Wall clock time and date at job start Sun Mar 7 2021 00:32:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42904 * 1 3 3 Si 1.86300 * 109.46953 * 2 1 4 4 C 1.50694 * 109.47419 * 240.00077 * 2 1 3 5 5 C 1.34194 * 126.54286 * 104.95450 * 4 2 1 6 6 N 1.36861 * 109.96980 * 180.02562 * 5 4 2 7 7 C 1.37406 * 109.98036 * 359.78803 * 6 5 4 8 8 C 1.39326 * 133.24531 * 179.52796 * 7 6 5 9 9 C 1.36357 * 120.23221 * 180.36707 * 8 7 6 10 10 C 1.40162 * 120.66847 * 0.27958 * 9 8 7 11 11 C 1.47659 * 119.97024 * 179.97438 * 10 9 8 12 12 O 1.21582 * 119.99505 * 179.97438 * 11 10 9 13 13 N 1.34772 * 120.00318 * 0.02562 * 11 10 9 14 14 C 1.46494 * 120.00242 * 179.97438 * 13 11 10 15 15 H 1.09000 * 112.84909 * 23.80181 * 14 13 11 16 16 C 1.53780 * 113.61535 * 155.00161 * 14 13 11 17 17 C 1.53783 * 87.08326 * 139.98434 * 16 14 13 18 18 H 1.08991 * 113.62004 * 89.20097 * 17 16 14 19 19 C 1.53004 * 113.61184 * 220.02191 * 17 16 14 20 20 N 1.46501 * 109.46962 * 184.99740 * 19 17 16 21 21 C 1.35310 * 125.86939 * 124.99905 * 20 19 17 22 22 C 1.35346 * 106.17819 * 180.02562 * 21 20 19 23 23 N 1.33780 * 106.49550 * 359.97438 * 22 21 20 24 24 N 1.28637 * 108.88166 * 359.73886 * 23 22 21 25 25 C 1.53784 * 113.61480 * 252.49855 * 14 13 11 26 26 C 1.39190 * 120.05470 * 359.97438 * 10 9 8 27 27 C 1.39220 * 119.39610 * 359.97438 * 26 10 9 28 28 H 0.96701 * 113.99528 * 59.99736 * 1 2 3 29 29 H 1.09002 * 109.47058 * 120.00021 * 2 1 3 30 30 H 1.48501 * 110.00224 * 298.67883 * 3 2 1 31 31 H 1.48498 * 110.00010 * 59.99936 * 3 2 1 32 32 H 1.07996 * 125.01267 * 0.07763 * 5 4 2 33 33 H 0.97001 * 125.00919 * 180.02562 * 6 5 4 34 34 H 1.08002 * 119.88683 * 0.65151 * 8 7 6 35 35 H 1.08002 * 119.66116 * 180.25886 * 9 8 7 36 36 H 0.97001 * 119.99932 * 359.97438 * 13 11 10 37 37 H 1.09001 * 113.61271 * 254.53188 * 16 14 13 38 38 H 1.09002 * 113.61696 * 25.34599 * 16 14 13 39 39 H 1.08996 * 109.46969 * 304.99653 * 19 17 16 40 40 H 1.08998 * 109.47298 * 64.99831 * 19 17 16 41 41 H 1.08003 * 126.91011 * 359.97413 * 21 20 19 42 42 H 1.08000 * 126.75488 * 180.02562 * 22 21 20 43 43 H 1.08993 * 113.61359 * 334.56493 * 25 14 13 44 44 H 1.09005 * 113.61598 * 105.47119 * 25 14 13 45 45 H 1.08003 * 120.30165 * 179.97438 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 -1.2304 5 6 2.4601 -0.1386 -2.3233 6 7 2.8019 -1.1003 -3.2350 7 6 2.4994 -2.3457 -2.7396 8 6 2.6326 -3.6348 -3.2512 9 6 2.2294 -4.7102 -2.5162 10 6 1.6715 -4.5368 -1.2422 11 6 1.2395 -5.7122 -0.4598 12 8 0.7560 -5.5624 0.6456 13 7 1.3822 -6.9512 -0.9706 14 6 0.9542 -8.1174 -0.1942 15 1 0.1938 -7.8756 0.5484 16 6 0.6033 -9.3389 -1.0601 17 6 1.3002 -10.1979 0.0083 18 1 0.6348 -10.5270 0.8063 19 6 2.1395 -11.3374 -0.5732 20 7 2.6622 -12.1645 0.5172 21 6 2.4991 -13.5015 0.6463 22 6 3.1387 -13.8510 1.7868 23 7 3.6555 -12.7255 2.2927 24 7 3.3603 -11.7452 1.5139 25 6 2.1217 -8.9476 0.3648 26 6 1.5243 -3.2575 -0.7138 27 6 1.9362 -2.1578 -1.4617 28 1 -0.3932 0.4418 -0.7651 29 1 1.7924 -0.5138 0.8900 30 1 1.5879 2.4586 -1.2242 31 1 1.5614 2.4679 1.2085 32 1 2.5965 0.9237 -2.4623 33 1 3.2022 -0.9283 -4.1017 34 1 3.0609 -3.7831 -4.2315 35 1 2.3407 -5.7056 -2.9201 36 1 1.7684 -7.0708 -1.8524 37 1 -0.4678 -9.5248 -1.1393 38 1 1.1071 -9.3482 -2.0267 39 1 1.5182 -11.9489 -1.2275 40 1 2.9698 -10.9222 -1.1444 41 1 1.9652 -14.1577 -0.0251 42 1 3.2172 -14.8434 2.2056 43 1 3.0417 -8.8507 -0.2117 44 1 2.2765 -8.8177 1.4359 45 1 1.0946 -3.1192 0.2673 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14928172_13287722.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:32:34 Heat of formation + Delta-G solvation = 122.456044 kcal Electronic energy + Delta-G solvation = -29572.495168 eV Core-core repulsion = 25367.240864 eV Total energy + Delta-G solvation = -4205.254303 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 354.148 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.14026 -42.46933 -41.27322 -39.71741 -38.05326 -37.46686 -35.80719 -34.33745 -33.28912 -31.91668 -30.96208 -30.53838 -29.33571 -26.74138 -26.50801 -25.61667 -23.98799 -23.49617 -23.45798 -22.26435 -21.58872 -21.00962 -20.58346 -19.34856 -18.70284 -18.36165 -17.62415 -17.59332 -17.12822 -16.95337 -16.33936 -16.20582 -16.05433 -15.80080 -15.66078 -15.60392 -15.26572 -15.11364 -14.88056 -14.78918 -14.31779 -14.14075 -13.78471 -13.76088 -13.53869 -13.45330 -13.16602 -12.62672 -12.60313 -12.52854 -12.29382 -12.14660 -11.98197 -11.91354 -11.80705 -11.41753 -11.08595 -10.96515 -10.81363 -10.49428 -10.30012 -10.13095 -9.33322 -8.82141 -4.88013 -0.16618 0.20302 0.71828 1.33932 1.50672 1.54114 1.59974 1.65351 1.81736 2.00459 2.09840 2.13855 2.87409 3.30769 3.43124 3.50851 3.56422 3.63192 3.65620 3.73454 3.79324 3.83855 3.90266 4.03224 4.13813 4.16566 4.27271 4.35782 4.36574 4.37448 4.45807 4.53528 4.59825 4.68736 4.70336 4.79037 4.80797 4.86142 4.96733 5.00154 5.05235 5.16650 5.26713 5.29912 5.34772 5.46373 5.55300 5.57076 5.75282 5.98067 6.51097 6.55066 6.61244 7.18783 7.57467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.558 6.558 2 C -0.064 4.064 3 Si 0.788 3.212 4 C -0.218 4.218 5 C 0.082 3.918 6 N -0.571 5.571 7 C 0.112 3.888 8 C -0.124 4.124 9 C -0.065 4.065 10 C -0.179 4.179 11 C 0.558 3.442 12 O -0.593 6.593 13 N -0.698 5.698 14 C 0.111 3.889 15 H 0.085 0.915 16 C -0.107 4.107 17 C -0.114 4.114 18 H 0.085 0.915 19 C 0.119 3.881 20 N -0.286 5.286 21 C -0.034 4.034 22 C -0.075 4.075 23 N -0.326 5.326 24 N -0.122 5.122 25 C -0.142 4.142 26 C -0.025 4.025 27 C -0.128 4.128 28 H 0.384 0.616 29 H 0.097 0.903 30 H -0.257 1.257 31 H -0.311 1.311 32 H 0.209 0.791 33 H 0.439 0.561 34 H 0.164 0.836 35 H 0.165 0.835 36 H 0.418 0.582 37 H 0.092 0.908 38 H 0.127 0.873 39 H 0.152 0.848 40 H 0.117 0.883 41 H 0.237 0.763 42 H 0.209 0.791 43 H 0.100 0.900 44 H 0.042 0.958 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.268 -1.210 -15.342 15.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.366 6.366 2 C -0.172 4.172 3 Si 0.691 3.309 4 C -0.225 4.225 5 C -0.046 4.046 6 N -0.174 5.174 7 C 0.002 3.998 8 C -0.145 4.145 9 C -0.085 4.085 10 C -0.184 4.184 11 C 0.348 3.652 12 O -0.475 6.475 13 N -0.349 5.349 14 C 0.006 3.994 15 H 0.104 0.896 16 C -0.146 4.146 17 C -0.134 4.134 18 H 0.104 0.896 19 C 0.000 4.000 20 N -0.080 5.080 21 C -0.186 4.186 22 C -0.232 4.232 23 N -0.191 5.191 24 N -0.101 5.101 25 C -0.180 4.180 26 C -0.044 4.044 27 C -0.133 4.133 28 H 0.233 0.767 29 H 0.115 0.885 30 H -0.182 1.182 31 H -0.240 1.240 32 H 0.226 0.774 33 H 0.281 0.719 34 H 0.181 0.819 35 H 0.182 0.818 36 H 0.257 0.743 37 H 0.111 0.889 38 H 0.145 0.855 39 H 0.170 0.830 40 H 0.135 0.865 41 H 0.253 0.747 42 H 0.226 0.774 43 H 0.118 0.882 44 H 0.061 0.939 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 2.510 0.703 -13.517 13.766 hybrid contribution -1.498 -1.036 -0.595 1.916 sum 1.012 -0.333 -14.112 14.152 Atomic orbital electron populations 1.86601 1.19411 1.80637 1.49919 1.24780 0.82734 1.12537 0.97119 0.94079 0.89628 0.69939 0.77292 1.20760 1.11272 0.91547 0.98939 1.22166 0.98409 0.95736 0.88260 1.41758 1.53867 1.03125 1.18669 1.18652 0.99706 0.87944 0.93507 1.20089 1.04303 0.87912 1.02153 1.20898 0.95769 1.00384 0.91409 1.19593 1.09062 0.92077 0.97618 1.18593 0.77089 0.84388 0.85145 1.90771 1.47148 1.86910 1.22687 1.45675 1.63420 1.04360 1.21483 1.22507 0.97371 0.83922 0.95568 0.89642 1.23294 1.02697 0.90478 0.98111 1.22507 0.97879 0.93076 0.99898 0.89643 1.22600 0.99783 0.92563 0.85061 1.47885 1.33602 1.07968 1.18585 1.24438 1.06367 0.85408 1.02380 1.24234 1.02372 0.99976 0.96658 1.75101 1.21706 0.98568 1.23751 1.78283 1.12408 1.22594 0.96836 1.23525 0.98407 0.95056 1.01048 1.20599 0.94589 0.90964 0.98288 1.19179 1.05092 0.93457 0.95532 0.76689 0.88455 1.18210 1.23995 0.77405 0.71946 0.81853 0.81805 0.74272 0.88911 0.85450 0.83038 0.86544 0.74662 0.77440 0.88175 0.93904 0.87856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -4.19 12.88 -148.98 -1.92 -6.11 16 2 C -0.06 -0.21 3.06 71.23 0.22 0.01 16 3 Si 0.79 -1.99 30.82 68.60 2.11 0.12 16 4 C -0.22 -0.47 5.58 -18.61 -0.10 -0.57 16 5 C 0.08 -0.41 10.43 82.98 0.87 0.45 16 6 N -0.57 3.59 6.05 -187.48 -1.13 2.46 16 7 C 0.11 -0.03 7.27 39.19 0.28 0.26 16 8 C -0.12 0.51 10.00 22.09 0.22 0.73 16 9 C -0.06 0.17 9.46 22.30 0.21 0.38 16 10 C -0.18 -1.12 5.87 -20.09 -0.12 -1.24 16 11 C 0.56 5.21 7.76 86.73 0.67 5.88 16 12 O -0.59 -11.85 15.93 -3.97 -0.06 -11.91 16 13 N -0.70 0.23 5.30 -443.09 -2.35 -2.12 16 14 C 0.11 -0.01 4.24 45.52 0.19 0.18 16 15 H 0.09 0.59 7.46 -2.39 -0.02 0.57 16 16 C -0.11 1.04 7.39 31.12 0.23 1.27 16 17 C -0.11 0.64 3.77 -10.26 -0.04 0.60 16 18 H 0.09 -0.14 8.14 -2.39 -0.02 -0.16 16 19 C 0.12 -1.11 6.29 86.38 0.54 -0.56 16 20 N -0.29 0.00 3.44 -347.74 -1.20 -1.20 16 21 C -0.03 0.11 11.57 83.49 0.97 1.08 16 22 C -0.07 -0.24 12.05 83.73 1.01 0.77 16 23 N -0.33 -4.09 12.41 -58.25 -0.72 -4.82 16 24 N -0.12 -1.23 12.94 37.02 0.48 -0.75 16 25 C -0.14 -0.04 7.43 31.12 0.23 0.20 16 26 C -0.02 -0.26 9.64 22.73 0.22 -0.04 16 27 C -0.13 -0.79 6.34 -20.21 -0.13 -0.92 16 28 H 0.38 0.05 8.70 -74.06 -0.64 -0.59 16 29 H 0.10 0.55 7.96 -2.39 -0.02 0.53 16 30 H -0.26 0.75 7.00 99.48 0.70 1.44 16 31 H -0.31 -2.13 7.11 99.48 0.71 -1.42 16 32 H 0.21 -2.52 6.27 -2.91 -0.02 -2.54 16 33 H 0.44 -5.93 8.96 -92.71 -0.83 -6.76 16 34 H 0.16 -1.85 8.06 -2.91 -0.02 -1.88 16 35 H 0.16 -1.82 6.36 -2.91 -0.02 -1.84 16 36 H 0.42 -3.62 6.73 -92.71 -0.62 -4.24 16 37 H 0.09 -0.95 8.14 -2.39 -0.02 -0.96 16 38 H 0.13 -2.04 8.08 -2.39 -0.02 -2.06 16 39 H 0.15 -2.63 8.07 -2.39 -0.02 -2.65 16 40 H 0.12 -1.36 7.84 -2.39 -0.02 -1.38 16 41 H 0.24 -3.28 8.06 -2.91 -0.02 -3.30 16 42 H 0.21 -0.61 8.06 -2.91 -0.02 -0.63 16 43 H 0.10 -0.22 7.90 -2.39 -0.02 -0.24 16 44 H 0.04 0.35 8.14 -2.38 -0.02 0.33 16 45 H 0.10 1.67 7.64 -2.91 -0.02 1.64 16 Total: 0.00 -41.68 382.62 -0.31 -42.00 By element: Atomic # 1 Polarization: -25.14 SS G_CDS: -1.00 Total: -26.14 kcal Atomic # 6 Polarization: 2.99 SS G_CDS: 5.48 Total: 8.47 kcal Atomic # 7 Polarization: -1.51 SS G_CDS: -4.92 Total: -6.43 kcal Atomic # 8 Polarization: -16.04 SS G_CDS: -1.98 Total: -18.02 kcal Atomic # 14 Polarization: -1.99 SS G_CDS: 2.11 Total: 0.12 kcal Total: -41.68 -0.31 -42.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14928172_13287722.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.451 kcal (2) G-P(sol) polarization free energy of solvation -41.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.995 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds