Wall clock time and date at job start Sun Mar 7 2021 03:25:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34220 * 117.00307 * 2 1 4 4 O 1.20831 * 119.99893 * 0.02562 * 3 2 1 5 5 C 1.50697 * 120.00362 * 179.97438 * 3 2 1 6 6 N 1.46902 * 109.47430 * 187.26703 * 5 3 2 7 7 C 1.46905 * 110.99649 * 84.56813 * 6 5 3 8 8 C 1.50703 * 109.47124 * 287.52718 * 7 6 5 9 9 C 1.38236 * 120.00069 * 96.58553 * 8 7 6 10 10 C 1.38235 * 119.99704 * 179.97438 * 9 8 7 11 11 C 1.38233 * 120.00228 * 0.28169 * 10 9 8 12 12 C 1.38240 * 119.99870 * 359.50893 * 11 10 9 13 13 C 1.38229 * 120.00009 * 0.44314 * 12 11 10 14 14 C 1.46900 * 111.00446 * 208.52119 * 6 5 3 15 15 H 1.08996 * 112.84966 * 197.24546 * 14 6 5 16 16 C 1.53784 * 113.61095 * 328.55221 * 14 6 5 17 17 C 1.53784 * 87.08032 * 139.98207 * 16 14 6 18 18 H 1.08991 * 113.61456 * 89.11261 * 17 16 14 19 19 N 1.46499 * 113.60995 * 220.02173 * 17 16 14 20 20 C 1.34779 * 119.99537 * 252.49220 * 19 17 16 21 21 O 1.21635 * 120.00041 * 0.02562 * 20 19 17 22 22 C 1.47188 * 119.99979 * 180.02562 * 20 19 17 23 23 C 1.36003 * 123.46127 * 0.02562 * 22 20 19 24 24 S 1.70448 * 110.82243 * 179.97438 * 23 22 20 25 25 C 1.75506 * 92.44192 * 0.02562 * 24 23 22 26 26 C 1.50699 * 124.71698 * 180.02562 * 25 24 23 27 27 O 1.42900 * 109.47510 * 119.97136 * 26 25 24 28 28 Si 1.86307 * 109.46801 * 359.97132 * 26 25 24 29 29 C 1.32774 * 110.57430 * 359.73650 * 25 24 23 30 30 C 1.53781 * 113.61310 * 66.04569 * 14 6 5 31 31 H 1.08999 * 109.47094 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46790 * 299.99627 * 1 2 3 33 33 H 1.09004 * 109.46845 * 59.99907 * 1 2 3 34 34 H 1.09006 * 109.46983 * 67.27018 * 5 3 2 35 35 H 1.09001 * 109.47621 * 307.26947 * 5 3 2 36 36 H 1.08997 * 109.47080 * 167.52868 * 7 6 5 37 37 H 1.08992 * 109.47079 * 47.52620 * 7 6 5 38 38 H 1.07993 * 119.99747 * 359.97438 * 9 8 7 39 39 H 1.08000 * 119.99480 * 180.02562 * 10 9 8 40 40 H 1.07998 * 119.99892 * 179.71960 * 11 10 9 41 41 H 1.08000 * 119.99552 * 180.28043 * 12 11 10 42 42 H 1.08003 * 120.00124 * 179.83388 * 13 12 11 43 43 H 1.09000 * 113.61302 * 254.52494 * 16 14 6 44 44 H 1.09001 * 113.61826 * 25.42822 * 16 14 6 45 45 H 0.96999 * 120.00814 * 72.49338 * 19 17 16 46 46 H 1.08006 * 124.59464 * 359.97438 * 23 22 20 47 47 H 1.09000 * 109.47501 * 239.97955 * 26 25 24 48 48 H 0.96701 * 113.99706 * 179.97438 * 27 26 25 49 49 H 1.48500 * 109.99552 * 60.00213 * 28 26 25 50 50 H 1.48498 * 110.00062 * 181.32027 * 28 26 25 51 51 H 1.08000 * 123.45904 * 180.23083 * 29 25 24 52 52 H 1.08996 * 113.61499 * 334.57120 * 30 14 6 53 53 H 1.09000 * 113.61082 * 105.47360 * 30 14 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 7 3.9834 2.6724 0.1757 7 6 4.0169 3.0375 1.5982 8 6 2.6079 3.1621 2.1181 9 6 2.0175 2.0995 2.7763 10 6 0.7252 2.2141 3.2537 11 6 0.0214 3.3892 3.0677 12 6 0.6133 4.4533 2.4133 13 6 1.9059 4.3392 1.9369 14 6 5.2842 2.9175 -0.4614 15 1 5.7625 3.8313 -0.1092 16 6 6.2133 1.6920 -0.4561 17 6 6.6201 2.0926 -1.8840 18 1 7.4650 2.7802 -1.9206 19 7 6.7723 0.9531 -2.7922 20 6 8.0013 0.5662 -3.1877 21 8 8.9840 1.1628 -2.7903 22 6 8.1543 -0.5782 -4.1006 23 6 7.1057 -1.2942 -4.5879 24 16 7.6488 -2.5432 -5.6126 25 6 9.3317 -2.0996 -5.3858 26 6 10.4990 -2.8042 -6.0275 27 8 11.2249 -1.8800 -6.8405 28 14 9.8738 -4.2043 -7.0857 29 6 9.4331 -1.0530 -4.5751 30 6 5.2536 2.7893 -1.9936 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 3.9503 0.8970 -0.9471 35 1 3.9615 0.6725 0.8187 36 1 4.5335 3.9899 1.7168 37 1 4.5441 2.2658 2.1590 38 1 2.5658 1.1800 2.9176 39 1 0.2641 1.3841 3.7682 40 1 -0.9898 3.4771 3.4367 41 1 0.0650 5.3730 2.2721 42 1 2.3674 5.1696 1.4232 43 1 7.0266 1.7639 0.2660 44 1 5.6822 0.7416 -0.4037 45 1 5.9887 0.4772 -3.1089 46 1 6.0690 -1.0979 -4.3568 47 1 11.1554 -3.1998 -5.2525 48 1 11.9921 -2.2658 -7.2853 49 1 8.9776 -3.6780 -8.1465 50 1 11.0168 -4.9271 -7.6990 51 1 10.3754 -0.6047 -4.2964 52 1 4.4601 2.1388 -2.3615 53 1 5.2921 3.7469 -2.5127 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14928150_6894386.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 03:25:34 Heat of formation + Delta-G solvation = -29.274309 kcal Electronic energy + Delta-G solvation = -37620.611804 eV Core-core repulsion = 32745.768336 eV Total energy + Delta-G solvation = -4874.843468 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 417.149 amu Computer time = 1.96 seconds Orbital eigenvalues (eV) -41.95430 -41.17577 -40.26126 -39.78437 -38.70245 -37.43788 -37.22337 -36.46125 -34.32737 -32.38293 -31.76151 -31.67114 -30.02926 -27.87723 -27.02821 -26.87422 -26.70509 -25.55606 -23.45602 -23.41305 -22.44922 -21.88087 -21.64979 -20.62163 -19.92754 -18.97739 -18.67989 -18.39404 -18.13000 -17.86230 -17.67483 -17.42752 -17.10661 -16.59394 -16.26829 -16.14090 -16.03704 -15.91976 -15.89903 -15.46924 -15.14312 -14.81508 -14.56129 -14.23595 -14.18489 -14.12532 -14.04796 -13.95201 -13.84635 -13.73323 -13.57936 -13.41611 -13.40054 -13.20420 -12.87936 -12.74706 -12.62573 -12.41571 -12.24649 -12.12258 -11.96854 -11.91363 -11.78676 -11.65226 -11.61624 -11.24790 -10.99249 -10.64060 -10.17452 -9.92098 -9.73142 -9.54228 -9.44175 -9.33354 -5.06468 -0.32845 0.37564 0.47992 0.59006 0.70569 0.82636 1.21669 1.42002 1.57940 1.71108 1.88550 2.11424 2.26267 2.75300 3.13595 3.29988 3.48078 3.57819 3.65403 3.72091 3.84344 3.87769 3.92675 3.96035 4.02377 4.03601 4.09963 4.17031 4.22152 4.28197 4.30596 4.34352 4.35911 4.42300 4.42806 4.56810 4.63193 4.65508 4.67428 4.72872 4.73302 4.74684 4.81451 4.93823 4.99003 5.03984 5.10865 5.17723 5.18340 5.20664 5.49759 5.53018 5.59116 5.67190 5.71665 5.89048 5.96390 6.20525 6.47056 6.52375 6.98743 7.15422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.370 6.370 3 C 0.448 3.552 4 O -0.495 6.495 5 C 0.060 3.940 6 N -0.514 5.514 7 C 0.093 3.907 8 C -0.071 4.071 9 C -0.131 4.131 10 C -0.129 4.129 11 C -0.132 4.132 12 C -0.130 4.130 13 C -0.093 4.093 14 C 0.078 3.922 15 H 0.122 0.878 16 C -0.183 4.183 17 C 0.122 3.878 18 H 0.099 0.901 19 N -0.699 5.699 20 C 0.578 3.422 21 O -0.583 6.583 22 C -0.183 4.183 23 C -0.190 4.190 24 S 0.248 5.752 25 C -0.213 4.213 26 C -0.050 4.050 27 O -0.557 6.557 28 Si 0.726 3.274 29 C -0.078 4.078 30 C -0.128 4.128 31 H 0.123 0.877 32 H 0.053 0.947 33 H 0.055 0.945 34 H 0.132 0.868 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.061 0.939 38 H 0.122 0.878 39 H 0.127 0.873 40 H 0.126 0.874 41 H 0.124 0.876 42 H 0.120 0.880 43 H 0.072 0.928 44 H 0.105 0.895 45 H 0.414 0.586 46 H 0.208 0.792 47 H 0.102 0.898 48 H 0.398 0.602 49 H -0.271 1.271 50 H -0.257 1.257 51 H 0.132 0.868 52 H 0.098 0.902 53 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.704 -7.366 0.165 7.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.287 6.287 3 C 0.289 3.711 4 O -0.381 6.381 5 C -0.068 4.068 6 N -0.236 5.236 7 C -0.033 4.033 8 C -0.071 4.071 9 C -0.149 4.149 10 C -0.147 4.147 11 C -0.151 4.151 12 C -0.148 4.148 13 C -0.112 4.112 14 C -0.030 4.030 15 H 0.140 0.860 16 C -0.223 4.223 17 C 0.016 3.984 18 H 0.117 0.883 19 N -0.350 5.350 20 C 0.365 3.635 21 O -0.465 6.465 22 C -0.201 4.201 23 C -0.328 4.328 24 S 0.515 5.485 25 C -0.329 4.329 26 C -0.160 4.160 27 O -0.368 6.368 28 Si 0.626 3.374 29 C -0.108 4.108 30 C -0.167 4.167 31 H 0.141 0.859 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.150 0.850 35 H 0.113 0.887 36 H 0.115 0.885 37 H 0.079 0.921 38 H 0.140 0.860 39 H 0.145 0.855 40 H 0.144 0.856 41 H 0.142 0.858 42 H 0.138 0.862 43 H 0.091 0.909 44 H 0.123 0.877 45 H 0.252 0.748 46 H 0.224 0.776 47 H 0.120 0.880 48 H 0.249 0.751 49 H -0.197 1.197 50 H -0.182 1.182 51 H 0.150 0.850 52 H 0.117 0.883 53 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.827 -7.395 -1.206 8.413 hybrid contribution 1.764 1.444 0.680 2.379 sum -2.063 -5.951 -0.526 6.320 Atomic orbital electron populations 1.23324 0.75666 1.04822 1.01821 1.86455 1.24073 1.33658 1.84551 1.24023 0.92755 0.81301 0.73002 1.90730 1.67155 1.36645 1.43538 1.21776 0.87431 0.91406 1.06223 1.61312 1.28469 1.19677 1.14174 1.21221 0.92642 1.02698 0.86777 1.19762 0.96302 0.93797 0.97259 1.21146 0.95718 0.98396 0.99677 1.21226 0.95046 0.98081 1.00371 1.21294 1.00278 0.93828 0.99669 1.21307 0.95746 0.99171 0.98602 1.20989 0.94504 0.97777 0.97901 1.23075 0.86420 0.98852 0.94695 0.86018 1.24315 1.00594 1.00285 0.97110 1.22345 0.98618 0.88193 0.89204 0.88251 1.45660 1.07583 1.33185 1.48587 1.17874 0.83444 0.82667 0.79475 1.90787 1.39831 1.57262 1.58572 1.20101 0.93419 1.00998 1.05584 1.26178 1.04458 1.00204 1.01957 1.82924 0.95091 1.28431 1.42092 1.23834 0.99262 1.03908 1.05896 1.24398 0.93611 0.98565 0.99476 1.86570 1.46030 1.38647 1.65529 0.94551 0.83213 0.77686 0.81915 1.20985 0.97797 0.95418 0.96585 1.23493 0.95295 1.01895 0.96026 0.85899 0.92836 0.92639 0.84997 0.88659 0.88505 0.92075 0.85990 0.85478 0.85571 0.85831 0.86224 0.90873 0.87692 0.74813 0.77561 0.88011 0.75064 1.19695 1.18185 0.85035 0.88347 0.89926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 -0.05 10.56 113.37 1.20 1.15 16 2 O -0.37 -0.35 10.56 -51.32 -0.54 -0.90 16 3 C 0.45 0.87 5.95 71.23 0.42 1.29 16 4 O -0.50 -4.05 13.11 21.95 0.29 -3.76 16 5 C 0.06 -0.26 3.88 85.56 0.33 0.07 16 6 N -0.51 1.52 4.14 -876.96 -3.63 -2.10 16 7 C 0.09 -0.20 5.09 85.56 0.44 0.24 16 8 C -0.07 -0.20 3.23 -19.86 -0.06 -0.27 16 9 C -0.13 -0.37 7.37 22.27 0.16 -0.21 16 10 C -0.13 -0.48 10.05 22.27 0.22 -0.26 16 11 C -0.13 -0.64 10.05 22.27 0.22 -0.42 16 12 C -0.13 -0.74 10.05 22.27 0.22 -0.51 16 13 C -0.09 -0.49 9.05 22.27 0.20 -0.29 16 14 C 0.08 -0.44 3.90 45.44 0.18 -0.26 16 15 H 0.12 -0.77 7.80 -2.39 -0.02 -0.79 16 16 C -0.18 1.05 7.03 31.12 0.22 1.27 16 17 C 0.12 -0.34 4.24 45.52 0.19 -0.15 16 18 H 0.10 0.22 7.46 -2.39 -0.02 0.20 16 19 N -0.70 1.74 5.32 -443.52 -2.36 -0.62 16 20 C 0.58 3.39 7.79 86.59 0.67 4.07 16 21 O -0.58 -8.92 16.40 -4.14 -0.07 -8.99 16 22 C -0.18 -0.58 5.98 -19.87 -0.12 -0.70 16 23 C -0.19 0.80 10.38 67.30 0.70 1.49 16 24 S 0.25 -0.92 20.18 -56.49 -1.14 -2.06 16 25 C -0.21 -0.43 5.72 24.51 0.14 -0.29 16 26 C -0.05 0.04 2.94 71.24 0.21 0.24 16 27 O -0.56 -1.51 12.82 -148.98 -1.91 -3.42 16 28 Si 0.73 -2.59 30.91 68.60 2.12 -0.47 16 29 C -0.08 -0.49 9.91 22.67 0.22 -0.26 16 30 C -0.13 0.73 7.26 31.12 0.23 0.96 16 31 H 0.12 -0.81 8.14 -2.39 -0.02 -0.83 16 32 H 0.05 0.04 8.13 -2.39 -0.02 0.02 16 33 H 0.05 -0.01 8.13 -2.39 -0.02 -0.03 16 34 H 0.13 -1.13 5.25 -2.38 -0.01 -1.15 16 35 H 0.10 -0.67 7.41 -2.39 -0.02 -0.69 16 36 H 0.10 -0.34 7.75 -2.39 -0.02 -0.36 16 37 H 0.06 -0.27 7.63 -2.39 -0.02 -0.29 16 38 H 0.12 -0.03 8.06 -2.91 -0.02 -0.05 16 39 H 0.13 0.05 8.06 -2.91 -0.02 0.03 16 40 H 0.13 0.21 8.06 -2.91 -0.02 0.19 16 41 H 0.12 0.39 8.06 -2.91 -0.02 0.36 16 42 H 0.12 0.46 8.06 -2.91 -0.02 0.43 16 43 H 0.07 -0.26 8.14 -2.39 -0.02 -0.28 16 44 H 0.10 -0.85 5.67 -2.39 -0.01 -0.87 16 45 H 0.41 -3.81 7.22 -92.71 -0.67 -4.47 16 46 H 0.21 -2.56 7.01 -2.91 -0.02 -2.58 16 47 H 0.10 -0.43 7.96 -2.39 -0.02 -0.45 16 48 H 0.40 -2.36 8.74 -74.06 -0.65 -3.01 16 49 H -0.27 -0.65 7.11 99.48 0.71 0.06 16 50 H -0.26 0.11 7.11 99.48 0.71 0.82 16 51 H 0.13 1.30 8.06 -2.91 -0.02 1.27 16 52 H 0.10 -0.72 6.83 -2.39 -0.02 -0.74 16 53 H 0.08 -0.37 8.14 -2.39 -0.02 -0.39 16 Total: 0.00 -27.21 443.83 -1.55 -28.76 By element: Atomic # 1 Polarization: -13.29 SS G_CDS: -0.31 Total: -13.61 kcal Atomic # 6 Polarization: 1.16 SS G_CDS: 6.00 Total: 7.16 kcal Atomic # 7 Polarization: 3.27 SS G_CDS: -5.99 Total: -2.72 kcal Atomic # 8 Polarization: -14.83 SS G_CDS: -2.23 Total: -17.06 kcal Atomic # 14 Polarization: -2.59 SS G_CDS: 2.12 Total: -0.47 kcal Atomic # 16 Polarization: -0.92 SS G_CDS: -1.14 Total: -2.06 kcal Total: -27.21 -1.55 -28.76 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14928150_6894386.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.516 kcal (2) G-P(sol) polarization free energy of solvation -27.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.96 seconds