Wall clock time and date at job start Sun Mar 7 2021 03:56:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37936 * 120.07203 * 2 1 4 4 C 1.38386 * 120.14286 * 179.97438 * 3 2 1 5 5 C 1.50698 * 119.85140 * 180.02562 * 4 3 2 6 6 C 1.38337 * 120.29341 * 359.97438 * 4 3 2 7 7 C 1.50703 * 119.92553 * 180.02562 * 6 4 3 8 8 O 1.42898 * 109.46921 * 75.00468 * 7 6 4 9 9 Si 1.86296 * 109.46748 * 195.00170 * 7 6 4 10 10 C 1.37973 * 120.14385 * 359.78966 * 6 4 3 11 11 C 1.39556 * 119.85503 * 0.44463 * 10 6 4 12 12 C 1.47845 * 120.14847 * 179.81186 * 11 10 6 13 13 O 1.21546 * 120.00164 * 131.50811 * 12 11 10 14 14 N 1.34780 * 119.99852 * 311.50848 * 12 11 10 15 15 C 1.46504 * 119.99865 * 4.52521 * 14 12 11 16 16 C 1.46498 * 120.00170 * 184.51958 * 14 12 11 17 17 H 1.09001 * 112.84659 * 17.81952 * 16 14 12 18 18 C 1.53786 * 113.61282 * 149.12169 * 16 14 12 19 19 C 1.53786 * 87.07841 * 89.11879 * 18 16 14 20 20 H 1.09000 * 113.61656 * 270.88209 * 19 18 16 21 21 C 1.50700 * 113.61186 * 139.97583 * 19 18 16 22 22 C 1.38233 * 120.00318 * 322.23480 * 21 19 18 23 23 C 1.38232 * 119.99742 * 179.76412 * 22 21 19 24 24 C 1.38240 * 120.00236 * 0.48388 * 23 22 21 25 25 C 1.38235 * 119.99847 * 359.78723 * 24 23 22 26 26 C 1.38234 * 119.99715 * 359.96344 * 25 24 23 27 27 C 1.53777 * 113.61794 * 246.62253 * 16 14 12 28 28 H 1.08999 * 109.46992 * 274.19186 * 1 2 3 29 29 H 1.09007 * 109.46935 * 34.18871 * 1 2 3 30 30 H 1.08999 * 109.47055 * 154.19243 * 1 2 3 31 31 H 1.07997 * 119.92812 * 359.97438 * 3 2 1 32 32 H 1.09004 * 109.47158 * 89.99755 * 5 4 3 33 33 H 1.09003 * 109.47417 * 209.99247 * 5 4 3 34 34 H 1.08997 * 109.47743 * 330.00081 * 5 4 3 35 35 H 1.08995 * 109.47434 * 315.00241 * 7 6 4 36 36 H 0.96699 * 114.00767 * 60.00021 * 8 7 6 37 37 H 1.48500 * 109.99804 * 180.02562 * 9 7 6 38 38 H 1.48496 * 110.00154 * 301.31806 * 9 7 6 39 39 H 1.08001 * 120.07571 * 180.23107 * 10 6 4 40 40 H 1.08996 * 109.46839 * 208.85736 * 15 14 12 41 41 H 1.08997 * 109.47314 * 88.85317 * 15 14 12 42 42 H 1.09003 * 109.47227 * 328.85544 * 15 14 12 43 43 H 1.08998 * 113.61329 * 203.66666 * 18 16 14 44 44 H 1.08996 * 113.61578 * 334.57512 * 18 16 14 45 45 H 1.07994 * 120.00074 * 359.97438 * 22 21 19 46 46 H 1.08005 * 119.99885 * 180.25155 * 23 22 21 47 47 H 1.08001 * 120.00048 * 179.77320 * 24 23 22 48 48 H 1.07991 * 119.99893 * 179.97438 * 25 24 23 49 49 H 1.08002 * 119.99693 * 179.97438 * 26 25 24 50 50 H 1.08999 * 113.61296 * 25.42891 * 27 16 14 51 51 H 1.08998 * 113.61458 * 156.33294 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1937 0.0000 4 6 3.5820 1.1954 0.0005 5 6 4.3305 2.5034 0.0011 6 6 4.2813 0.0018 0.0016 7 6 5.7883 0.0133 0.0028 8 8 6.2609 0.3661 1.3044 9 14 6.4225 -1.6787 -0.4506 10 6 3.6021 -1.1992 0.0065 11 6 2.2066 -1.2080 0.0010 12 6 1.4722 -2.4912 0.0021 13 8 0.5617 -2.6697 0.7873 14 7 1.8123 -3.4630 -0.8677 15 6 2.9716 -3.2871 -1.7460 16 6 1.0227 -4.6952 -0.9349 17 1 0.0375 -4.5918 -0.4802 18 6 0.9938 -5.3327 -2.3340 19 6 2.2597 -6.1032 -1.9230 20 1 3.1853 -5.5714 -2.1431 21 6 2.2772 -7.5331 -2.3987 22 6 1.1104 -8.2743 -2.4033 23 6 1.1257 -9.5844 -2.8442 24 6 2.3096 -10.1563 -3.2712 25 6 3.4774 -9.4167 -3.2613 26 6 3.4612 -8.1051 -2.8252 27 6 1.7888 -5.9440 -0.4676 28 1 -0.3633 0.0751 1.0249 29 1 -0.3633 0.8501 -0.5775 30 1 -0.3633 -0.9252 -0.4474 31 1 1.6582 2.1290 -0.0004 32 1 4.5106 2.8185 1.0289 33 1 5.2837 2.3768 -0.5123 34 1 3.7388 3.2609 -0.5127 35 1 6.1467 0.7424 -0.7239 36 1 5.9797 -0.2406 2.0029 37 1 7.9075 -1.6807 -0.4525 38 1 5.9149 -2.6868 0.5143 39 1 4.1491 -2.1304 0.0111 40 1 2.8183 -3.8493 -2.6670 41 1 3.8673 -3.6513 -1.2427 42 1 3.0919 -2.2296 -1.9815 43 1 0.1286 -5.9735 -2.5040 44 1 1.1595 -4.6203 -3.1421 45 1 0.1864 -7.8290 -2.0656 46 1 0.2133 -10.1623 -2.8516 47 1 2.3222 -11.1809 -3.6122 48 1 4.4024 -9.8636 -3.5944 49 1 4.3737 -7.5274 -2.8171 50 1 2.5963 -5.7249 0.2309 51 1 1.1409 -6.7518 -0.1274 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14797354_9599494.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 03:56:14 Heat of formation + Delta-G solvation = 29.514486 kcal Electronic energy + Delta-G solvation = -31439.541924 eV Core-core repulsion = 27464.649538 eV Total energy + Delta-G solvation = -3974.892386 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 352.183 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -42.17263 -41.11044 -39.97616 -38.83854 -37.74069 -35.67013 -34.50461 -33.33485 -31.90259 -31.61382 -29.39948 -28.58702 -28.47901 -26.72452 -26.03408 -25.27779 -23.76871 -23.48953 -22.93869 -21.78840 -20.63887 -19.73114 -18.82811 -18.12390 -17.57178 -17.51662 -17.07129 -16.64555 -16.44438 -16.17076 -16.13981 -15.80537 -15.59072 -15.13324 -15.03785 -14.74992 -14.69856 -14.34538 -14.20396 -14.14127 -14.00390 -13.97589 -13.91959 -13.61716 -13.37574 -13.11238 -13.04936 -12.94762 -12.79544 -12.69496 -12.59110 -12.46794 -12.10897 -11.92530 -11.83539 -11.70281 -11.59566 -11.18030 -10.92236 -10.60258 -9.86840 -9.81803 -9.77850 -9.60846 -9.49880 -5.02090 -0.13867 0.15846 0.45594 0.52901 1.25184 1.51327 1.53384 1.82103 1.91642 2.50786 2.85769 3.30490 3.37497 3.47466 3.60962 3.65865 3.69548 3.72462 3.78680 3.96436 4.04647 4.09489 4.17387 4.18848 4.20000 4.25688 4.33444 4.47577 4.50376 4.54508 4.57327 4.61274 4.62916 4.66373 4.67347 4.69591 4.74297 4.80595 4.82365 4.87418 4.91063 4.95164 4.99742 5.04777 5.11445 5.15955 5.20419 5.20667 5.24774 5.38999 5.51459 5.56840 5.61649 5.67141 5.77799 5.80829 6.15330 6.22927 6.43547 6.98527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.035 4.035 3 C -0.128 4.128 4 C -0.033 4.033 5 C -0.119 4.119 6 C -0.129 4.129 7 C -0.077 4.077 8 O -0.542 6.542 9 Si 0.755 3.245 10 C -0.082 4.082 11 C -0.148 4.148 12 C 0.560 3.440 13 O -0.570 6.570 14 N -0.587 5.587 15 C 0.046 3.954 16 C 0.113 3.887 17 H 0.087 0.913 18 C -0.129 4.129 19 C -0.069 4.069 20 H 0.119 0.881 21 C -0.078 4.078 22 C -0.128 4.128 23 C -0.131 4.131 24 C -0.139 4.139 25 C -0.130 4.130 26 C -0.126 4.126 27 C -0.138 4.138 28 H 0.071 0.929 29 H 0.088 0.912 30 H 0.054 0.946 31 H 0.148 0.852 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.134 0.866 36 H 0.384 0.616 37 H -0.297 1.297 38 H -0.282 1.282 39 H 0.141 0.859 40 H 0.104 0.896 41 H 0.072 0.928 42 H 0.091 0.909 43 H 0.103 0.897 44 H 0.090 0.910 45 H 0.131 0.869 46 H 0.131 0.869 47 H 0.130 0.870 48 H 0.134 0.866 49 H 0.137 0.863 50 H 0.064 0.936 51 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.050 0.724 -6.139 6.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.035 4.035 3 C -0.146 4.146 4 C -0.033 4.033 5 C -0.175 4.175 6 C -0.129 4.129 7 C -0.186 4.186 8 O -0.349 6.349 9 Si 0.661 3.339 10 C -0.100 4.100 11 C -0.151 4.151 12 C 0.350 3.650 13 O -0.450 6.450 14 N -0.318 5.318 15 C -0.095 4.095 16 C 0.009 3.991 17 H 0.105 0.895 18 C -0.166 4.166 19 C -0.087 4.087 20 H 0.136 0.864 21 C -0.078 4.078 22 C -0.145 4.145 23 C -0.149 4.149 24 C -0.157 4.157 25 C -0.148 4.148 26 C -0.144 4.144 27 C -0.177 4.177 28 H 0.089 0.911 29 H 0.107 0.893 30 H 0.073 0.927 31 H 0.166 0.834 32 H 0.092 0.908 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.152 0.848 36 H 0.233 0.767 37 H -0.224 1.224 38 H -0.209 1.209 39 H 0.158 0.842 40 H 0.122 0.878 41 H 0.091 0.909 42 H 0.109 0.891 43 H 0.121 0.879 44 H 0.108 0.892 45 H 0.148 0.852 46 H 0.149 0.851 47 H 0.148 0.852 48 H 0.152 0.848 49 H 0.155 0.845 50 H 0.083 0.917 51 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 2.312 0.420 -5.835 6.290 hybrid contribution -0.289 -0.214 1.587 1.627 sum 2.023 0.206 -4.248 4.710 Atomic orbital electron populations 1.20840 0.90321 1.03038 1.02911 1.20084 0.96658 0.91840 0.94958 1.21135 0.93671 0.97837 1.01937 1.20175 0.93406 0.95803 0.93948 1.20931 1.00517 0.92952 1.03109 1.20038 0.96290 0.92500 1.04114 1.25152 0.91259 1.13894 0.88282 1.86587 1.76401 1.54901 1.17052 0.94438 0.77593 0.73243 0.88671 1.21337 0.92469 0.98537 0.97619 1.19582 0.93966 0.92479 1.09043 1.18613 0.82559 0.83874 0.79983 1.90775 1.32452 1.81642 1.40127 1.47518 1.30327 1.16082 1.37873 1.22576 0.86900 1.04787 0.95281 1.21957 0.95136 0.83203 0.98809 0.89487 1.23444 0.98581 0.98899 0.95723 1.21785 0.99843 0.91794 0.95261 0.86352 1.19862 0.93448 0.95758 0.98735 1.21222 0.98539 0.94479 1.00294 1.21414 0.98749 0.95702 0.99065 1.21441 0.93150 1.00725 1.00350 1.21440 0.98864 0.94820 0.99714 1.21338 0.98254 0.95608 0.99223 1.23438 1.00316 0.97465 0.96448 0.91067 0.89300 0.92680 0.83446 0.90814 0.90235 0.90067 0.84844 0.76702 1.22425 1.20930 0.84167 0.87777 0.90942 0.89070 0.87854 0.89157 0.85161 0.85092 0.85158 0.84836 0.84531 0.91747 0.88976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.38 9.14 71.24 0.65 0.27 16 2 C -0.03 -0.12 5.91 -19.61 -0.12 -0.23 16 3 C -0.13 -0.02 9.35 22.23 0.21 0.19 16 4 C -0.03 0.02 5.89 -19.81 -0.12 -0.09 16 5 C -0.12 0.41 9.53 71.24 0.68 1.09 16 6 C -0.13 0.16 5.25 -19.90 -0.10 0.06 16 7 C -0.08 0.23 2.04 71.24 0.15 0.37 16 8 O -0.54 -0.28 12.80 -148.98 -1.91 -2.18 16 9 Si 0.75 -3.01 30.25 68.60 2.08 -0.94 16 10 C -0.08 0.01 6.29 22.52 0.14 0.15 16 11 C -0.15 -0.58 4.91 -20.09 -0.10 -0.68 16 12 C 0.56 4.01 6.34 86.79 0.55 4.56 16 13 O -0.57 -8.57 15.10 -3.86 -0.06 -8.63 16 14 N -0.59 -0.56 3.08 -823.05 -2.53 -3.09 16 15 C 0.05 -0.29 7.39 127.77 0.94 0.65 16 16 C 0.11 0.07 4.37 45.52 0.20 0.27 16 17 H 0.09 0.44 7.38 -2.39 -0.02 0.42 16 18 C -0.13 0.52 6.65 31.12 0.21 0.72 16 19 C -0.07 0.26 3.34 -11.01 -0.04 0.22 16 20 H 0.12 -0.82 5.79 -2.39 -0.01 -0.83 16 21 C -0.08 0.05 5.29 -19.87 -0.11 -0.06 16 22 C -0.13 -0.03 8.60 22.27 0.19 0.16 16 23 C -0.13 -0.12 10.05 22.27 0.22 0.10 16 24 C -0.14 -0.14 10.05 22.27 0.22 0.09 16 25 C -0.13 -0.04 10.05 22.27 0.22 0.18 16 26 C -0.13 0.06 9.71 22.27 0.22 0.28 16 27 C -0.14 0.06 7.29 31.12 0.23 0.29 16 28 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 29 H 0.09 -0.11 8.11 -2.38 -0.02 -0.13 16 30 H 0.05 0.36 6.45 -2.39 -0.02 0.34 16 31 H 0.15 -0.52 8.06 -2.91 -0.02 -0.54 16 32 H 0.07 -0.14 8.14 -2.39 -0.02 -0.16 16 33 H 0.08 -0.36 6.22 -2.39 -0.01 -0.37 16 34 H 0.08 -0.47 8.08 -2.39 -0.02 -0.49 16 35 H 0.13 -0.74 6.48 -2.39 -0.02 -0.76 16 36 H 0.38 -1.42 8.70 -74.06 -0.64 -2.07 16 37 H -0.30 -1.04 7.11 99.48 0.71 -0.34 16 38 H -0.28 -0.01 6.67 99.48 0.66 0.65 16 39 H 0.14 -0.35 3.17 -2.91 -0.01 -0.36 16 40 H 0.10 -1.04 4.93 -2.39 -0.01 -1.05 16 41 H 0.07 -0.63 7.22 -2.39 -0.02 -0.65 16 42 H 0.09 -0.69 5.96 -2.39 -0.01 -0.70 16 43 H 0.10 -0.45 6.32 -2.39 -0.02 -0.47 16 44 H 0.09 -0.52 6.95 -2.39 -0.02 -0.54 16 45 H 0.13 -0.31 6.68 -2.91 -0.02 -0.33 16 46 H 0.13 -0.26 8.06 -2.91 -0.02 -0.29 16 47 H 0.13 -0.26 8.06 -2.91 -0.02 -0.28 16 48 H 0.13 -0.40 8.06 -2.92 -0.02 -0.43 16 49 H 0.14 -0.62 8.06 -2.91 -0.02 -0.64 16 50 H 0.06 0.09 8.14 -2.39 -0.02 0.07 16 51 H 0.09 0.01 7.71 -2.39 -0.02 -0.01 16 Total: 0.00 -18.21 393.30 2.34 -15.86 By element: Atomic # 1 Polarization: -9.92 SS G_CDS: 0.31 Total: -9.60 kcal Atomic # 6 Polarization: 4.13 SS G_CDS: 4.45 Total: 8.58 kcal Atomic # 7 Polarization: -0.56 SS G_CDS: -2.53 Total: -3.09 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: -1.97 Total: -10.81 kcal Atomic # 14 Polarization: -3.01 SS G_CDS: 2.08 Total: -0.94 kcal Total: -18.21 2.34 -15.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14797354_9599494.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.375 kcal (2) G-P(sol) polarization free energy of solvation -18.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds