Wall clock time and date at job start Sun Mar 7 2021 00:31:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86295 * 109.47491 * 2 1 4 4 C 1.50706 * 109.47093 * 239.99795 * 2 1 3 5 5 C 1.37948 * 119.91860 * 300.25627 * 4 2 1 6 6 C 1.39601 * 119.86882 * 180.25387 * 5 4 2 7 7 C 1.47837 * 120.13882 * 179.77315 * 6 5 4 8 8 O 1.21551 * 120.00532 * 359.71788 * 7 6 5 9 9 N 1.34779 * 120.00174 * 179.72439 * 7 6 5 10 10 C 1.46500 * 120.00290 * 179.97438 * 9 7 6 11 11 H 1.08997 * 112.84770 * 336.19451 * 10 9 7 12 12 C 1.53779 * 113.69294 * 107.46217 * 10 9 7 13 13 C 1.53771 * 87.08321 * 139.99186 * 12 10 9 14 14 H 1.09002 * 113.69237 * 89.12563 * 13 12 10 15 15 C 1.52999 * 113.61697 * 220.02077 * 13 12 10 16 16 N 1.46502 * 109.47056 * 272.49988 * 15 13 12 17 17 C 1.35315 * 125.87191 * 125.00095 * 16 15 13 18 18 C 1.35344 * 106.17731 * 179.73450 * 17 16 15 19 19 N 1.33776 * 106.49718 * 359.97438 * 18 17 16 20 20 N 1.28633 * 108.88517 * 359.97438 * 19 18 17 21 21 C 1.53784 * 87.08409 * 334.56760 * 13 12 10 22 22 C 1.39546 * 119.71714 * 359.49278 * 6 5 4 23 23 C 1.38072 * 119.84539 * 0.25282 * 22 6 5 24 24 Br 1.89101 * 119.93543 * 179.97438 * 23 22 6 25 25 C 1.38358 * 119.91904 * 120.00470 * 4 2 1 26 26 H 0.96696 * 114.00234 * 60.00308 * 1 2 3 27 27 H 1.09004 * 109.47166 * 119.99969 * 2 1 3 28 28 H 1.48504 * 109.99726 * 298.68120 * 3 2 1 29 29 H 1.48502 * 110.00028 * 59.99463 * 3 2 1 30 30 H 1.07997 * 120.06720 * 0.02562 * 5 4 2 31 31 H 0.97001 * 119.99710 * 359.97438 * 9 7 6 32 32 H 1.09004 * 113.61194 * 25.44442 * 12 10 9 33 33 H 1.08996 * 113.61514 * 254.54336 * 12 10 9 34 34 H 1.09004 * 109.47423 * 152.49946 * 15 13 12 35 35 H 1.09002 * 109.47147 * 32.49877 * 15 13 12 36 36 H 1.07998 * 126.90914 * 359.71348 * 17 16 15 37 37 H 1.08000 * 126.75529 * 179.97438 * 18 17 16 38 38 H 1.08994 * 113.61304 * 139.97695 * 21 13 12 39 39 H 1.08999 * 113.61721 * 270.80238 * 21 13 12 40 40 H 1.08004 * 120.07700 * 180.27740 * 22 6 5 41 41 H 1.07993 * 119.86227 * 0.02562 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2305 5 6 1.5927 -2.0297 -1.4497 6 6 2.0629 -2.6883 -2.5872 7 6 1.7078 -4.1035 -2.8255 8 8 1.0092 -4.6976 -2.0277 9 7 2.1588 -4.7351 -3.9275 10 6 1.8074 -6.1376 -4.1634 11 1 1.5546 -6.6705 -3.2468 12 6 0.7839 -6.3365 -5.2938 13 6 1.6077 -7.5640 -5.7172 14 1 1.3013 -8.4877 -5.2263 15 6 1.7474 -7.7151 -7.2333 16 7 0.6089 -8.4750 -7.7553 17 6 -0.2297 -8.0722 -8.7379 18 6 -1.1239 -9.0744 -8.9049 19 7 -0.7927 -10.0290 -8.0282 20 7 0.2386 -9.6437 -7.3629 21 6 2.8162 -6.8844 -5.0519 22 6 2.8648 -2.0036 -3.5012 23 6 3.1922 -0.6818 -3.2728 24 35 4.2792 0.2484 -4.5094 25 6 2.7267 -0.0365 -2.1401 26 1 -0.3933 0.4416 -0.7650 27 1 1.7923 -0.5138 0.8900 28 1 1.5879 2.4585 -1.2243 29 1 1.5615 2.4679 1.2084 30 1 0.9680 -2.5529 -0.7410 31 1 2.7161 -4.2610 -4.5643 32 1 0.7862 -5.5337 -6.0311 33 1 -0.2165 -6.5834 -4.9386 34 1 2.6728 -8.2439 -7.4620 35 1 1.7688 -6.7285 -7.6963 36 1 -0.1931 -7.1386 -9.2796 37 1 -1.9437 -9.0987 -9.6076 38 1 3.4563 -7.5737 -4.5014 39 1 3.3749 -6.2325 -5.7234 40 1 3.2281 -2.5062 -4.3855 41 1 2.9859 0.9972 -1.9655 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14928172_12335870.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:31:31 Heat of formation + Delta-G solvation = 96.392758 kcal Electronic energy + Delta-G solvation = -26831.557338 eV Core-core repulsion = 22762.770654 eV Total energy + Delta-G solvation = -4068.786684 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 393.047 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -44.16026 -41.74773 -40.61314 -39.42144 -37.83586 -35.86783 -34.58983 -33.61927 -32.86533 -31.94383 -30.45056 -29.53377 -27.07000 -26.79909 -26.01036 -24.15277 -23.54032 -22.83152 -22.28339 -21.62232 -20.61309 -19.16666 -18.68244 -17.97116 -17.80585 -17.47247 -17.15968 -16.55174 -16.44749 -16.37900 -16.07738 -15.79734 -15.75044 -15.15359 -15.01123 -14.96586 -14.67957 -14.27267 -14.12110 -13.67332 -13.49667 -13.29672 -13.08834 -13.03547 -12.69745 -12.41362 -12.31126 -12.01864 -11.96343 -11.84819 -11.82953 -11.60332 -11.45409 -11.21926 -10.92049 -10.73589 -10.38775 -10.31815 -10.10419 -9.90095 -4.98396 -0.52485 -0.16301 0.43893 0.69946 1.19548 1.49435 1.52981 1.54209 1.63493 1.89847 1.98140 2.44797 3.24024 3.28560 3.32967 3.37623 3.44595 3.52691 3.68571 3.72167 3.80778 3.87120 3.96076 3.99868 4.07110 4.20430 4.28109 4.32913 4.35524 4.40617 4.53548 4.60484 4.65740 4.72627 4.76021 4.81666 4.92549 4.93548 5.00851 5.06907 5.13835 5.28125 5.36168 5.47921 5.73029 6.36032 6.40822 7.03300 7.54879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.546 6.546 2 C -0.085 4.085 3 Si 0.764 3.236 4 C -0.114 4.114 5 C -0.032 4.032 6 C -0.136 4.136 7 C 0.559 3.441 8 O -0.577 6.577 9 N -0.696 5.696 10 C 0.115 3.885 11 H 0.089 0.911 12 C -0.144 4.144 13 C -0.120 4.120 14 H 0.084 0.916 15 C 0.119 3.881 16 N -0.284 5.284 17 C -0.033 4.033 18 C -0.075 4.075 19 N -0.323 5.323 20 N -0.128 5.128 21 C -0.112 4.112 22 C -0.041 4.041 23 C -0.099 4.099 24 Br -0.026 7.026 25 C -0.061 4.061 26 H 0.388 0.612 27 H 0.130 0.870 28 H -0.272 1.272 29 H -0.299 1.299 30 H 0.127 0.873 31 H 0.418 0.582 32 H 0.114 0.886 33 H 0.045 0.955 34 H 0.117 0.883 35 H 0.149 0.851 36 H 0.236 0.764 37 H 0.209 0.791 38 H 0.086 0.914 39 H 0.129 0.871 40 H 0.168 0.832 41 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.816 7.582 -6.248 12.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.355 6.355 2 C -0.194 4.194 3 Si 0.667 3.333 4 C -0.115 4.115 5 C -0.052 4.052 6 C -0.140 4.140 7 C 0.347 3.653 8 O -0.458 6.458 9 N -0.347 5.347 10 C 0.010 3.990 11 H 0.107 0.893 12 C -0.182 4.182 13 C -0.140 4.140 14 H 0.102 0.898 15 C 0.000 4.000 16 N -0.078 5.078 17 C -0.185 4.185 18 C -0.233 4.233 19 N -0.188 5.188 20 N -0.107 5.107 21 C -0.151 4.151 22 C -0.061 4.061 23 C -0.178 4.178 24 Br 0.060 6.940 25 C -0.080 4.080 26 H 0.237 0.763 27 H 0.147 0.853 28 H -0.198 1.198 29 H -0.227 1.227 30 H 0.145 0.855 31 H 0.258 0.742 32 H 0.132 0.868 33 H 0.064 0.936 34 H 0.135 0.865 35 H 0.167 0.833 36 H 0.252 0.748 37 H 0.225 0.775 38 H 0.105 0.895 39 H 0.148 0.852 40 H 0.185 0.815 41 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 7.946 6.835 -4.645 11.464 hybrid contribution -1.819 0.351 -0.765 2.004 sum 6.127 7.185 -5.409 10.883 Atomic orbital electron populations 1.86615 1.18234 1.80364 1.50242 1.25322 0.83684 1.12169 0.98188 0.94190 0.90173 0.71573 0.77332 1.20246 0.99400 0.94224 0.97663 1.21253 0.94920 0.93603 0.95375 1.19861 1.02805 0.93658 0.97681 1.18427 0.79085 0.86415 0.81394 1.90815 1.39544 1.68160 1.47235 1.45728 1.52752 1.12620 1.23637 1.22465 0.97476 0.81159 0.97850 0.89284 1.23613 0.97775 0.98128 0.98727 1.22563 0.99086 0.98446 0.93908 0.89792 1.22603 0.85470 0.97862 0.94058 1.47845 1.22865 1.12592 1.24484 1.24402 0.93495 1.04431 0.96147 1.24230 1.04322 0.91889 1.02826 1.75086 1.08214 1.27269 1.08259 1.78221 1.11399 0.98714 1.22355 1.23323 0.95349 0.98801 0.97611 1.21476 0.93821 0.92271 0.98513 1.21745 1.02987 0.95866 0.97239 1.96869 1.65436 1.75384 1.56351 1.21382 0.94478 1.00558 0.91615 0.76280 0.85277 1.19806 1.22667 0.85477 0.74233 0.86751 0.93597 0.86509 0.83286 0.74757 0.77473 0.89512 0.85247 0.81508 0.82648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.92 12.76 -148.98 -1.90 -2.82 16 2 C -0.09 0.19 2.82 71.24 0.20 0.39 16 3 Si 0.76 -3.23 29.78 68.60 2.04 -1.19 16 4 C -0.11 0.25 5.39 -19.90 -0.11 0.14 16 5 C -0.03 -0.05 9.15 22.53 0.21 0.16 16 6 C -0.14 0.11 5.87 -20.09 -0.12 -0.01 16 7 C 0.56 1.42 7.77 86.78 0.67 2.10 16 8 O -0.58 -7.31 15.95 -3.87 -0.06 -7.37 16 9 N -0.70 3.95 5.31 -442.91 -2.35 1.59 16 10 C 0.12 -0.51 4.24 45.52 0.19 -0.32 16 11 H 0.09 0.23 7.46 -2.39 -0.02 0.21 16 12 C -0.14 0.81 7.43 31.12 0.23 1.04 16 13 C -0.12 0.86 3.84 -10.27 -0.04 0.82 16 14 H 0.08 -0.04 7.92 -2.39 -0.02 -0.06 16 15 C 0.12 -1.22 6.29 86.38 0.54 -0.68 16 16 N -0.28 0.24 3.44 -347.73 -1.20 -0.96 16 17 C -0.03 0.13 11.57 83.49 0.97 1.10 16 18 C -0.07 -0.20 12.05 83.73 1.01 0.81 16 19 N -0.32 -3.79 12.41 -58.26 -0.72 -4.52 16 20 N -0.13 -1.18 12.77 37.02 0.47 -0.71 16 21 C -0.11 1.27 7.39 31.12 0.23 1.50 16 22 C -0.04 0.25 9.28 22.55 0.21 0.46 16 23 C -0.10 0.50 6.22 22.27 0.14 0.64 16 24 Br -0.03 0.14 33.69 -20.37 -0.69 -0.54 16 25 C -0.06 0.28 8.41 22.34 0.19 0.47 16 26 H 0.39 -1.69 8.70 -74.06 -0.64 -2.33 16 27 H 0.13 -0.44 7.96 -2.38 -0.02 -0.46 16 28 H -0.27 0.39 7.11 99.48 0.71 1.09 16 29 H -0.30 -1.18 7.11 99.48 0.71 -0.48 16 30 H 0.13 0.71 7.65 -2.91 -0.02 0.68 16 31 H 0.42 -5.58 6.76 -92.71 -0.63 -6.20 16 32 H 0.11 -1.23 7.90 -2.38 -0.02 -1.25 16 33 H 0.05 0.06 8.14 -2.39 -0.02 0.04 16 34 H 0.12 -1.42 8.14 -2.38 -0.02 -1.44 16 35 H 0.15 -2.75 7.77 -2.39 -0.02 -2.77 16 36 H 0.24 -3.40 8.06 -2.91 -0.02 -3.42 16 37 H 0.21 -0.70 8.06 -2.91 -0.02 -0.73 16 38 H 0.09 -0.87 8.14 -2.39 -0.02 -0.89 16 39 H 0.13 -2.34 8.08 -2.39 -0.02 -2.36 16 40 H 0.17 -2.17 6.41 -2.91 -0.02 -2.19 16 41 H 0.16 -1.20 4.86 -2.91 -0.01 -1.22 16 Total: 0.00 -31.65 370.04 -0.01 -31.66 By element: Atomic # 1 Polarization: -23.65 SS G_CDS: -0.13 Total: -23.77 kcal Atomic # 6 Polarization: 4.11 SS G_CDS: 4.53 Total: 8.63 kcal Atomic # 7 Polarization: -0.79 SS G_CDS: -3.80 Total: -4.59 kcal Atomic # 8 Polarization: -8.23 SS G_CDS: -1.96 Total: -10.20 kcal Atomic # 14 Polarization: -3.23 SS G_CDS: 2.04 Total: -1.19 kcal Atomic # 35 Polarization: 0.14 SS G_CDS: -0.69 Total: -0.54 kcal Total: -31.65 -0.01 -31.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14928172_12335870.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.052 kcal (2) G-P(sol) polarization free energy of solvation -31.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds