Wall clock time and date at job start Sun Mar 7 2021 00:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86296 * 109.47062 * 2 1 4 4 C 1.50699 * 109.47319 * 119.99959 * 2 1 3 5 5 C 1.38897 * 119.67918 * 245.00341 * 4 2 1 6 6 C 1.36468 * 120.61790 * 180.02562 * 5 4 2 7 7 C 1.40066 * 119.83045 * 359.96821 * 6 5 4 8 8 C 1.41588 * 133.38292 * 179.97438 * 7 6 5 9 9 C 1.35862 * 107.73149 * 180.02562 * 8 7 6 10 10 C 1.47064 * 125.42776 * 180.02562 * 9 8 7 11 11 O 1.21639 * 120.00005 * 359.97438 * 10 9 8 12 12 N 1.34775 * 119.99849 * 179.97438 * 10 9 8 13 13 C 1.46498 * 119.99871 * 179.97438 * 12 10 9 14 14 H 1.08998 * 112.84766 * 23.81274 * 13 12 10 15 15 C 1.53787 * 113.61259 * 155.00381 * 13 12 10 16 16 C 1.53775 * 87.07963 * 139.98357 * 15 13 12 17 17 H 1.09006 * 113.61770 * 89.19940 * 16 15 13 18 18 C 1.52999 * 113.61509 * 220.02005 * 16 15 13 19 19 N 1.46495 * 109.47327 * 185.00213 * 18 16 15 20 20 C 1.35319 * 125.87355 * 124.71422 * 19 18 16 21 21 C 1.35345 * 106.17653 * 179.90688 * 20 19 18 22 22 N 1.33769 * 106.50082 * 0.34614 * 21 20 19 23 23 N 1.28635 * 108.88202 * 359.78075 * 22 21 20 24 24 C 1.53781 * 87.08578 * 334.56632 * 16 15 13 25 25 N 1.38146 * 109.14648 * 0.02562 * 9 8 7 26 26 C 1.37495 * 108.79143 * 359.97438 * 25 9 8 27 27 C 1.37716 * 119.67370 * 64.73117 * 4 2 1 28 28 H 0.96703 * 113.99900 * 299.99615 * 1 2 3 29 29 H 1.09003 * 109.47013 * 239.99802 * 2 1 3 30 30 H 1.48501 * 110.00019 * 299.99928 * 3 2 1 31 31 H 1.48497 * 110.00303 * 61.31930 * 3 2 1 32 32 H 1.08004 * 119.69012 * 0.02562 * 5 4 2 33 33 H 1.08002 * 120.08649 * 179.97438 * 6 5 4 34 34 H 1.08002 * 126.13679 * 0.02955 * 8 7 6 35 35 H 0.97005 * 120.00347 * 0.02562 * 12 10 9 36 36 H 1.09003 * 113.61240 * 254.53107 * 15 13 12 37 37 H 1.08997 * 113.61429 * 25.43294 * 15 13 12 38 38 H 1.09008 * 109.46989 * 304.99962 * 18 16 15 39 39 H 1.08997 * 109.47248 * 64.99984 * 18 16 15 40 40 H 1.08001 * 126.90489 * 0.02562 * 20 19 18 41 41 H 1.08003 * 126.74850 * 180.12643 * 21 20 19 42 42 H 1.08999 * 113.61484 * 270.89086 * 24 16 15 43 43 H 1.09000 * 113.61495 * 139.97831 * 24 16 15 44 44 H 0.97000 * 125.60614 * 179.97438 * 25 9 8 45 45 H 1.08004 * 120.09519 * 359.97438 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 2.6414 -0.0024 2.1916 6 6 3.1056 -0.6266 3.3129 7 6 2.8649 -1.9937 3.4994 8 6 3.2031 -2.9097 4.5248 9 6 2.7043 -4.1243 4.1756 10 6 2.8321 -5.3577 4.9664 11 8 3.4250 -5.3406 6.0283 12 7 2.2922 -6.5068 4.5144 13 6 2.4199 -7.7356 5.3018 14 1 2.5818 -7.5436 6.3624 15 6 1.3101 -8.7633 5.0241 16 6 2.3999 -9.8451 5.1059 17 1 2.5564 -10.2320 6.1129 18 6 2.2440 -10.9523 4.0616 19 7 3.2516 -11.9896 4.2955 20 6 3.0051 -13.3074 4.4796 21 6 4.2112 -13.8954 4.6571 22 7 5.1240 -12.9205 4.5816 23 7 4.5233 -11.8035 4.3668 24 6 3.4039 -8.7531 4.7006 25 7 2.0580 -4.0161 2.9595 26 6 2.1448 -2.7141 2.5261 27 6 1.6771 -2.0540 1.3935 28 1 -0.3933 0.4417 0.7651 29 1 1.7923 -0.5139 -0.8900 30 1 1.5614 2.4679 -1.2085 31 1 1.5879 2.4586 1.2242 32 1 2.8278 1.0520 2.0503 33 1 3.6571 -0.0679 4.0545 34 1 3.7580 -2.6835 5.4233 35 1 1.8196 -6.5205 3.6673 36 1 0.5679 -8.8301 5.8197 37 1 0.8636 -8.6672 4.0344 38 1 1.2482 -11.3887 4.1405 39 1 2.3789 -10.5330 3.0646 40 1 2.0402 -13.7925 4.4822 41 1 4.3993 -14.9448 4.8296 42 1 3.5299 -8.6541 3.6225 43 1 4.3521 -8.8116 5.2350 44 1 1.6157 -4.7397 2.4886 45 1 1.1199 -2.5948 0.6428 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14928172_13158378.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:32:20 Heat of formation + Delta-G solvation = 125.120829 kcal Electronic energy + Delta-G solvation = -29323.458903 eV Core-core repulsion = 25118.320153 eV Total energy + Delta-G solvation = -4205.138750 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 354.148 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -44.16008 -42.73539 -41.18141 -39.71563 -38.93303 -36.98398 -35.87868 -34.44604 -33.29567 -31.93499 -31.20787 -30.43321 -29.56136 -27.09664 -26.78389 -25.20008 -24.00802 -23.52559 -23.11819 -22.22898 -21.93152 -21.48889 -20.78877 -19.47862 -18.66524 -18.50375 -17.92928 -17.46750 -16.94371 -16.86486 -16.55802 -16.24678 -16.18692 -15.86422 -15.66229 -15.55334 -15.35759 -15.10774 -14.92539 -14.72467 -14.54088 -14.31743 -14.06448 -13.79599 -13.51205 -13.23813 -13.16857 -12.63380 -12.56579 -12.54236 -12.37806 -12.09041 -12.03983 -11.94084 -11.55294 -11.49885 -11.35351 -11.01386 -10.98225 -10.60201 -10.31849 -10.27553 -9.35309 -8.84776 -4.86420 -0.39796 0.51500 0.69518 0.91503 1.34154 1.51166 1.63628 1.64768 1.72409 1.94853 2.01558 2.13091 2.74993 3.25961 3.38047 3.42395 3.50072 3.60820 3.62458 3.66811 3.72052 3.73115 3.99511 4.02661 4.12986 4.22226 4.24263 4.28311 4.33505 4.35776 4.44572 4.51505 4.62203 4.64586 4.68255 4.73764 4.83010 4.86888 4.91513 4.97624 5.01009 5.05610 5.27971 5.28318 5.39157 5.43683 5.52715 5.55857 5.72952 5.96552 6.23314 6.41871 6.50788 6.92190 7.55460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.547 6.547 2 C -0.078 4.078 3 Si 0.766 3.234 4 C -0.086 4.086 5 C -0.149 4.149 6 C -0.060 4.060 7 C -0.135 4.135 8 C -0.121 4.121 9 C 0.011 3.989 10 C 0.585 3.415 11 O -0.563 6.563 12 N -0.699 5.699 13 C 0.114 3.886 14 H 0.096 0.904 15 C -0.109 4.109 16 C -0.114 4.114 17 H 0.088 0.912 18 C 0.118 3.882 19 N -0.286 5.286 20 C -0.035 4.035 21 C -0.074 4.074 22 N -0.325 5.325 23 N -0.121 5.121 24 C -0.142 4.142 25 N -0.562 5.562 26 C 0.108 3.892 27 C -0.107 4.107 28 H 0.386 0.614 29 H 0.129 0.871 30 H -0.305 1.305 31 H -0.283 1.283 32 H 0.144 0.856 33 H 0.145 0.855 34 H 0.152 0.848 35 H 0.414 0.586 36 H 0.095 0.905 37 H 0.124 0.876 38 H 0.151 0.849 39 H 0.115 0.885 40 H 0.236 0.764 41 H 0.209 0.791 42 H 0.097 0.903 43 H 0.047 0.953 44 H 0.432 0.568 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.743 -2.342 -3.882 8.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.356 6.356 2 C -0.187 4.187 3 Si 0.672 3.328 4 C -0.088 4.088 5 C -0.167 4.167 6 C -0.078 4.078 7 C -0.139 4.139 8 C -0.148 4.148 9 C -0.099 4.099 10 C 0.372 3.628 11 O -0.441 6.441 12 N -0.350 5.350 13 C 0.009 3.991 14 H 0.114 0.886 15 C -0.148 4.148 16 C -0.134 4.134 17 H 0.107 0.893 18 C -0.001 4.001 19 N -0.081 5.081 20 C -0.186 4.186 21 C -0.232 4.232 22 N -0.190 5.190 23 N -0.100 5.100 24 C -0.181 4.181 25 N -0.168 5.168 26 C -0.002 4.002 27 C -0.127 4.127 28 H 0.236 0.764 29 H 0.146 0.854 30 H -0.234 1.234 31 H -0.209 1.209 32 H 0.162 0.838 33 H 0.163 0.837 34 H 0.170 0.830 35 H 0.251 0.749 36 H 0.113 0.887 37 H 0.142 0.858 38 H 0.168 0.832 39 H 0.133 0.867 40 H 0.253 0.747 41 H 0.225 0.775 42 H 0.116 0.884 43 H 0.066 0.934 44 H 0.273 0.727 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -6.371 -0.949 -3.770 7.464 hybrid contribution -1.906 -1.265 0.305 2.308 sum -8.277 -2.214 -3.465 9.242 Atomic orbital electron populations 1.86573 1.18386 1.80378 1.50225 1.25182 0.83452 1.11596 0.98481 0.93901 0.90513 0.72245 0.76174 1.20071 0.98542 0.93538 0.96662 1.20720 1.00941 1.00563 0.94490 1.20615 0.97762 0.91736 0.97717 1.18439 1.04352 0.95098 0.96051 1.21104 1.02671 0.90799 1.00207 1.19958 1.05123 0.95456 0.89324 1.17362 0.78423 0.82683 0.84326 1.90863 1.43737 1.85715 1.23827 1.45707 1.56448 1.07816 1.25002 1.22596 0.98414 0.81645 0.96406 0.88602 1.23306 0.95387 0.90547 1.05538 1.22517 0.98305 0.93391 0.99188 0.89321 1.22592 0.90164 0.86340 1.00993 1.47874 1.06842 1.09002 1.44350 1.24433 1.03607 0.83774 1.06811 1.24227 0.89464 1.01970 1.07514 1.75099 1.29507 0.96700 1.17738 1.78273 0.90480 1.20346 1.20939 1.23527 0.97694 0.94817 1.02046 1.41743 1.48364 1.09071 1.17648 1.18439 1.00754 0.84389 0.96656 1.20013 1.02638 0.94101 0.95991 0.76435 0.85374 1.23366 1.20918 0.83836 0.83730 0.82982 0.74865 0.88668 0.85812 0.83165 0.86740 0.74734 0.77466 0.88416 0.93386 0.72665 0.84394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.21 12.82 -148.98 -1.91 -2.12 16 2 C -0.08 0.20 2.79 71.24 0.20 0.40 16 3 Si 0.77 -2.35 29.85 68.60 2.05 -0.30 16 4 C -0.09 0.12 5.36 -19.83 -0.11 0.02 16 5 C -0.15 0.24 8.59 22.01 0.19 0.43 16 6 C -0.06 -0.02 10.06 22.30 0.22 0.20 16 7 C -0.13 -0.45 6.16 -21.36 -0.13 -0.58 16 8 C -0.12 -0.60 10.53 22.54 0.24 -0.36 16 9 C 0.01 0.03 6.97 39.91 0.28 0.31 16 10 C 0.58 2.43 7.80 86.56 0.68 3.10 16 11 O -0.56 -7.53 16.44 -4.15 -0.07 -7.60 16 12 N -0.70 3.05 5.35 -443.64 -2.37 0.68 16 13 C 0.11 -0.45 4.24 45.52 0.19 -0.25 16 14 H 0.10 0.18 7.46 -2.39 -0.02 0.16 16 15 C -0.11 1.34 7.39 31.12 0.23 1.57 16 16 C -0.11 0.91 3.76 -10.27 -0.04 0.87 16 17 H 0.09 -0.37 8.14 -2.38 -0.02 -0.39 16 18 C 0.12 -1.27 6.29 86.38 0.54 -0.73 16 19 N -0.29 0.38 3.44 -347.74 -1.20 -0.82 16 20 C -0.03 0.15 11.57 83.49 0.97 1.12 16 21 C -0.07 -0.16 12.05 83.73 1.01 0.85 16 22 N -0.33 -3.69 12.41 -58.26 -0.72 -4.41 16 23 N -0.12 -1.04 12.93 37.02 0.48 -0.56 16 24 C -0.14 0.39 7.43 31.12 0.23 0.62 16 25 N -0.56 1.65 6.07 -177.18 -1.08 0.57 16 26 C 0.11 0.08 7.25 39.13 0.28 0.37 16 27 C -0.11 0.11 9.68 22.37 0.22 0.32 16 28 H 0.39 -1.83 8.70 -74.06 -0.64 -2.48 16 29 H 0.13 -0.59 7.96 -2.39 -0.02 -0.61 16 30 H -0.31 -1.49 7.11 99.48 0.71 -0.79 16 31 H -0.28 -0.21 7.00 99.48 0.70 0.49 16 32 H 0.14 -0.74 4.78 -2.91 -0.01 -0.76 16 33 H 0.14 -0.46 8.06 -2.91 -0.02 -0.49 16 34 H 0.15 0.77 8.06 -2.91 -0.02 0.75 16 35 H 0.41 -4.89 7.78 -92.70 -0.72 -5.61 16 36 H 0.09 -1.22 8.14 -2.39 -0.02 -1.24 16 37 H 0.12 -2.22 8.08 -2.39 -0.02 -2.24 16 38 H 0.15 -2.78 8.07 -2.38 -0.02 -2.80 16 39 H 0.11 -1.47 7.84 -2.39 -0.02 -1.49 16 40 H 0.24 -3.47 8.06 -2.91 -0.02 -3.49 16 41 H 0.21 -0.79 8.06 -2.91 -0.02 -0.81 16 42 H 0.10 -0.45 7.90 -2.39 -0.02 -0.47 16 43 H 0.05 0.22 8.14 -2.39 -0.02 0.20 16 44 H 0.43 -4.49 8.12 -92.71 -0.75 -5.25 16 45 H 0.14 -0.51 8.06 -2.91 -0.02 -0.54 16 Total: 0.00 -33.50 382.75 -0.64 -34.14 By element: Atomic # 1 Polarization: -26.82 SS G_CDS: -1.02 Total: -27.83 kcal Atomic # 6 Polarization: 3.05 SS G_CDS: 5.20 Total: 8.25 kcal Atomic # 7 Polarization: 0.35 SS G_CDS: -4.89 Total: -4.54 kcal Atomic # 8 Polarization: -7.73 SS G_CDS: -1.98 Total: -9.71 kcal Atomic # 14 Polarization: -2.35 SS G_CDS: 2.05 Total: -0.30 kcal Total: -33.50 -0.64 -34.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14928172_13158378.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.257 kcal (2) G-P(sol) polarization free energy of solvation -33.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds