Wall clock time and date at job start Sun Mar 7 2021 03:52:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34780 * 120.00213 * 2 1 4 4 O 1.21613 * 120.00410 * 183.43698 * 3 2 1 5 5 C 1.47380 * 119.99654 * 3.43520 * 3 2 1 6 6 C 1.36413 * 127.19206 * 352.21823 * 5 3 2 7 7 O 1.33662 * 108.39787 * 179.89549 * 6 5 3 8 8 C 1.34218 * 110.90300 * 0.39217 * 7 6 5 9 9 C 1.50699 * 125.43384 * 179.75551 * 8 7 6 10 10 O 1.42903 * 109.46868 * 120.00440 * 9 8 7 11 11 Si 1.86294 * 109.47309 * 0.02562 * 9 8 7 12 12 C 1.34174 * 109.12814 * 359.76243 * 8 7 6 13 13 C 1.46501 * 120.00238 * 179.97438 * 2 1 3 14 14 H 1.08993 * 112.91485 * 199.61490 * 13 2 1 15 15 C 1.53782 * 113.61287 * 330.86914 * 13 2 1 16 16 C 1.53778 * 87.08245 * 89.11411 * 15 13 2 17 17 H 1.09004 * 113.61061 * 270.87910 * 16 15 13 18 18 C 1.50700 * 113.61475 * 139.98301 * 16 15 13 19 19 C 1.38235 * 120.00018 * 322.22684 * 18 16 15 20 20 C 1.38232 * 119.99715 * 179.81443 * 19 18 16 21 21 C 1.38229 * 120.00376 * 0.41284 * 20 19 18 22 22 C 1.38240 * 119.99840 * 359.81934 * 21 20 19 23 23 C 1.38224 * 119.99952 * 359.97438 * 22 21 20 24 24 C 1.53777 * 87.08501 * 25.43131 * 16 15 13 25 25 H 1.09000 * 109.47312 * 186.20564 * 1 2 3 26 26 H 1.09003 * 109.46579 * 306.20283 * 1 2 3 27 27 H 1.08995 * 109.47184 * 66.20535 * 1 2 3 28 28 H 1.08002 * 125.80540 * 0.02562 * 6 5 3 29 29 H 1.08995 * 109.47050 * 240.00007 * 9 8 7 30 30 H 0.96703 * 114.00167 * 300.00124 * 10 9 8 31 31 H 1.48503 * 110.00205 * 179.97438 * 11 9 8 32 32 H 1.48498 * 110.00046 * 301.31708 * 11 9 8 33 33 H 1.08000 * 127.02861 * 180.02562 * 12 8 7 34 34 H 1.08998 * 113.61323 * 334.56473 * 15 13 2 35 35 H 1.09000 * 113.69091 * 203.67152 * 15 13 2 36 36 H 1.07995 * 119.99709 * 0.02562 * 19 18 16 37 37 H 1.08005 * 119.99865 * 180.21273 * 20 19 18 38 38 H 1.08004 * 120.00214 * 179.78928 * 21 20 19 39 39 H 1.08002 * 119.99963 * 179.97438 * 22 21 20 40 40 H 1.08004 * 120.00019 * 179.97438 * 23 22 21 41 41 H 1.09000 * 113.61458 * 89.11496 * 24 16 15 42 42 H 1.08991 * 113.61727 * 220.02324 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3534 1.1682 -0.0631 5 6 1.4040 2.4424 0.0765 6 6 0.0536 2.6214 0.0047 7 8 -0.2054 3.9278 0.1180 8 6 0.9297 4.6309 0.2551 9 6 1.0176 6.1280 0.4027 10 8 1.6449 6.4480 1.6462 11 14 -0.6962 6.8574 0.3666 12 6 1.9735 3.7880 0.2395 13 6 2.1976 -1.2687 0.0006 14 1 3.2287 -1.1632 0.3375 15 6 1.4397 -2.4173 0.6870 16 6 0.8128 -2.7185 -0.6845 17 1 -0.1109 -2.1710 -0.8721 18 6 0.6929 -4.1908 -0.9832 19 6 1.6922 -5.0600 -0.5873 20 6 1.5803 -6.4109 -0.8579 21 6 0.4732 -6.8915 -1.5319 22 6 -0.5238 -6.0216 -1.9320 23 6 -0.4140 -4.6713 -1.6577 24 6 2.0556 -2.0625 -1.3089 25 1 -0.3634 -1.0216 0.1111 26 1 -0.3632 0.6070 0.8293 27 1 -0.3633 0.4146 -0.9403 28 1 -0.6816 1.8402 -0.1203 29 1 1.6055 6.5401 -0.4174 30 1 1.1752 6.1119 2.4217 31 1 -0.6233 8.3335 0.5119 32 1 -1.3715 6.5049 -0.9081 33 1 3.0186 4.0453 0.3290 34 1 0.7188 -2.0809 1.4322 35 1 2.0886 -3.2122 1.0545 36 1 2.5586 -4.6841 -0.0636 37 1 2.3594 -7.0906 -0.5456 38 1 0.3874 -7.9466 -1.7463 39 1 -1.3886 -6.3970 -2.4589 40 1 -1.1928 -3.9916 -1.9706 41 1 2.8741 -2.7598 -1.4877 42 1 1.8320 -1.4397 -2.1750 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14797354_13456056.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 03:52:39 Heat of formation + Delta-G solvation = 40.702162 kcal Electronic energy + Delta-G solvation = -25398.789623 eV Core-core repulsion = 21700.539176 eV Total energy + Delta-G solvation = -3698.250447 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 314.135 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.77560 -41.86662 -40.22821 -38.80653 -38.01767 -35.80931 -33.83270 -32.23841 -31.79062 -31.32443 -28.80851 -26.96029 -26.57643 -26.26366 -24.41457 -23.48672 -22.35798 -21.90380 -21.18289 -19.82935 -18.84600 -18.26407 -17.75373 -17.57256 -17.35608 -17.09951 -16.51344 -16.35866 -16.08730 -15.75002 -15.64825 -15.07969 -14.97936 -14.37202 -14.28184 -14.23476 -14.17884 -14.06601 -13.92904 -13.69578 -13.50104 -13.02749 -12.95660 -12.74116 -12.57173 -12.21075 -12.05888 -11.71195 -11.62079 -11.23259 -11.11966 -10.96577 -10.64033 -9.83000 -9.81571 -9.78122 -9.52332 -4.97746 0.23355 0.44497 0.52056 0.78782 1.18779 1.47902 1.74787 1.86412 1.95101 2.14852 2.84552 3.28340 3.32319 3.46669 3.55472 3.63948 3.69870 3.83753 3.92680 3.99526 4.09379 4.17097 4.21425 4.23472 4.31306 4.33354 4.46802 4.49265 4.55799 4.61072 4.67116 4.72317 4.73743 4.83574 4.85088 4.94389 4.96456 5.09822 5.15108 5.18971 5.20452 5.53368 5.60625 5.66454 5.75508 5.82596 6.14420 6.21572 6.62570 7.00512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.586 5.586 3 C 0.582 3.418 4 O -0.588 6.588 5 C -0.266 4.266 6 C 0.045 3.955 7 O -0.163 6.163 8 C -0.050 4.050 9 C -0.039 4.039 10 O -0.545 6.545 11 Si 0.802 3.198 12 C -0.154 4.154 13 C 0.112 3.888 14 H 0.081 0.919 15 C -0.129 4.129 16 C -0.068 4.068 17 H 0.125 0.875 18 C -0.079 4.079 19 C -0.128 4.128 20 C -0.132 4.132 21 C -0.138 4.138 22 C -0.131 4.131 23 C -0.125 4.125 24 C -0.137 4.137 25 H 0.116 0.884 26 H 0.096 0.904 27 H 0.090 0.910 28 H 0.272 0.728 29 H 0.128 0.872 30 H 0.400 0.600 31 H -0.285 1.285 32 H -0.286 1.286 33 H 0.141 0.859 34 H 0.092 0.908 35 H 0.102 0.898 36 H 0.129 0.871 37 H 0.130 0.870 38 H 0.130 0.870 39 H 0.134 0.866 40 H 0.139 0.861 41 H 0.090 0.910 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.886 -2.730 2.054 9.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.316 5.316 3 C 0.373 3.627 4 O -0.470 6.470 5 C -0.270 4.270 6 C -0.025 4.025 7 O -0.059 6.059 8 C -0.098 4.098 9 C -0.148 4.148 10 O -0.354 6.354 11 Si 0.705 3.295 12 C -0.174 4.174 13 C 0.008 3.992 14 H 0.099 0.901 15 C -0.166 4.166 16 C -0.086 4.086 17 H 0.143 0.857 18 C -0.079 4.079 19 C -0.146 4.146 20 C -0.150 4.150 21 C -0.156 4.156 22 C -0.148 4.148 23 C -0.143 4.143 24 C -0.176 4.176 25 H 0.134 0.866 26 H 0.114 0.886 27 H 0.108 0.892 28 H 0.287 0.713 29 H 0.145 0.855 30 H 0.251 0.749 31 H -0.212 1.212 32 H -0.213 1.213 33 H 0.159 0.841 34 H 0.111 0.889 35 H 0.120 0.880 36 H 0.147 0.853 37 H 0.148 0.852 38 H 0.148 0.852 39 H 0.152 0.848 40 H 0.156 0.844 41 H 0.108 0.892 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -8.652 -1.768 1.240 8.918 hybrid contribution 1.480 -0.525 -0.532 1.658 sum -7.172 -2.293 0.708 7.563 Atomic orbital electron populations 1.23016 0.77635 1.07073 1.03648 1.47357 1.08098 1.04035 1.72137 1.17616 0.86142 0.83476 0.75456 1.90774 1.15843 1.87845 1.52542 1.21408 0.94829 0.93705 1.17092 1.26581 0.96425 0.83450 0.95996 1.83761 1.33727 1.18583 1.69821 1.22810 0.83197 0.95792 1.08043 1.24720 1.12568 0.87180 0.90325 1.86543 1.55128 1.78552 1.15127 0.93159 0.73678 0.77170 0.85473 1.22526 1.00126 0.90589 1.04178 1.21955 0.96534 0.82614 0.98077 0.90089 1.23463 0.99942 0.96612 0.96611 1.21865 0.99119 0.91318 0.96289 0.85725 1.19864 0.94567 0.95280 0.98192 1.21227 0.99275 0.93442 1.00677 1.21409 0.98551 0.96037 0.98986 1.21443 0.94620 1.00652 0.98927 1.21449 0.99462 0.93912 1.00020 1.21337 0.98219 0.95903 0.98836 1.23443 0.98499 0.98617 0.97046 0.86609 0.88619 0.89230 0.71286 0.85459 0.74886 1.21174 1.21276 0.84064 0.88904 0.87979 0.85276 0.85171 0.85174 0.84787 0.84359 0.89189 0.91494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.28 7.46 127.77 0.95 0.67 16 2 N -0.59 0.12 3.07 -823.55 -2.53 -2.41 16 3 C 0.58 4.74 7.67 86.65 0.66 5.41 16 4 O -0.59 -10.82 16.57 -4.07 -0.07 -10.89 16 5 C -0.27 -1.07 6.21 -18.99 -0.12 -1.19 16 6 C 0.04 -0.20 10.10 67.39 0.68 0.48 16 7 O -0.16 0.34 8.89 4.35 0.04 0.38 16 8 C -0.05 -0.07 6.20 24.76 0.15 0.09 16 9 C -0.04 0.04 2.98 71.24 0.21 0.25 16 10 O -0.55 0.16 12.86 -148.98 -1.92 -1.76 16 11 Si 0.80 -2.90 32.08 68.60 2.20 -0.70 16 12 C -0.15 -1.00 10.89 23.65 0.26 -0.74 16 13 C 0.11 0.05 4.36 45.52 0.20 0.25 16 14 H 0.08 0.50 7.41 -2.39 -0.02 0.48 16 15 C -0.13 0.62 6.64 31.12 0.21 0.83 16 16 C -0.07 0.35 3.32 -11.02 -0.04 0.31 16 17 H 0.13 -1.16 5.51 -2.39 -0.01 -1.18 16 18 C -0.08 0.11 5.29 -19.86 -0.11 0.01 16 19 C -0.13 0.01 8.60 22.27 0.19 0.20 16 20 C -0.13 -0.09 10.05 22.27 0.22 0.13 16 21 C -0.14 -0.08 10.05 22.27 0.22 0.15 16 22 C -0.13 0.05 10.05 22.27 0.22 0.27 16 23 C -0.13 0.19 9.71 22.27 0.22 0.40 16 24 C -0.14 0.13 7.30 31.12 0.23 0.36 16 25 H 0.12 -1.57 3.96 -2.39 -0.01 -1.58 16 26 H 0.10 -1.36 6.10 -2.39 -0.01 -1.37 16 27 H 0.09 -1.27 6.91 -2.39 -0.02 -1.29 16 28 H 0.27 -3.90 4.19 -2.91 -0.01 -3.92 16 29 H 0.13 -0.05 7.96 -2.39 -0.02 -0.07 16 30 H 0.40 -3.52 8.70 -74.06 -0.64 -4.16 16 31 H -0.28 -0.73 7.11 99.48 0.71 -0.02 16 32 H -0.29 -0.57 7.11 99.48 0.71 0.14 16 33 H 0.14 1.36 8.06 -2.91 -0.02 1.33 16 34 H 0.09 -0.67 7.26 -2.39 -0.02 -0.69 16 35 H 0.10 -0.48 6.32 -2.39 -0.02 -0.49 16 36 H 0.13 -0.31 6.68 -2.91 -0.02 -0.33 16 37 H 0.13 -0.27 8.06 -2.91 -0.02 -0.29 16 38 H 0.13 -0.30 8.06 -2.91 -0.02 -0.32 16 39 H 0.13 -0.50 8.06 -2.91 -0.02 -0.52 16 40 H 0.14 -0.82 8.06 -2.91 -0.02 -0.84 16 41 H 0.09 0.01 7.71 -2.39 -0.02 -0.01 16 42 H 0.07 0.05 8.14 -2.39 -0.02 0.03 16 Total: 0.00 -25.18 341.70 2.56 -22.62 By element: Atomic # 1 Polarization: -15.58 SS G_CDS: 0.46 Total: -15.12 kcal Atomic # 6 Polarization: 3.51 SS G_CDS: 4.37 Total: 7.88 kcal Atomic # 7 Polarization: 0.12 SS G_CDS: -2.53 Total: -2.41 kcal Atomic # 8 Polarization: -10.33 SS G_CDS: -1.95 Total: -12.28 kcal Atomic # 14 Polarization: -2.90 SS G_CDS: 2.20 Total: -0.70 kcal Total: -25.18 2.56 -22.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14797354_13456056.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.326 kcal (2) G-P(sol) polarization free energy of solvation -25.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.623 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds