Wall clock time and date at job start Sun Mar 7 2021 03:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34778 * 119.99750 * 2 1 4 4 O 1.21554 * 119.99635 * 187.12198 * 3 2 1 5 5 C 1.47835 * 120.00108 * 7.12709 * 3 2 1 6 6 C 1.39518 * 120.56037 * 20.29196 * 5 3 2 7 7 N 1.31692 * 120.56563 * 179.77599 * 6 5 3 8 8 C 1.31929 * 121.87840 * 0.49425 * 7 6 5 9 9 C 1.38346 * 121.08270 * 359.77064 * 8 7 6 10 10 C 1.50701 * 120.35237 * 180.02562 * 9 8 7 11 11 O 1.42892 * 109.47162 * 119.97569 * 10 9 8 12 12 Si 1.86305 * 109.46903 * 359.97382 * 10 9 8 13 13 C 1.38363 * 119.30184 * 359.97438 * 9 8 7 14 14 C 1.46505 * 120.00015 * 180.02562 * 2 1 3 15 15 H 1.08995 * 112.90729 * 168.75091 * 14 2 1 16 16 C 1.53783 * 113.61289 * 300.00157 * 14 2 1 17 17 C 1.53780 * 87.17274 * 89.15958 * 16 14 2 18 18 H 1.09001 * 113.61203 * 270.83920 * 17 16 14 19 19 C 1.50694 * 113.61497 * 139.94119 * 17 16 14 20 20 C 1.38239 * 119.99697 * 299.72316 * 19 17 16 21 21 C 1.38240 * 119.99438 * 179.78701 * 20 19 17 22 22 C 1.38230 * 120.00698 * 0.44138 * 21 20 19 23 23 C 1.38240 * 119.99517 * 359.81551 * 22 21 20 24 24 C 1.38233 * 120.00258 * 119.99654 * 19 17 16 25 25 C 1.53776 * 87.08388 * 25.38717 * 17 16 14 26 26 H 1.08994 * 109.47383 * 267.73050 * 1 2 3 27 27 H 1.08995 * 109.47456 * 27.73869 * 1 2 3 28 28 H 1.09005 * 109.46764 * 147.73255 * 1 2 3 29 29 H 1.08000 * 119.71575 * 0.02562 * 6 5 3 30 30 H 1.07997 * 119.45642 * 179.74912 * 8 7 6 31 31 H 1.09000 * 109.46666 * 239.98023 * 10 9 8 32 32 H 0.96706 * 113.99868 * 179.97438 * 11 10 9 33 33 H 1.48503 * 109.99993 * 298.68669 * 12 10 9 34 34 H 1.48496 * 109.99733 * 60.00143 * 12 10 9 35 35 H 1.07996 * 120.85834 * 180.02562 * 13 9 8 36 36 H 1.09003 * 113.60962 * 334.56655 * 16 14 2 37 37 H 1.09002 * 113.61022 * 203.75249 * 16 14 2 38 38 H 1.07993 * 120.00049 * 0.02562 * 20 19 17 39 39 H 1.08006 * 119.99474 * 180.27473 * 21 20 19 40 40 H 1.08000 * 120.00278 * 179.83204 * 22 21 20 41 41 H 1.08000 * 119.99738 * 180.02562 * 23 22 21 42 42 H 1.08000 * 120.00269 * 359.97438 * 24 19 17 43 43 H 1.09004 * 113.61119 * 89.11381 * 25 17 16 44 44 H 1.08998 * 113.61843 * 219.93736 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3473 1.1713 -0.1305 5 6 1.4082 2.4426 0.1588 6 6 0.1303 2.4631 0.7184 7 7 -0.5189 3.5996 0.8640 8 6 -0.0007 4.7516 0.4835 9 6 1.2590 4.8153 -0.0848 10 6 1.8353 6.1403 -0.5129 11 8 3.0478 6.3858 0.2022 12 14 0.6123 7.4970 -0.1460 13 6 1.9848 3.6496 -0.2551 14 6 2.1975 -1.2688 -0.0006 15 1 3.2624 -1.1437 -0.1964 16 6 1.8953 -2.1551 1.2193 17 6 0.7442 -2.7604 0.3987 18 1 -0.1989 -2.2250 0.5086 19 6 0.5968 -4.2499 0.5731 20 6 1.6389 -5.0921 0.2329 21 6 1.5052 -6.4582 0.3970 22 6 0.3262 -6.9828 0.8926 23 6 -0.7178 -6.1410 1.2279 24 6 -0.5825 -4.7746 1.0679 25 6 1.5356 -2.3626 -0.8583 26 1 -0.3634 -0.0407 1.0268 27 1 -0.3634 0.9095 -0.4783 28 1 -0.3633 -0.8690 -0.5487 29 1 -0.3288 1.5394 1.0386 30 1 -0.5693 5.6599 0.6177 31 1 2.0426 6.1176 -1.5828 32 1 3.4750 7.2234 -0.0238 33 1 -0.6417 7.2702 -0.9085 34 1 0.3212 7.5382 1.3095 35 1 2.9706 3.6702 -0.6956 36 1 1.5616 -1.5957 2.0933 37 1 2.6887 -2.8663 1.4495 38 1 2.5587 -4.6825 -0.1574 39 1 2.3210 -7.1159 0.1353 40 1 0.2209 -8.0503 1.0183 41 1 -1.6387 -6.5508 1.6155 42 1 -1.3982 -4.1169 1.3299 43 1 2.2313 -3.1302 -1.1974 44 1 0.9113 -1.9722 -1.6620 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14797354_13287814.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 03:51:53 Heat of formation + Delta-G solvation = 64.887690 kcal Electronic energy + Delta-G solvation = -26717.965915 eV Core-core repulsion = 22990.256753 eV Total energy + Delta-G solvation = -3727.709162 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.45467 -41.40934 -40.16966 -38.86756 -37.90558 -35.93634 -33.98741 -33.26674 -31.89199 -31.57822 -28.95892 -27.21839 -26.87024 -26.61755 -25.24432 -23.70162 -23.50930 -22.36691 -21.33617 -19.87464 -18.90834 -18.61058 -18.49749 -17.92828 -17.75515 -17.23152 -16.63986 -16.31712 -16.13999 -15.83670 -15.49446 -15.33205 -15.10198 -14.97951 -14.61860 -14.49774 -14.35924 -14.26618 -14.11167 -13.96839 -13.76873 -13.49713 -13.09647 -12.81706 -12.73102 -12.54596 -12.19611 -12.13224 -11.80387 -11.68662 -11.35424 -11.22383 -11.17791 -10.82849 -10.58826 -10.17781 -9.87977 -9.80447 -9.53762 -4.97726 -0.73374 -0.16762 0.43483 0.50843 1.21373 1.44093 1.61459 1.63285 1.91469 2.40030 2.83528 2.92377 3.11784 3.28549 3.40904 3.44703 3.55095 3.62874 3.68136 3.71376 3.91492 3.93886 4.02608 4.03743 4.15410 4.15999 4.22419 4.30362 4.38261 4.42522 4.53562 4.56636 4.63324 4.67398 4.71097 4.72073 4.74950 4.81186 4.90813 4.96350 5.11678 5.13678 5.17411 5.18364 5.47399 5.59440 5.65268 5.74489 6.05543 6.13312 6.45939 6.80553 6.83990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.583 5.583 3 C 0.566 3.434 4 O -0.569 6.569 5 C -0.194 4.194 6 C 0.120 3.880 7 N -0.494 5.494 8 C 0.108 3.892 9 C -0.142 4.142 10 C -0.081 4.081 11 O -0.566 6.566 12 Si 0.782 3.218 13 C 0.001 3.999 14 C 0.111 3.889 15 H 0.091 0.909 16 C -0.134 4.134 17 C -0.070 4.070 18 H 0.120 0.880 19 C -0.078 4.078 20 C -0.128 4.128 21 C -0.131 4.131 22 C -0.138 4.138 23 C -0.131 4.131 24 C -0.126 4.126 25 C -0.133 4.133 26 H 0.092 0.908 27 H 0.087 0.913 28 H 0.105 0.895 29 H 0.213 0.787 30 H 0.159 0.841 31 H 0.102 0.898 32 H 0.407 0.593 33 H -0.276 1.276 34 H -0.292 1.292 35 H 0.145 0.855 36 H 0.074 0.926 37 H 0.095 0.905 38 H 0.131 0.869 39 H 0.131 0.869 40 H 0.131 0.869 41 H 0.133 0.867 42 H 0.136 0.864 43 H 0.103 0.897 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.047 1.438 -2.551 4.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 N -0.314 5.314 3 C 0.355 3.645 4 O -0.449 6.449 5 C -0.199 4.199 6 C -0.037 4.037 7 N -0.202 5.202 8 C -0.048 4.048 9 C -0.144 4.144 10 C -0.191 4.191 11 O -0.377 6.377 12 Si 0.686 3.314 13 C -0.025 4.025 14 C 0.007 3.993 15 H 0.109 0.891 16 C -0.172 4.172 17 C -0.088 4.088 18 H 0.138 0.862 19 C -0.078 4.078 20 C -0.146 4.146 21 C -0.149 4.149 22 C -0.156 4.156 23 C -0.149 4.149 24 C -0.144 4.144 25 C -0.170 4.170 26 H 0.110 0.890 27 H 0.106 0.894 28 H 0.123 0.877 29 H 0.228 0.772 30 H 0.175 0.825 31 H 0.120 0.880 32 H 0.259 0.741 33 H -0.203 1.203 34 H -0.219 1.219 35 H 0.163 0.837 36 H 0.093 0.907 37 H 0.113 0.887 38 H 0.149 0.851 39 H 0.149 0.851 40 H 0.149 0.851 41 H 0.151 0.849 42 H 0.154 0.846 43 H 0.121 0.879 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -4.185 1.045 -1.684 4.631 hybrid contribution 1.145 -0.705 -0.330 1.385 sum -3.040 0.341 -2.013 3.662 Atomic orbital electron populations 1.22922 0.77759 1.05546 1.03857 1.47377 1.07940 1.04362 1.71697 1.18191 0.86397 0.83866 0.76072 1.90786 1.15524 1.87479 1.51123 1.21016 0.97713 0.94335 1.06794 1.24624 0.89537 0.98123 0.91396 1.67843 1.36546 0.98601 1.17202 1.22921 0.92848 0.96731 0.92255 1.20708 0.95692 0.96324 1.01668 1.24864 0.95558 0.99043 0.99596 1.86446 1.37943 1.46545 1.66716 0.93874 0.75937 0.83946 0.77685 1.21669 0.98972 0.90139 0.91743 1.22053 0.96883 0.82070 0.98297 0.89052 1.23428 0.98688 0.98146 0.96944 1.21830 0.99374 0.91164 0.96444 0.86202 1.19857 0.94008 0.95279 0.98703 1.21234 0.99282 0.93495 1.00553 1.21418 0.98263 0.95756 0.99487 1.21442 0.93912 1.00696 0.99587 1.21445 0.99513 0.93989 0.99920 1.21332 0.97814 0.95583 0.99700 1.23492 0.99630 0.97143 0.96774 0.88996 0.89437 0.87681 0.77154 0.82480 0.88047 0.74061 1.20292 1.21925 0.83693 0.90744 0.88662 0.85124 0.85077 0.85148 0.84868 0.84565 0.87893 0.89818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 -0.28 6.99 127.77 0.89 0.62 16 2 N -0.58 -0.28 3.08 -822.73 -2.54 -2.82 16 3 C 0.57 4.23 7.53 86.78 0.65 4.88 16 4 O -0.57 -8.84 16.09 -3.88 -0.06 -8.90 16 5 C -0.19 -1.11 5.57 -20.00 -0.11 -1.22 16 6 C 0.12 0.30 8.83 85.02 0.75 1.05 16 7 N -0.49 -3.03 10.35 -194.76 -2.02 -5.04 16 8 C 0.11 0.62 9.84 84.70 0.83 1.45 16 9 C -0.14 -0.68 5.42 -19.81 -0.11 -0.79 16 10 C -0.08 0.12 2.82 71.24 0.20 0.32 16 11 O -0.57 0.14 12.75 -148.98 -1.90 -1.76 16 12 Si 0.78 -3.22 29.82 68.60 2.05 -1.17 16 13 C 0.00 0.01 9.31 22.73 0.21 0.22 16 14 C 0.11 0.02 4.49 45.58 0.20 0.22 16 15 H 0.09 0.45 7.21 -2.39 -0.02 0.43 16 16 C -0.13 0.28 7.20 31.12 0.22 0.50 16 17 C -0.07 0.30 3.32 -11.02 -0.04 0.27 16 18 H 0.12 -0.93 5.55 -2.39 -0.01 -0.94 16 19 C -0.08 0.06 5.29 -19.87 -0.11 -0.04 16 20 C -0.13 -0.02 8.62 22.27 0.19 0.17 16 21 C -0.13 -0.12 10.05 22.27 0.22 0.10 16 22 C -0.14 -0.14 10.05 22.27 0.22 0.08 16 23 C -0.13 -0.06 10.05 22.27 0.22 0.17 16 24 C -0.13 0.07 9.71 22.27 0.22 0.28 16 25 C -0.13 0.48 6.67 31.18 0.21 0.69 16 26 H 0.09 -0.98 6.91 -2.39 -0.02 -1.00 16 27 H 0.09 -0.59 5.40 -2.39 -0.01 -0.60 16 28 H 0.10 -1.04 4.97 -2.38 -0.01 -1.05 16 29 H 0.21 -0.92 4.03 -2.91 -0.01 -0.93 16 30 H 0.16 0.56 4.88 -2.91 -0.01 0.54 16 31 H 0.10 -0.59 7.96 -2.39 -0.02 -0.60 16 32 H 0.41 -4.55 8.74 -74.05 -0.65 -5.20 16 33 H -0.28 -0.04 7.11 99.48 0.71 0.67 16 34 H -0.29 -1.00 7.11 99.48 0.71 -0.29 16 35 H 0.15 1.10 7.87 -2.91 -0.02 1.08 16 36 H 0.07 -0.12 8.14 -2.39 -0.02 -0.14 16 37 H 0.09 -0.15 7.73 -2.39 -0.02 -0.16 16 38 H 0.13 -0.32 6.64 -2.91 -0.02 -0.34 16 39 H 0.13 -0.26 8.06 -2.91 -0.02 -0.28 16 40 H 0.13 -0.25 8.06 -2.91 -0.02 -0.27 16 41 H 0.13 -0.38 8.06 -2.91 -0.02 -0.40 16 42 H 0.14 -0.62 8.06 -2.91 -0.02 -0.64 16 43 H 0.10 -0.40 6.30 -2.39 -0.02 -0.41 16 44 H 0.08 -0.37 7.33 -2.39 -0.02 -0.39 16 Total: 0.00 -22.52 349.95 0.87 -21.64 By element: Atomic # 1 Polarization: -11.37 SS G_CDS: 0.44 Total: -10.93 kcal Atomic # 6 Polarization: 4.07 SS G_CDS: 4.90 Total: 8.97 kcal Atomic # 7 Polarization: -3.31 SS G_CDS: -4.55 Total: -7.86 kcal Atomic # 8 Polarization: -8.69 SS G_CDS: -1.96 Total: -10.66 kcal Atomic # 14 Polarization: -3.22 SS G_CDS: 2.05 Total: -1.17 kcal Total: -22.52 0.87 -21.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14797354_13287814.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.531 kcal (2) G-P(sol) polarization free energy of solvation -22.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.644 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds