Wall clock time and date at job start Sun Mar 7 2021 03:51:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36413 * 125.79995 * 2 1 4 4 C 1.47385 * 127.19298 * 0.02562 * 3 2 1 5 5 O 1.21611 * 119.99788 * 34.81583 * 4 3 2 6 6 N 1.34777 * 119.99910 * 214.81345 * 4 3 2 7 7 C 1.46495 * 120.00158 * 355.93766 * 6 4 3 8 8 C 1.46504 * 119.99414 * 175.93438 * 6 4 3 9 9 H 1.09000 * 112.85200 * 348.80429 * 8 6 4 10 10 C 1.53782 * 113.61275 * 120.00392 * 8 6 4 11 11 C 1.53779 * 87.17501 * 89.15468 * 10 8 6 12 12 H 1.09008 * 113.61297 * 270.93082 * 11 10 8 13 13 C 1.50698 * 113.61742 * 140.02411 * 11 10 8 14 14 C 1.38231 * 119.99887 * 299.72945 * 13 11 10 15 15 C 1.38237 * 120.00565 * 179.78866 * 14 13 11 16 16 C 1.38241 * 119.99448 * 0.43889 * 15 14 13 17 17 C 1.38238 * 119.99603 * 359.81112 * 16 15 14 18 18 C 1.38226 * 120.00340 * 120.00184 * 13 11 10 19 19 C 1.53776 * 113.68907 * 217.53581 * 8 6 4 20 20 C 1.47015 * 105.61806 * 179.75462 * 3 2 1 21 21 C 1.34181 * 105.95525 * 0.22794 * 20 3 2 22 22 C 1.50696 * 125.43948 * 179.97438 * 21 20 3 23 23 O 1.42901 * 109.47272 * 299.99886 * 22 21 20 24 24 Si 1.86309 * 109.46932 * 180.02562 * 22 21 20 25 25 O 1.33647 * 125.80622 * 180.14723 * 2 1 3 26 26 H 1.08998 * 109.47078 * 89.99930 * 1 2 3 27 27 H 1.09000 * 109.46542 * 209.99534 * 1 2 3 28 28 H 1.09001 * 109.47143 * 329.99663 * 1 2 3 29 29 H 1.09001 * 109.47099 * 274.17135 * 7 6 4 30 30 H 1.08999 * 109.47400 * 34.17208 * 7 6 4 31 31 H 1.08998 * 109.46640 * 154.17427 * 7 6 4 32 32 H 1.08995 * 113.61451 * 203.74651 * 10 8 6 33 33 H 1.09004 * 113.61233 * 334.56513 * 10 8 6 34 34 H 1.08010 * 120.00199 * 359.97438 * 14 13 11 35 35 H 1.07995 * 120.00514 * 180.27764 * 15 14 13 36 36 H 1.07993 * 120.00225 * 179.83487 * 16 15 14 37 37 H 1.08007 * 119.99538 * 179.97438 * 17 16 15 38 38 H 1.08003 * 120.00177 * 359.97438 * 18 13 11 39 39 H 1.09003 * 113.61470 * 25.42717 * 19 8 6 40 40 H 1.08999 * 113.61684 * 156.24154 * 19 8 6 41 41 H 1.08000 * 127.02662 * 180.20886 * 20 3 2 42 42 H 1.08996 * 109.47376 * 60.00145 * 22 21 20 43 43 H 0.96702 * 113.99989 * 300.00347 * 23 22 21 44 44 H 1.48496 * 109.99513 * 180.02562 * 24 22 21 45 45 H 1.48501 * 109.99773 * 301.31663 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.1064 0.0000 4 6 1.8739 2.5158 0.0005 5 8 0.8694 2.8442 0.6023 6 7 2.5930 3.4407 -0.6659 7 6 3.8500 3.0623 -1.3160 8 6 2.1173 4.8243 -0.7400 9 1 1.0908 4.9384 -0.3914 10 6 3.0924 5.8445 -0.1290 11 6 3.7439 5.9399 -1.5187 12 1 4.5423 5.2149 -1.6773 13 6 4.1391 7.3418 -1.9053 14 6 3.1782 8.3316 -1.9923 15 6 3.5413 9.6187 -2.3427 16 6 4.8642 9.9137 -2.6148 17 6 5.8243 8.9225 -2.5328 18 6 5.4617 7.6366 -2.1783 19 6 2.3856 5.4981 -2.0960 20 6 3.6849 0.5992 0.0061 21 6 3.5860 -0.7390 0.0039 22 6 4.7460 -1.7009 0.0078 23 8 5.5478 -1.4849 -1.1552 24 14 4.1028 -3.4494 0.0020 25 8 2.2889 -1.0839 -0.0028 26 1 -0.3633 0.0000 -1.0276 27 1 -0.3632 -0.8901 0.5138 28 1 -0.3633 0.8900 0.5139 29 1 4.6644 3.1200 -0.5938 30 1 3.7712 2.0430 -1.6940 31 1 4.0498 3.7425 -2.1440 32 1 2.6125 6.7688 0.1926 33 1 3.7475 5.4206 0.6321 34 1 2.1440 8.1003 -1.7837 35 1 2.7912 10.3930 -2.4063 36 1 5.1475 10.9185 -2.8911 37 1 6.8578 9.1529 -2.7458 38 1 6.2119 6.8623 -2.1142 39 1 2.4711 4.7943 -2.9240 40 1 1.7116 6.3267 -2.3129 41 1 4.5927 1.1841 0.0109 42 1 5.3498 -1.5384 0.9007 43 1 5.0742 -1.6124 -1.9886 44 1 5.2372 -4.4077 0.0064 45 1 3.2412 -3.6775 1.1898 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14797354_13308374.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 03:51:57 Heat of formation + Delta-G solvation = 25.528334 kcal Electronic energy + Delta-G solvation = -27734.426422 eV Core-core repulsion = 23879.980370 eV Total energy + Delta-G solvation = -3854.446053 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 328.151 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.80873 -41.81526 -40.22875 -38.82037 -37.98888 -35.65720 -34.01939 -33.12798 -31.93209 -31.63395 -29.41651 -28.52894 -26.77906 -26.54554 -25.24702 -24.26153 -23.49737 -22.65304 -21.88510 -20.26097 -19.63715 -18.74881 -18.30173 -17.76057 -17.70353 -17.20168 -16.83318 -16.43663 -16.26898 -16.06908 -15.76005 -15.61718 -15.00589 -14.99225 -14.59510 -14.31484 -14.25460 -14.20212 -14.07019 -13.93642 -13.82782 -13.80858 -13.49587 -13.06117 -12.90987 -12.88262 -12.76811 -12.67675 -12.25641 -12.10364 -11.72028 -11.63785 -11.21741 -11.14877 -10.83075 -10.56313 -9.84044 -9.79746 -9.57868 -9.49441 -5.00893 0.25722 0.43938 0.51124 0.83825 1.18145 1.39407 1.73009 1.82594 1.92225 2.00995 2.84028 3.22274 3.37630 3.46737 3.58596 3.65635 3.70449 3.79072 3.93746 4.02238 4.11406 4.14379 4.17249 4.22309 4.30533 4.31272 4.41282 4.51446 4.56274 4.58409 4.59560 4.63697 4.67906 4.72566 4.73608 4.82230 4.85682 4.93140 4.96981 5.11154 5.14297 5.18194 5.18768 5.20267 5.54878 5.59966 5.65441 5.75666 5.89549 6.13586 6.24359 6.65042 7.00366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.079 3.921 3 C -0.264 4.264 4 C 0.590 3.410 5 O -0.575 6.575 6 N -0.585 5.585 7 C 0.059 3.941 8 C 0.113 3.887 9 H 0.091 0.909 10 C -0.135 4.135 11 C -0.071 4.071 12 H 0.116 0.884 13 C -0.079 4.079 14 C -0.127 4.127 15 C -0.130 4.130 16 C -0.138 4.138 17 C -0.130 4.130 18 C -0.128 4.128 19 C -0.130 4.130 20 C -0.148 4.148 21 C -0.058 4.058 22 C -0.022 4.022 23 O -0.537 6.537 24 Si 0.778 3.222 25 O -0.170 6.170 26 H 0.106 0.894 27 H 0.099 0.901 28 H 0.091 0.909 29 H 0.068 0.932 30 H 0.085 0.915 31 H 0.098 0.902 32 H 0.094 0.906 33 H 0.066 0.934 34 H 0.132 0.868 35 H 0.133 0.867 36 H 0.132 0.868 37 H 0.134 0.866 38 H 0.134 0.866 39 H 0.083 0.917 40 H 0.104 0.896 41 H 0.174 0.826 42 H 0.136 0.864 43 H 0.401 0.599 44 H -0.279 1.279 45 H -0.298 1.298 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.714 -1.021 -5.253 5.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.026 3.974 3 C -0.268 4.268 4 C 0.380 3.620 5 O -0.457 6.457 6 N -0.315 5.315 7 C -0.082 4.082 8 C 0.009 3.991 9 H 0.109 0.891 10 C -0.173 4.173 11 C -0.089 4.089 12 H 0.134 0.866 13 C -0.079 4.079 14 C -0.145 4.145 15 C -0.148 4.148 16 C -0.156 4.156 17 C -0.148 4.148 18 C -0.146 4.146 19 C -0.168 4.168 20 C -0.167 4.167 21 C -0.106 4.106 22 C -0.133 4.133 23 O -0.345 6.345 24 Si 0.683 3.317 25 O -0.067 6.067 26 H 0.125 0.875 27 H 0.117 0.883 28 H 0.110 0.890 29 H 0.086 0.914 30 H 0.103 0.897 31 H 0.116 0.884 32 H 0.113 0.887 33 H 0.085 0.915 34 H 0.149 0.851 35 H 0.151 0.849 36 H 0.150 0.850 37 H 0.152 0.848 38 H 0.152 0.848 39 H 0.101 0.899 40 H 0.123 0.877 41 H 0.192 0.808 42 H 0.153 0.847 43 H 0.251 0.749 44 H -0.206 1.206 45 H -0.226 1.226 Dipole moment (debyes) X Y Z Total from point charges 1.555 -1.783 -4.110 4.742 hybrid contribution 0.258 0.947 0.641 1.172 sum 1.813 -0.836 -3.469 4.003 Atomic orbital electron populations 1.20709 0.82688 1.05553 1.05510 1.23103 0.94678 0.82839 0.96779 1.21095 0.94545 0.93161 1.18013 1.17512 0.82196 0.84525 0.77768 1.90755 1.27974 1.81848 1.45084 1.47366 1.23733 1.08056 1.52391 1.22474 0.84163 1.02969 0.98640 1.21961 0.98742 0.80054 0.98361 0.89082 1.23411 0.98174 0.99243 0.96521 1.21885 0.97693 0.93406 0.95899 0.86585 1.19857 0.93537 0.95383 0.99091 1.21232 0.99964 0.92980 1.00327 1.21426 0.96816 0.97149 0.99434 1.21448 0.93544 1.00158 1.00445 1.21440 1.00319 0.93412 0.99655 1.21316 0.96073 0.97290 0.99885 1.23496 0.96694 1.00563 0.96067 1.22868 0.96205 0.93476 1.04197 1.22933 0.82914 0.95891 1.08877 1.24420 0.89210 1.06881 0.92759 1.86538 1.38529 1.93314 1.16122 0.93324 0.78752 0.72396 0.87189 1.83663 1.16712 1.34838 1.71522 0.87522 0.88267 0.89032 0.91374 0.89694 0.88412 0.88747 0.91507 0.85056 0.84937 0.85041 0.84837 0.84809 0.89860 0.87742 0.80819 0.84681 0.74851 1.20567 1.22570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 0.01 10.21 71.24 0.73 0.73 16 2 C 0.08 0.28 7.37 25.26 0.19 0.47 16 3 C -0.26 -1.26 5.53 -18.99 -0.11 -1.37 16 4 C 0.59 4.61 7.50 86.65 0.65 5.26 16 5 O -0.58 -8.45 14.95 -4.07 -0.06 -8.51 16 6 N -0.58 -1.20 3.08 -823.58 -2.54 -3.74 16 7 C 0.06 -0.26 7.60 127.77 0.97 0.72 16 8 C 0.11 0.15 4.44 45.52 0.20 0.36 16 9 H 0.09 0.50 7.26 -2.39 -0.02 0.48 16 10 C -0.13 0.02 7.20 31.12 0.22 0.25 16 11 C -0.07 0.19 3.32 -10.92 -0.04 0.16 16 12 H 0.12 -0.60 5.43 -2.38 -0.01 -0.62 16 13 C -0.08 -0.02 5.29 -19.87 -0.11 -0.12 16 14 C -0.13 -0.08 8.63 22.27 0.19 0.11 16 15 C -0.13 -0.15 10.05 22.27 0.22 0.07 16 16 C -0.14 -0.18 10.05 22.27 0.22 0.05 16 17 C -0.13 -0.12 10.05 22.27 0.22 0.10 16 18 C -0.13 -0.05 9.71 22.27 0.22 0.16 16 19 C -0.13 0.36 6.67 31.21 0.21 0.57 16 20 C -0.15 -0.10 8.63 23.65 0.20 0.10 16 21 C -0.06 0.00 6.20 24.76 0.15 0.16 16 22 C -0.02 0.07 2.98 71.23 0.21 0.28 16 23 O -0.54 2.52 12.86 -148.98 -1.92 0.60 16 24 Si 0.78 -2.23 32.08 68.60 2.20 -0.03 16 25 O -0.17 -0.35 8.89 4.51 0.04 -0.31 16 26 H 0.11 -0.39 8.14 -2.39 -0.02 -0.41 16 27 H 0.10 -0.32 8.14 -2.39 -0.02 -0.34 16 28 H 0.09 0.38 6.55 -2.39 -0.02 0.36 16 29 H 0.07 -0.40 7.42 -2.39 -0.02 -0.41 16 30 H 0.08 -0.40 5.74 -2.39 -0.01 -0.42 16 31 H 0.10 -0.70 4.59 -2.39 -0.01 -0.71 16 32 H 0.09 0.00 7.73 -2.39 -0.02 -0.02 16 33 H 0.07 0.09 8.14 -2.38 -0.02 0.07 16 34 H 0.13 -0.27 6.65 -2.91 -0.02 -0.29 16 35 H 0.13 -0.26 8.06 -2.91 -0.02 -0.29 16 36 H 0.13 -0.24 8.06 -2.91 -0.02 -0.27 16 37 H 0.13 -0.32 8.06 -2.91 -0.02 -0.35 16 38 H 0.13 -0.43 8.06 -2.91 -0.02 -0.45 16 39 H 0.08 -0.30 7.44 -2.39 -0.02 -0.32 16 40 H 0.10 -0.37 6.32 -2.39 -0.02 -0.38 16 41 H 0.17 -0.48 6.44 -2.91 -0.02 -0.50 16 42 H 0.14 -0.51 7.96 -2.39 -0.02 -0.52 16 43 H 0.40 -5.01 8.70 -74.06 -0.64 -5.66 16 44 H -0.28 -0.71 7.11 99.48 0.71 0.00 16 45 H -0.30 -1.43 7.11 99.48 0.71 -0.72 16 Total: 0.00 -18.40 362.38 2.72 -15.68 By element: Atomic # 1 Polarization: -12.18 SS G_CDS: 0.42 Total: -11.76 kcal Atomic # 6 Polarization: 3.49 SS G_CDS: 4.57 Total: 8.06 kcal Atomic # 7 Polarization: -1.20 SS G_CDS: -2.54 Total: -3.74 kcal Atomic # 8 Polarization: -6.28 SS G_CDS: -1.94 Total: -8.22 kcal Atomic # 14 Polarization: -2.23 SS G_CDS: 2.20 Total: -0.03 kcal Total: -18.40 2.72 -15.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14797354_13308374.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.209 kcal (2) G-P(sol) polarization free energy of solvation -18.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.681 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds