_CDS: -0.53 Total: -0.05 kcal Atomic # 8 Polarization: -3.98 SS G_CDS: -0.37 Total: -4.35 kcal Atomic # 14 Polarization: 0.04 SS G_CDS: -5.08 Total: -5.04 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -7.99 -12.52 -20.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14797354_12335836.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.412 kcal (2) G-P(sol) polarization free energy of solvation -7.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds