Wall clock time and date at job start Sun Mar 7 2021 00:32:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42895 * 1 3 3 Si 1.86307 * 109.47258 * 2 1 4 4 C 1.50691 * 109.47153 * 240.00090 * 2 1 3 5 5 C 1.38588 * 120.32682 * 300.02327 * 4 2 1 6 6 C 1.38634 * 118.48822 * 179.72653 * 5 4 2 7 7 C 1.39261 * 119.06314 * 0.51310 * 6 5 4 8 8 C 1.48171 * 119.72397 * 179.74846 * 7 6 5 9 9 O 1.21513 * 119.99744 * 359.73133 * 8 7 6 10 10 N 1.34773 * 119.99665 * 179.72392 * 8 7 6 11 11 C 1.46508 * 119.99594 * 180.02562 * 10 8 7 12 12 H 1.09006 * 112.85122 * 336.19708 * 11 10 8 13 13 C 1.53779 * 113.69115 * 107.46541 * 11 10 8 14 14 C 1.53784 * 87.08045 * 139.99342 * 13 11 10 15 15 H 1.08994 * 113.61477 * 89.11454 * 14 13 11 16 16 C 1.52997 * 113.61270 * 220.02125 * 14 13 11 17 17 N 1.46498 * 109.47070 * 272.49429 * 16 14 13 18 18 C 1.35323 * 125.86761 * 124.99944 * 17 16 14 19 19 C 1.35350 * 106.17320 * 180.02562 * 18 17 16 20 20 N 1.33775 * 106.50089 * 359.97438 * 19 18 17 21 21 N 1.28644 * 108.88136 * 359.73575 * 20 19 18 22 22 C 1.53779 * 113.61245 * 205.00346 * 11 10 8 23 23 N 1.32748 * 120.55424 * 359.47467 * 7 6 5 24 24 C 1.31494 * 121.64083 * 0.25570 * 23 7 6 25 25 H 0.96697 * 114.00208 * 59.99726 * 1 2 3 26 26 H 1.09004 * 109.47070 * 119.99661 * 2 1 3 27 27 H 1.48499 * 109.99986 * 298.68203 * 3 2 1 28 28 H 1.48503 * 109.99870 * 60.00181 * 3 2 1 29 29 H 1.07999 * 120.75370 * 359.97150 * 5 4 2 30 30 H 1.07997 * 120.46534 * 180.26415 * 6 5 4 31 31 H 0.96996 * 120.00779 * 0.02562 * 10 8 7 32 32 H 1.09002 * 113.61557 * 25.44454 * 13 11 10 33 33 H 1.09004 * 113.61501 * 254.53874 * 13 11 10 34 34 H 1.08998 * 109.47573 * 32.49481 * 16 14 13 35 35 H 1.09003 * 109.47157 * 152.50001 * 16 14 13 36 36 H 1.07993 * 126.91161 * 359.97438 * 18 17 16 37 37 H 1.08004 * 126.74827 * 179.97438 * 19 18 17 38 38 H 1.08997 * 113.61646 * 105.38794 * 22 11 10 39 39 H 1.09000 * 113.61527 * 334.48065 * 22 11 10 40 40 H 1.08005 * 119.54694 * 180.02562 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7103 -1.2304 5 6 1.6002 -2.0369 -1.4567 6 6 2.0783 -2.6514 -2.6038 7 6 2.8792 -1.9215 -3.4786 8 6 3.4027 -2.5653 -4.7061 9 8 3.1368 -3.7270 -4.9435 10 7 4.1737 -1.8624 -5.5593 11 6 4.6908 -2.4989 -6.7733 12 1 4.7516 -3.5840 -6.6894 13 6 4.0051 -2.0183 -8.0631 14 6 5.3959 -2.0445 -8.7189 15 1 5.6493 -3.0053 -9.1668 16 6 5.6535 -0.8636 -9.6569 17 7 5.1694 -1.1922 -11.0000 18 6 4.2880 -0.4650 -11.7250 19 6 4.1240 -1.1275 -12.8938 20 7 4.9032 -2.2129 -12.8279 21 7 5.5138 -2.2189 -11.6956 22 6 5.9778 -1.8495 -7.3088 23 7 3.1730 -0.6520 -3.2246 24 6 2.7285 -0.0433 -2.1472 25 1 -0.3933 0.4417 -0.7650 26 1 1.7923 -0.5138 0.8900 27 1 1.5879 2.4586 -1.2242 28 1 1.5615 2.4679 1.2085 29 1 0.9806 -2.5785 -0.7574 30 1 1.8364 -3.6827 -2.8139 31 1 4.3861 -0.9352 -5.3697 32 1 3.5784 -1.0183 -7.9842 33 1 3.3099 -2.7443 -8.4846 34 1 5.1277 0.0163 -9.2863 35 1 6.7232 -0.6578 -9.6966 36 1 3.8107 0.4577 -11.4299 37 1 3.4890 -0.8370 -13.7177 38 1 6.8751 -2.4393 -7.1215 39 1 6.0904 -0.8035 -7.0237 40 1 2.9881 0.9907 -1.9743 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14928172_13287726.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:32:38 Heat of formation + Delta-G solvation = 101.943983 kcal Electronic energy + Delta-G solvation = -24881.539257 eV Core-core repulsion = 21087.385383 eV Total energy + Delta-G solvation = -3794.153873 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 316.132 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -44.15591 -41.95648 -40.90155 -39.51769 -38.01035 -35.84436 -34.56534 -33.55711 -32.97108 -31.94032 -29.63328 -27.85459 -26.79311 -25.17302 -24.90184 -23.74550 -23.44582 -22.37064 -21.75222 -20.77413 -19.18080 -18.74040 -18.59950 -17.87696 -17.43358 -16.87571 -16.62879 -16.48389 -16.37767 -16.15370 -16.05360 -15.78814 -15.24689 -15.01009 -14.79851 -14.39483 -14.36257 -14.30418 -13.66084 -13.50930 -13.47950 -13.07032 -12.70283 -12.64144 -12.41116 -12.13918 -12.01434 -11.83269 -11.59881 -11.43906 -11.10576 -10.93171 -10.70330 -10.67075 -10.38992 -10.31477 -10.07844 -4.91634 -0.61800 0.06639 0.70158 1.24742 1.49655 1.53382 1.60853 1.63821 1.94207 1.98904 2.63911 2.92670 3.31261 3.32814 3.37869 3.49139 3.51632 3.65072 3.70542 3.73234 3.78361 3.92042 3.99913 4.06838 4.12572 4.31114 4.35660 4.40711 4.47680 4.58201 4.60059 4.66516 4.72941 4.80924 4.88536 4.93710 4.98014 5.01195 5.14707 5.28541 5.36729 5.48168 5.72968 6.25889 6.42390 6.60489 7.03271 7.55145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.545 6.545 2 C -0.081 4.081 3 Si 0.770 3.230 4 C -0.140 4.140 5 C -0.054 4.054 6 C -0.119 4.119 7 C 0.064 3.936 8 C 0.568 3.432 9 O -0.571 6.571 10 N -0.684 5.684 11 C 0.112 3.888 12 H 0.093 0.907 13 C -0.143 4.143 14 C -0.118 4.118 15 H 0.087 0.913 16 C 0.120 3.880 17 N -0.284 5.284 18 C -0.034 4.034 19 C -0.074 4.074 20 N -0.323 5.323 21 N -0.127 5.127 22 C -0.112 4.112 23 N -0.455 5.455 24 C 0.103 3.897 25 H 0.388 0.612 26 H 0.136 0.864 27 H -0.272 1.272 28 H -0.302 1.302 29 H 0.158 0.842 30 H 0.145 0.855 31 H 0.423 0.577 32 H 0.110 0.890 33 H 0.048 0.952 34 H 0.147 0.853 35 H 0.118 0.882 36 H 0.235 0.765 37 H 0.209 0.791 38 H 0.088 0.912 39 H 0.125 0.875 40 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.653 9.718 5.129 11.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.353 6.353 2 C -0.190 4.190 3 Si 0.674 3.326 4 C -0.142 4.142 5 C -0.080 4.080 6 C -0.140 4.140 7 C -0.073 4.073 8 C 0.353 3.647 9 O -0.450 6.450 10 N -0.335 5.335 11 C 0.007 3.993 12 H 0.111 0.889 13 C -0.182 4.182 14 C -0.138 4.138 15 H 0.105 0.895 16 C 0.000 4.000 17 N -0.078 5.078 18 C -0.186 4.186 19 C -0.232 4.232 20 N -0.188 5.188 21 N -0.106 5.106 22 C -0.151 4.151 23 N -0.166 5.166 24 C -0.057 4.057 25 H 0.238 0.762 26 H 0.153 0.847 27 H -0.199 1.199 28 H -0.230 1.230 29 H 0.176 0.824 30 H 0.163 0.837 31 H 0.262 0.738 32 H 0.128 0.872 33 H 0.067 0.933 34 H 0.165 0.835 35 H 0.136 0.864 36 H 0.251 0.749 37 H 0.226 0.774 38 H 0.107 0.893 39 H 0.144 0.856 40 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 2.788 8.541 4.836 10.203 hybrid contribution -2.422 0.157 0.103 2.430 sum 0.366 8.698 4.940 10.009 Atomic orbital electron populations 1.86615 1.18038 1.80375 1.50276 1.25261 0.83707 1.12239 0.97793 0.94109 0.89943 0.71322 0.77190 1.21699 0.98555 0.95525 0.98419 1.21718 0.96272 0.94124 0.95848 1.22273 0.95706 1.02059 0.93932 1.21050 0.98863 0.91439 0.95955 1.18177 0.78491 0.85258 0.82737 1.90801 1.60046 1.18024 1.76143 1.45717 1.49614 1.16360 1.21797 1.22546 0.95857 0.98468 0.82400 0.88909 1.23601 0.96364 1.03008 0.95219 1.22561 0.97444 0.98907 0.94885 0.89501 1.22586 1.03567 0.99527 0.74284 1.47838 1.28593 1.15680 1.15667 1.24401 0.98251 1.02721 0.93179 1.24227 1.03944 0.93733 1.01282 1.75088 1.10085 1.21644 1.11957 1.78221 1.22182 1.09574 1.00631 1.23310 0.96359 1.03882 0.91533 1.67511 1.20670 1.08356 1.20065 1.23051 0.93417 1.00700 0.88493 0.76223 0.84651 1.19855 1.22999 0.82398 0.83736 0.73760 0.87152 0.93304 0.83492 0.86439 0.74853 0.77429 0.89347 0.85643 0.79370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 1.50 12.78 -148.98 -1.90 -0.40 16 2 C -0.08 0.52 2.83 71.23 0.20 0.73 16 3 Si 0.77 -6.06 29.82 68.60 2.05 -4.02 16 4 C -0.14 0.68 5.40 -19.70 -0.11 0.57 16 5 C -0.05 0.14 9.76 22.45 0.22 0.35 16 6 C -0.12 -0.17 9.63 22.61 0.22 0.05 16 7 C 0.06 0.15 6.75 41.89 0.28 0.43 16 8 C 0.57 2.95 7.81 86.88 0.68 3.63 16 9 O -0.57 -7.45 15.92 -3.76 -0.06 -7.51 16 10 N -0.68 1.20 5.35 -442.59 -2.37 -1.16 16 11 C 0.11 -0.27 4.24 45.51 0.19 -0.08 16 12 H 0.09 0.33 7.46 -2.38 -0.02 0.31 16 13 C -0.14 0.57 7.43 31.12 0.23 0.80 16 14 C -0.12 0.70 3.84 -10.27 -0.04 0.66 16 15 H 0.09 0.02 7.92 -2.39 -0.02 0.00 16 16 C 0.12 -1.08 6.29 86.38 0.54 -0.54 16 17 N -0.28 0.02 3.44 -347.74 -1.20 -1.18 16 18 C -0.03 0.11 11.57 83.49 0.97 1.07 16 19 C -0.07 -0.23 12.05 83.73 1.01 0.78 16 20 N -0.32 -3.90 12.41 -58.25 -0.72 -4.62 16 21 N -0.13 -1.23 12.77 37.02 0.47 -0.76 16 22 C -0.11 1.04 7.39 31.12 0.23 1.27 16 23 N -0.45 0.61 9.54 -184.91 -1.76 -1.16 16 24 C 0.10 -0.52 9.84 84.83 0.83 0.31 16 25 H 0.39 -3.19 8.70 -74.06 -0.64 -3.83 16 26 H 0.14 -1.13 7.96 -2.39 -0.02 -1.15 16 27 H -0.27 1.32 7.11 99.48 0.71 2.02 16 28 H -0.30 -0.27 7.11 99.48 0.71 0.44 16 29 H 0.16 -0.79 8.06 -2.91 -0.02 -0.81 16 30 H 0.14 0.34 7.64 -2.91 -0.02 0.32 16 31 H 0.42 -2.80 8.06 -92.71 -0.75 -3.55 16 32 H 0.11 -0.91 7.90 -2.39 -0.02 -0.92 16 33 H 0.05 0.10 8.14 -2.39 -0.02 0.08 16 34 H 0.15 -2.46 7.77 -2.39 -0.02 -2.47 16 35 H 0.12 -1.31 8.14 -2.39 -0.02 -1.32 16 36 H 0.24 -3.17 8.06 -2.91 -0.02 -3.19 16 37 H 0.21 -0.64 8.06 -2.91 -0.02 -0.66 16 38 H 0.09 -0.76 8.14 -2.39 -0.02 -0.78 16 39 H 0.13 -1.89 8.08 -2.39 -0.02 -1.91 16 40 H 0.19 -2.04 4.89 -2.91 -0.01 -2.05 16 Total: 0.00 -29.95 346.06 -0.29 -30.24 By element: Atomic # 1 Polarization: -19.24 SS G_CDS: -0.25 Total: -19.49 kcal Atomic # 6 Polarization: 4.59 SS G_CDS: 5.46 Total: 10.05 kcal Atomic # 7 Polarization: -3.30 SS G_CDS: -5.58 Total: -8.88 kcal Atomic # 8 Polarization: -5.94 SS G_CDS: -1.96 Total: -7.91 kcal Atomic # 14 Polarization: -6.06 SS G_CDS: 2.05 Total: -4.02 kcal Total: -29.95 -0.29 -30.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14928172_13287726.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.180 kcal (2) G-P(sol) polarization free energy of solvation -29.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds