Wall clock time and date at job start Sun Mar 7 2021 00:32:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86291 * 109.47292 * 2 1 4 4 C 1.50698 * 109.47555 * 120.00423 * 2 1 3 5 5 C 1.38334 * 119.87314 * 64.99326 * 4 2 1 6 6 C 1.38004 * 120.12636 * 180.02562 * 5 4 2 7 7 C 1.39395 * 119.87222 * 359.97438 * 6 5 4 8 8 C 1.48281 * 120.12558 * 180.02562 * 7 6 5 9 9 C 1.39509 * 119.97146 * 180.02562 * 8 7 6 10 10 C 1.37670 * 120.01823 * 180.02562 * 9 8 7 11 11 C 1.39704 * 119.97964 * 359.97438 * 10 9 8 12 12 C 1.47716 * 120.02529 * 179.97438 * 11 10 9 13 13 O 1.21565 * 120.00009 * 0.02562 * 12 11 10 14 14 N 1.34781 * 120.00194 * 179.97438 * 12 11 10 15 15 C 1.46493 * 120.00279 * 180.02562 * 14 12 11 16 16 H 1.09003 * 112.84820 * 336.19884 * 15 14 12 17 17 C 1.53781 * 113.61563 * 107.50461 * 15 14 12 18 18 C 1.54049 * 87.08031 * 139.97721 * 17 15 14 19 19 H 1.09000 * 113.61076 * 89.06984 * 18 17 15 20 20 C 1.52990 * 113.70090 * 220.05426 * 18 17 15 21 21 N 1.46497 * 109.47171 * 272.42414 * 20 18 17 22 22 C 1.35315 * 125.87107 * 124.71147 * 21 20 18 23 23 C 1.35355 * 106.17686 * 179.90568 * 22 21 20 24 24 N 1.33767 * 106.49452 * 0.35198 * 23 22 21 25 25 N 1.28631 * 108.88739 * 359.77311 * 24 23 22 26 26 C 1.53781 * 113.61552 * 205.00255 * 15 14 12 27 27 C 1.39708 * 119.94992 * 0.25138 * 11 10 9 28 28 C 1.37664 * 119.97485 * 359.46797 * 27 11 10 29 29 C 1.39398 * 119.74675 * 0.27842 * 7 6 5 30 30 C 1.38001 * 119.87401 * 359.46957 * 29 7 6 31 31 H 0.96701 * 113.99451 * 299.99554 * 1 2 3 32 32 H 1.09009 * 109.46826 * 239.99778 * 2 1 3 33 33 H 1.48507 * 110.00041 * 300.00337 * 3 2 1 34 34 H 1.48498 * 109.99864 * 61.32024 * 3 2 1 35 35 H 1.08002 * 119.93484 * 359.97438 * 5 4 2 36 36 H 1.08002 * 120.06173 * 179.97438 * 6 5 4 37 37 H 1.07997 * 119.99252 * 0.02562 * 9 8 7 38 38 H 1.07997 * 120.00745 * 180.02562 * 10 9 8 39 39 H 0.97006 * 119.99341 * 0.02562 * 14 12 11 40 40 H 1.09005 * 113.61471 * 254.53304 * 17 15 14 41 41 H 1.09003 * 113.61469 * 25.43082 * 17 15 14 42 42 H 1.09007 * 109.47036 * 32.41747 * 20 18 17 43 43 H 1.08994 * 109.47734 * 152.42153 * 20 18 17 44 44 H 1.08004 * 126.91148 * 0.02562 * 22 21 20 45 45 H 1.08002 * 126.75030 * 180.12478 * 23 22 21 46 46 H 1.09002 * 113.61445 * 334.56837 * 26 15 14 47 47 H 1.09002 * 113.61408 * 105.38567 * 26 15 14 48 48 H 1.07999 * 120.01146 * 179.72272 * 27 11 10 49 49 H 1.08005 * 119.98973 * 180.27211 * 28 27 11 50 50 H 1.08004 * 120.06473 * 179.72525 * 29 7 6 51 51 H 1.07997 * 119.94225 * 180.27706 * 30 29 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7105 1.2304 5 6 1.6831 -2.0613 1.3957 6 6 2.1403 -2.7170 2.5206 7 6 2.8541 -2.0156 3.4911 8 6 3.3485 -2.7147 4.7017 9 6 4.0620 -2.0095 5.6711 10 6 4.5219 -2.6577 6.7953 11 6 4.2734 -4.0219 6.9652 12 6 4.7669 -4.7185 8.1707 13 8 5.3891 -4.1046 9.0156 14 7 4.5264 -6.0346 8.3345 15 6 5.0153 -6.7253 9.5302 16 1 5.8693 -6.2260 9.9880 17 6 3.9041 -7.0894 10.5290 18 6 4.6401 -8.4261 10.7398 19 1 5.3912 -8.3912 11.5290 20 6 3.7048 -9.6308 10.8607 21 7 3.3010 -9.7971 12.2591 22 6 2.0284 -9.8464 12.7164 23 6 2.1156 -10.0102 14.0572 24 7 3.4200 -10.0447 14.3515 25 7 4.0957 -9.9159 13.2646 26 6 5.2205 -8.2360 9.3284 27 6 3.5628 -4.7281 5.9915 28 6 3.0988 -4.0767 4.8709 29 6 3.0967 -0.6534 3.3216 30 6 2.6392 -0.0093 2.1902 31 1 -0.3932 0.4417 0.7651 32 1 1.7923 -0.5139 -0.8901 33 1 1.5615 2.4679 -1.2085 34 1 1.5880 2.4584 1.2242 35 1 1.1296 -2.6035 0.6433 36 1 1.9455 -3.7715 2.6488 37 1 4.2537 -0.9548 5.5398 38 1 5.0739 -2.1115 7.5458 39 1 4.0296 -6.5243 7.6604 40 1 3.8885 -6.4549 11.4152 41 1 2.9222 -7.1995 10.0687 42 1 2.8207 -9.4676 10.2442 43 1 4.2227 -10.5283 10.5229 44 1 1.1248 -9.7722 12.1294 45 1 1.2937 -10.0927 14.7529 46 1 4.5985 -8.6596 8.5399 47 1 6.2675 -8.5270 9.2439 48 1 3.3740 -5.7837 6.1197 49 1 2.5457 -4.6215 4.1201 50 1 3.6454 -0.1041 4.0724 51 1 2.8305 1.0451 2.0556 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14928172_13158362.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:32:15 Heat of formation + Delta-G solvation = 119.660206 kcal Electronic energy + Delta-G solvation = -33278.824584 eV Core-core repulsion = 28726.885055 eV Total energy + Delta-G solvation = -4551.939529 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 391.168 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -44.15652 -41.61042 -40.89115 -39.98822 -39.01834 -37.63622 -35.84236 -34.60893 -33.80536 -32.55262 -31.94001 -31.57522 -30.90269 -29.43281 -27.08580 -26.78166 -25.21919 -24.66055 -24.02956 -23.54664 -22.62988 -22.52005 -21.97401 -21.38269 -20.65526 -19.20130 -18.66912 -18.44354 -17.85209 -17.61130 -17.10877 -16.80792 -16.50461 -16.31528 -16.12043 -16.04412 -15.96390 -15.75428 -15.42653 -15.11434 -15.03492 -14.95671 -14.87419 -14.65870 -14.29266 -14.23267 -14.04392 -13.63932 -13.55157 -13.47942 -13.24780 -13.01674 -12.78171 -12.68753 -12.59553 -12.39583 -12.07315 -12.01631 -11.92767 -11.82390 -11.58481 -11.52444 -11.13811 -10.89053 -10.77117 -10.59304 -10.31496 -10.14172 -10.05777 -9.94590 -9.07543 -4.93662 -0.68966 0.35551 0.41218 0.50215 0.70290 1.29841 1.52673 1.57483 1.63995 1.76841 1.94219 2.06059 2.60153 3.00832 3.30613 3.38166 3.38410 3.45671 3.52281 3.63193 3.65611 3.70112 3.73496 3.80514 3.88498 3.99995 4.02163 4.04801 4.08520 4.27476 4.28954 4.31774 4.35915 4.37804 4.40831 4.55063 4.60685 4.65267 4.65959 4.68769 4.74254 4.81913 4.90497 4.92373 4.94689 5.01214 5.09279 5.12690 5.16957 5.21405 5.27205 5.28779 5.42276 5.50097 5.50929 5.66071 5.73429 5.80295 5.94019 6.45506 6.46240 7.12662 7.55341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.548 6.548 2 C -0.081 4.081 3 Si 0.760 3.240 4 C -0.115 4.115 5 C -0.101 4.101 6 C -0.106 4.106 7 C -0.059 4.059 8 C -0.023 4.023 9 C -0.124 4.124 10 C -0.073 4.073 11 C -0.153 4.153 12 C 0.555 3.445 13 O -0.586 6.586 14 N -0.697 5.697 15 C 0.114 3.886 16 H 0.086 0.914 17 C -0.143 4.143 18 C -0.120 4.120 19 H 0.083 0.917 20 C 0.120 3.880 21 N -0.283 5.283 22 C -0.033 4.033 23 C -0.074 4.074 24 N -0.324 5.324 25 N -0.128 5.128 26 C -0.112 4.112 27 C -0.071 4.071 28 C -0.119 4.119 29 C -0.109 4.109 30 C -0.122 4.122 31 H 0.386 0.614 32 H 0.127 0.873 33 H -0.305 1.305 34 H -0.283 1.283 35 H 0.134 0.866 36 H 0.149 0.851 37 H 0.145 0.855 38 H 0.124 0.876 39 H 0.419 0.581 40 H 0.044 0.956 41 H 0.114 0.886 42 H 0.150 0.850 43 H 0.117 0.883 44 H 0.236 0.764 45 H 0.209 0.791 46 H 0.129 0.871 47 H 0.085 0.915 48 H 0.164 0.836 49 H 0.159 0.841 50 H 0.143 0.857 51 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.294 -3.614 -8.758 10.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.356 6.356 2 C -0.190 4.190 3 Si 0.667 3.333 4 C -0.116 4.116 5 C -0.119 4.119 6 C -0.124 4.124 7 C -0.060 4.060 8 C -0.023 4.023 9 C -0.142 4.142 10 C -0.092 4.092 11 C -0.156 4.156 12 C 0.344 3.656 13 O -0.467 6.467 14 N -0.349 5.349 15 C 0.009 3.991 16 H 0.104 0.896 17 C -0.182 4.182 18 C -0.140 4.140 19 H 0.101 0.899 20 C 0.001 3.999 21 N -0.078 5.078 22 C -0.185 4.185 23 C -0.232 4.232 24 N -0.189 5.189 25 N -0.107 5.107 26 C -0.150 4.150 27 C -0.089 4.089 28 C -0.137 4.137 29 C -0.126 4.126 30 C -0.140 4.140 31 H 0.235 0.765 32 H 0.144 0.856 33 H -0.233 1.233 34 H -0.210 1.210 35 H 0.152 0.848 36 H 0.167 0.833 37 H 0.163 0.837 38 H 0.142 0.858 39 H 0.258 0.742 40 H 0.063 0.937 41 H 0.133 0.867 42 H 0.168 0.832 43 H 0.135 0.865 44 H 0.253 0.747 45 H 0.225 0.775 46 H 0.148 0.852 47 H 0.103 0.897 48 H 0.181 0.819 49 H 0.176 0.824 50 H 0.161 0.839 51 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -2.461 -2.757 -8.267 9.055 hybrid contribution -2.102 0.193 0.405 2.150 sum -4.564 -2.564 -7.862 9.445 Atomic orbital electron populations 1.86580 1.18475 1.80324 1.50186 1.25183 0.83424 1.11488 0.98910 0.94084 0.90494 0.72524 0.76231 1.20439 0.99288 0.95155 0.96701 1.21129 0.98891 0.93864 0.97966 1.21532 0.96746 1.01094 0.92994 1.18939 0.99205 0.93765 0.94042 1.19159 0.95984 0.94093 0.93055 1.21371 0.98388 1.01199 0.93195 1.21254 0.97028 0.93657 0.97308 1.19991 1.04451 0.95087 0.96043 1.18649 0.78486 0.82728 0.85728 1.90783 1.42826 1.67295 1.45821 1.45716 1.56921 1.08353 1.23892 1.22429 0.97447 0.93154 0.86037 0.89561 1.23659 0.99689 0.95947 0.98899 1.22612 0.98424 0.93474 0.99529 0.89854 1.22592 1.02509 1.00532 0.74308 1.47842 1.05346 1.44513 1.10066 1.24412 0.90468 1.07260 0.96370 1.24228 0.95115 1.07519 0.96339 1.75081 1.05937 1.18161 1.19693 1.78220 1.20868 1.21270 0.90350 1.23312 1.03620 0.92319 0.95790 1.21492 0.94443 1.00983 0.91997 1.21497 1.00269 0.93368 0.98548 1.21464 0.99404 0.93817 0.97950 1.21163 0.98475 1.00386 0.93951 0.76510 0.85568 1.23346 1.21003 0.84809 0.83342 0.83699 0.85834 0.74183 0.93698 0.86746 0.83239 0.86481 0.74742 0.77453 0.85240 0.89657 0.81894 0.82387 0.83913 0.84182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.50 12.83 -148.98 -1.91 -2.41 16 2 C -0.08 0.19 2.80 71.24 0.20 0.39 16 3 Si 0.76 -2.22 29.87 68.60 2.05 -0.17 16 4 C -0.12 0.26 5.36 -19.82 -0.11 0.16 16 5 C -0.10 0.25 9.67 22.24 0.21 0.47 16 6 C -0.11 0.40 9.43 22.49 0.21 0.61 16 7 C -0.06 0.13 5.88 -20.05 -0.12 0.01 16 8 C -0.02 0.05 5.88 -19.99 -0.12 -0.07 16 9 C -0.12 0.08 9.41 22.44 0.21 0.29 16 10 C -0.07 -0.19 9.58 22.49 0.22 0.02 16 11 C -0.15 -0.10 5.88 -20.06 -0.12 -0.21 16 12 C 0.56 2.22 7.77 86.75 0.67 2.89 16 13 O -0.59 -8.28 15.93 -3.92 -0.06 -8.35 16 14 N -0.70 3.24 5.30 -443.04 -2.35 0.89 16 15 C 0.11 -0.40 4.24 45.52 0.19 -0.20 16 16 H 0.09 0.33 7.46 -2.39 -0.02 0.31 16 17 C -0.14 0.71 7.44 31.21 0.23 0.94 16 18 C -0.12 0.80 3.85 -10.18 -0.04 0.76 16 19 H 0.08 0.01 7.91 -2.39 -0.02 -0.01 16 20 C 0.12 -1.20 6.30 86.38 0.54 -0.66 16 21 N -0.28 0.19 3.44 -347.75 -1.20 -1.01 16 22 C -0.03 0.13 11.57 83.49 0.97 1.09 16 23 C -0.07 -0.20 12.05 83.73 1.01 0.81 16 24 N -0.32 -3.84 12.41 -58.26 -0.72 -4.57 16 25 N -0.13 -1.20 12.76 37.02 0.47 -0.73 16 26 C -0.11 1.19 7.39 31.12 0.23 1.42 16 27 C -0.07 0.45 9.52 22.49 0.21 0.66 16 28 C -0.12 0.69 9.41 22.44 0.21 0.90 16 29 C -0.11 0.29 9.43 22.49 0.21 0.50 16 30 C -0.12 0.37 8.65 22.24 0.19 0.56 16 31 H 0.39 -1.69 8.70 -74.06 -0.64 -2.33 16 32 H 0.13 -0.51 7.96 -2.38 -0.02 -0.53 16 33 H -0.31 -1.60 7.11 99.48 0.71 -0.89 16 34 H -0.28 -0.23 7.00 99.48 0.70 0.46 16 35 H 0.13 -0.51 8.06 -2.91 -0.02 -0.54 16 36 H 0.15 -1.28 6.19 -2.91 -0.02 -1.29 16 37 H 0.15 -0.59 6.19 -2.91 -0.02 -0.61 16 38 H 0.12 0.61 7.64 -2.91 -0.02 0.59 16 39 H 0.42 -5.33 6.74 -92.70 -0.63 -5.96 16 40 H 0.04 0.09 8.14 -2.38 -0.02 0.07 16 41 H 0.11 -1.17 7.90 -2.39 -0.02 -1.18 16 42 H 0.15 -2.74 7.78 -2.38 -0.02 -2.76 16 43 H 0.12 -1.41 8.14 -2.39 -0.02 -1.43 16 44 H 0.24 -3.38 8.06 -2.91 -0.02 -3.41 16 45 H 0.21 -0.70 8.06 -2.91 -0.02 -0.72 16 46 H 0.13 -2.28 8.08 -2.39 -0.02 -2.30 16 47 H 0.08 -0.80 8.14 -2.39 -0.02 -0.82 16 48 H 0.16 -2.35 6.39 -2.91 -0.02 -2.37 16 49 H 0.16 -1.76 6.19 -2.91 -0.02 -1.78 16 50 H 0.14 -0.84 6.19 -2.91 -0.02 -0.86 16 51 H 0.14 -0.83 4.82 -2.91 -0.01 -0.84 16 Total: 0.00 -35.45 422.88 1.28 -34.18 By element: Atomic # 1 Polarization: -28.95 SS G_CDS: -0.23 Total: -29.19 kcal Atomic # 6 Polarization: 6.12 SS G_CDS: 5.23 Total: 11.35 kcal Atomic # 7 Polarization: -1.62 SS G_CDS: -3.80 Total: -5.41 kcal Atomic # 8 Polarization: -8.78 SS G_CDS: -1.97 Total: -10.76 kcal Atomic # 14 Polarization: -2.22 SS G_CDS: 2.05 Total: -0.17 kcal Total: -35.45 1.28 -34.18 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14928172_13158362.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.836 kcal (2) G-P(sol) polarization free energy of solvation -35.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.176 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds