Wall clock time and date at job start Sun Mar 7 2021 00:33:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36414 * 125.80285 * 2 1 4 4 C 1.47379 * 127.19505 * 0.02562 * 3 2 1 5 5 O 1.21615 * 119.99344 * 359.71541 * 4 3 2 6 6 N 1.34771 * 120.00359 * 179.71490 * 4 3 2 7 7 C 1.46494 * 120.00105 * 180.02562 * 6 4 3 8 8 H 1.09002 * 112.85104 * 23.79460 * 7 6 4 9 9 C 1.53784 * 113.61723 * 154.99906 * 7 6 4 10 10 C 1.53780 * 87.08191 * 139.97783 * 9 7 6 11 11 H 1.08993 * 113.61660 * 89.19874 * 10 9 7 12 12 C 1.53000 * 113.61256 * 220.01837 * 10 9 7 13 13 N 1.46496 * 109.47114 * 183.46912 * 12 10 9 14 14 C 1.35314 * 125.86616 * 124.99942 * 13 12 10 15 15 C 1.35358 * 106.17498 * 180.02562 * 14 13 12 16 16 N 1.33767 * 106.49287 * 0.26477 * 15 14 13 17 17 N 1.28632 * 108.88855 * 359.56308 * 16 15 14 18 18 C 1.53782 * 87.17517 * 334.60692 * 10 9 7 19 19 C 1.47025 * 105.61218 * 179.75349 * 3 2 1 20 20 C 1.34177 * 105.95538 * 0.21944 * 19 3 2 21 21 C 1.50700 * 125.43289 * 180.02562 * 20 19 3 22 22 O 1.42893 * 109.47260 * 299.99917 * 21 20 19 23 23 Si 1.86309 * 109.46644 * 180.02562 * 21 20 19 24 24 O 1.33651 * 125.79846 * 180.13471 * 2 1 3 25 25 H 1.08999 * 109.47388 * 90.00097 * 1 2 3 26 26 H 1.09001 * 109.47331 * 210.00850 * 1 2 3 27 27 H 1.09005 * 109.46892 * 329.99975 * 1 2 3 28 28 H 0.96998 * 119.99917 * 359.97438 * 6 4 3 29 29 H 1.09001 * 113.61250 * 25.42383 * 9 7 6 30 30 H 1.08998 * 113.61373 * 254.52480 * 9 7 6 31 31 H 1.09006 * 109.47400 * 63.46960 * 12 10 9 32 32 H 1.08998 * 109.47134 * 303.47317 * 12 10 9 33 33 H 1.08004 * 126.91628 * 0.06220 * 14 13 12 34 34 H 1.08002 * 126.74926 * 179.97438 * 15 14 13 35 35 H 1.09001 * 113.61706 * 139.93680 * 18 10 9 36 36 H 1.09002 * 113.61588 * 270.84691 * 18 10 9 37 37 H 1.08004 * 127.01965 * 180.20505 * 19 3 2 38 38 H 1.09001 * 109.47185 * 60.00165 * 21 20 19 39 39 H 0.96701 * 114.00031 * 300.00183 * 22 21 20 40 40 H 1.48504 * 109.99832 * 179.97438 * 23 21 20 41 41 H 1.48498 * 109.99900 * 301.31644 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.1064 0.0000 4 6 1.8741 2.5157 0.0005 5 8 0.6891 2.7891 -0.0042 6 7 2.7931 3.5015 0.0063 7 6 2.3647 4.9024 0.0073 8 1 1.3603 5.0376 0.4088 9 6 3.4032 5.8638 0.6090 10 6 3.0305 6.8447 -0.5151 11 1 2.2089 7.5128 -0.2570 12 6 4.2325 7.5827 -1.1081 13 7 3.7683 8.5482 -2.1073 14 6 4.0416 9.8734 -2.1159 15 6 3.4192 10.3797 -3.2061 16 7 2.7989 9.3540 -3.7998 17 7 3.0299 8.2820 -3.1273 18 6 2.5937 5.6197 -1.3356 19 6 3.6849 0.5989 0.0061 20 6 3.5858 -0.7392 0.0042 21 6 4.7459 -1.7012 0.0093 22 8 5.5486 -1.4855 -1.1530 23 14 4.1025 -3.4496 0.0033 24 8 2.2888 -1.0840 -0.0025 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3634 -0.8899 0.5140 27 1 -0.3633 0.8900 0.5139 28 1 3.7382 3.2834 0.0104 29 1 4.4273 5.4956 0.5456 30 1 3.1418 6.2213 1.6050 31 1 4.9027 6.8646 -1.5807 32 1 4.7640 8.1079 -0.3146 33 1 4.6372 10.4177 -1.3979 34 1 3.4192 11.4100 -3.5300 35 1 1.6796 5.7803 -1.9073 36 1 3.3960 5.1847 -1.9316 37 1 4.5929 1.1838 0.0109 38 1 5.3488 -1.5385 0.9026 39 1 5.0758 -1.6131 -1.9868 40 1 5.2368 -4.4082 0.0076 41 1 3.2399 -3.6775 1.1903 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14928172_13308374.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:33:00 Heat of formation + Delta-G solvation = 79.594502 kcal Electronic energy + Delta-G solvation = -25904.676170 eV Core-core repulsion = 21984.523010 eV Total energy + Delta-G solvation = -3920.153160 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 319.136 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -44.13488 -43.75964 -41.15289 -39.46074 -38.12899 -35.81743 -34.51603 -33.83726 -33.06507 -31.91658 -29.86147 -29.26049 -26.92810 -26.20839 -25.01512 -23.82347 -23.49077 -22.53681 -21.72752 -21.38854 -20.36443 -18.96539 -18.70530 -17.97969 -17.68746 -17.50989 -16.95177 -16.74740 -16.27777 -16.08385 -15.88662 -15.82924 -15.64846 -15.29814 -14.79247 -14.41519 -14.27373 -14.24338 -14.05808 -13.89456 -13.77577 -13.65386 -13.26418 -12.94026 -12.85003 -12.59409 -12.40793 -12.17587 -12.11453 -11.87613 -11.54051 -11.05122 -10.96719 -10.89356 -10.67842 -10.29247 -10.08758 -9.57179 -5.10261 0.28763 0.67871 0.81219 1.08091 1.34181 1.38262 1.71719 1.72000 1.86596 2.14911 2.32507 3.06973 3.11220 3.21880 3.33639 3.39580 3.48054 3.62302 3.73400 3.74928 3.83040 3.89173 4.01345 4.10415 4.14824 4.19344 4.32672 4.38109 4.45946 4.51597 4.53446 4.54517 4.64118 4.72272 4.77807 4.80724 5.00209 5.05450 5.12012 5.20095 5.25795 5.46992 5.62205 5.89449 6.29983 6.46627 7.21646 7.62870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.096 3.904 3 C -0.255 4.255 4 C 0.594 3.406 5 O -0.538 6.538 6 N -0.714 5.714 7 C 0.125 3.875 8 H 0.119 0.881 9 C -0.135 4.135 10 C -0.122 4.122 11 H 0.103 0.897 12 C 0.126 3.874 13 N -0.291 5.291 14 C -0.054 4.054 15 C -0.051 4.051 16 N -0.273 5.273 17 N -0.078 5.078 18 C -0.138 4.138 19 C -0.149 4.149 20 C -0.056 4.056 21 C -0.027 4.027 22 O -0.530 6.530 23 Si 0.703 3.297 24 O -0.168 6.168 25 H 0.094 0.906 26 H 0.081 0.919 27 H 0.110 0.890 28 H 0.401 0.599 29 H 0.092 0.908 30 H 0.084 0.916 31 H 0.101 0.899 32 H 0.109 0.891 33 H 0.190 0.810 34 H 0.190 0.810 35 H 0.081 0.919 36 H 0.089 0.911 37 H 0.157 0.843 38 H 0.133 0.867 39 H 0.384 0.616 40 H -0.246 1.246 41 H -0.253 1.253 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.114 -0.193 2.980 5.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.043 3.957 3 C -0.259 4.259 4 C 0.383 3.617 5 O -0.416 6.416 6 N -0.364 5.364 7 C 0.020 3.980 8 H 0.137 0.863 9 C -0.174 4.174 10 C -0.142 4.142 11 H 0.122 0.878 12 C 0.005 3.995 13 N -0.085 5.085 14 C -0.204 4.204 15 C -0.209 4.209 16 N -0.139 5.139 17 N -0.058 5.058 18 C -0.177 4.177 19 C -0.168 4.168 20 C -0.104 4.104 21 C -0.138 4.138 22 O -0.336 6.336 23 Si 0.603 3.397 24 O -0.065 6.065 25 H 0.112 0.888 26 H 0.100 0.900 27 H 0.129 0.871 28 H 0.236 0.764 29 H 0.111 0.889 30 H 0.102 0.898 31 H 0.120 0.880 32 H 0.127 0.873 33 H 0.207 0.793 34 H 0.207 0.793 35 H 0.100 0.900 36 H 0.107 0.893 37 H 0.175 0.825 38 H 0.150 0.850 39 H 0.233 0.767 40 H -0.171 1.171 41 H -0.177 1.177 Dipole moment (debyes) X Y Z Total from point charges 2.862 -2.067 3.093 4.694 hybrid contribution 1.564 1.641 1.026 2.489 sum 4.427 -0.426 4.119 6.061 Atomic orbital electron populations 1.20709 0.83297 1.05415 1.04883 1.22933 0.94094 0.82844 0.95820 1.21120 0.93231 0.93804 1.17737 1.17198 0.85458 0.83748 0.75278 1.90784 1.16538 1.83991 1.50294 1.45710 1.09607 1.05520 1.75609 1.22517 0.99766 0.78754 0.96965 0.86296 1.23369 1.00041 0.95411 0.98580 1.22651 0.97614 0.96229 0.97692 0.87836 1.22183 0.97227 0.91079 0.89027 1.47531 1.33707 1.07808 1.19444 1.23746 1.07758 0.84861 1.04062 1.23689 1.00810 1.00974 0.95383 1.75173 1.19653 0.95893 1.23184 1.78353 1.10156 1.21128 0.96169 1.23546 1.03222 0.94089 0.96797 1.22557 0.96403 0.93507 1.04349 1.22617 0.82953 0.95640 1.09229 1.24400 0.89652 1.07532 0.92211 1.86555 1.38205 1.93400 1.15454 0.94157 0.82083 0.74080 0.89417 1.83677 1.16349 1.35052 1.71418 0.88781 0.89995 0.87134 0.76397 0.88917 0.89758 0.88040 0.87255 0.79281 0.79322 0.89978 0.89252 0.82494 0.85009 0.76738 1.17064 1.17695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 0.02 9.89 36.01 0.36 0.37 16 2 C 0.10 0.14 7.37 -34.97 -0.26 -0.12 16 3 C -0.25 -0.40 6.31 -103.27 -0.65 -1.05 16 4 C 0.59 1.40 7.81 -12.54 -0.10 1.30 16 5 O -0.54 -2.85 14.45 5.26 0.08 -2.77 16 6 N -0.71 0.52 5.35 -54.01 -0.29 0.23 16 7 C 0.12 -0.15 4.24 -67.02 -0.28 -0.44 16 8 H 0.12 0.08 7.46 -51.93 -0.39 -0.31 16 9 C -0.14 0.56 7.40 -25.92 -0.19 0.36 16 10 C -0.12 0.36 3.75 -89.81 -0.34 0.02 16 11 H 0.10 -0.19 8.14 -51.93 -0.42 -0.61 16 12 C 0.13 -0.45 6.28 -4.04 -0.03 -0.47 16 13 N -0.29 -0.07 3.44 -61.26 -0.21 -0.28 16 14 C -0.05 0.05 11.57 -17.04 -0.20 -0.15 16 15 C -0.05 -0.07 12.05 -17.74 -0.21 -0.28 16 16 N -0.27 -1.40 12.41 30.24 0.38 -1.02 16 17 N -0.08 -0.32 12.88 60.35 0.78 0.46 16 18 C -0.14 0.14 7.39 -25.82 -0.19 -0.05 16 19 C -0.15 0.01 10.46 -37.45 -0.39 -0.38 16 20 C -0.06 0.00 6.20 -35.74 -0.22 -0.22 16 21 C -0.03 0.04 2.98 36.01 0.11 0.15 16 22 O -0.53 0.74 12.86 -35.23 -0.45 0.29 16 23 Si 0.70 -1.05 32.08 -169.99 -5.45 -6.51 16 24 O -0.17 -0.16 8.89 7.66 0.07 -0.09 16 25 H 0.09 -0.10 8.14 -51.93 -0.42 -0.52 16 26 H 0.08 -0.15 8.14 -51.93 -0.42 -0.57 16 27 H 0.11 0.12 6.49 -51.93 -0.34 -0.22 16 28 H 0.40 -1.22 7.90 -40.82 -0.32 -1.55 16 29 H 0.09 -0.52 8.08 -51.93 -0.42 -0.94 16 30 H 0.08 -0.36 8.14 -51.93 -0.42 -0.78 16 31 H 0.10 -0.44 7.88 -51.93 -0.41 -0.84 16 32 H 0.11 -0.69 8.07 -51.93 -0.42 -1.11 16 33 H 0.19 -0.93 8.06 -52.48 -0.42 -1.36 16 34 H 0.19 -0.31 8.06 -52.49 -0.42 -0.73 16 35 H 0.08 0.11 8.14 -51.93 -0.42 -0.31 16 36 H 0.09 -0.11 7.92 -51.93 -0.41 -0.53 16 37 H 0.16 -0.34 7.74 -52.48 -0.41 -0.75 16 38 H 0.13 -0.25 7.96 -51.93 -0.41 -0.66 16 39 H 0.38 -1.89 8.70 45.56 0.40 -1.50 16 40 H -0.25 -0.24 7.11 56.52 0.40 0.16 16 41 H -0.25 -0.39 7.11 56.52 0.40 0.01 16 LS Contribution 355.30 15.07 5.35 5.35 Total: 0.00 -10.78 355.30 -7.64 -18.42 By element: Atomic # 1 Polarization: -7.82 SS G_CDS: -5.29 Total: -13.11 kcal Atomic # 6 Polarization: 1.63 SS G_CDS: -2.60 Total: -0.97 kcal Atomic # 7 Polarization: -1.27 SS G_CDS: 0.65 Total: -0.61 kcal Atomic # 8 Polarization: -2.27 SS G_CDS: -0.31 Total: -2.58 kcal Atomic # 14 Polarization: -1.05 SS G_CDS: -5.45 Total: -6.51 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -10.78 -7.64 -18.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14928172_13308374.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.019 kcal (2) G-P(sol) polarization free energy of solvation -10.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.424 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds