Wall clock time and date at job start Sun Mar 7 2021 00:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86303 * 109.46859 * 2 1 4 4 C 1.50700 * 109.46728 * 240.00744 * 2 1 3 5 5 C 1.38251 * 119.94410 * 120.01961 * 4 2 1 6 6 C 1.38167 * 120.05602 * 179.72051 * 5 4 2 7 7 C 1.38719 * 119.94199 * 0.52959 * 6 5 4 8 8 O 1.35900 * 120.05451 * 179.74511 * 7 6 5 9 9 C 1.42894 * 116.99998 * 359.72235 * 8 7 6 10 10 C 1.50704 * 109.47027 * 179.97438 * 9 8 7 11 11 O 1.21280 * 119.99686 * 0.02562 * 10 9 8 12 12 N 1.34776 * 119.99824 * 180.02562 * 10 9 8 13 13 C 1.46499 * 119.99725 * 180.02562 * 12 10 9 14 14 H 1.08997 * 112.85535 * 336.19829 * 13 12 10 15 15 C 1.53958 * 113.66742 * 107.44286 * 13 12 10 16 16 C 1.53781 * 87.02081 * 139.93141 * 15 13 12 17 17 H 1.08997 * 113.61020 * 89.23023 * 16 15 13 18 18 C 1.52995 * 113.61367 * 220.04892 * 16 15 13 19 19 N 1.46506 * 109.47276 * 274.13740 * 18 16 15 20 20 C 1.35312 * 125.86709 * 124.71314 * 19 18 16 21 21 C 1.35352 * 106.17240 * 179.90780 * 20 19 18 22 22 N 1.33775 * 106.49643 * 0.35153 * 21 20 19 23 23 N 1.28629 * 108.88590 * 359.77853 * 22 21 20 24 24 C 1.53777 * 87.17042 * 334.63924 * 16 15 13 25 25 C 1.38752 * 119.88680 * 359.47057 * 7 6 5 26 26 N 1.48002 * 120.02601 * 180.23436 * 25 7 6 27 27 O 1.21801 * 119.99865 * 179.97438 * 26 25 7 28 28 O 1.21800 * 120.00218 * 359.97438 * 26 25 7 29 29 C 1.38129 * 119.94631 * 0.25446 * 25 7 6 30 30 H 0.96694 * 114.00383 * 59.99744 * 1 2 3 31 31 H 1.08996 * 109.47553 * 120.00243 * 2 1 3 32 32 H 1.48507 * 109.99680 * 60.00399 * 3 2 1 33 33 H 1.48498 * 110.00050 * 181.32188 * 3 2 1 34 34 H 1.07999 * 119.97073 * 359.97438 * 5 4 2 35 35 H 1.07995 * 120.02883 * 180.25280 * 6 5 4 36 36 H 1.09010 * 109.46917 * 60.00269 * 9 8 7 37 37 H 1.08996 * 109.47367 * 299.99810 * 9 8 7 38 38 H 0.97000 * 120.00434 * 0.02562 * 12 10 9 39 39 H 1.09005 * 113.60943 * 25.41083 * 15 13 12 40 40 H 1.09000 * 113.66441 * 254.46530 * 15 13 12 41 41 H 1.08997 * 109.47344 * 154.13512 * 18 16 15 42 42 H 1.08998 * 109.47310 * 34.13538 * 18 16 15 43 43 H 1.07995 * 126.91362 * 0.02562 * 20 19 18 44 44 H 1.08000 * 126.75115 * 180.12638 * 21 20 19 45 45 H 1.09010 * 113.60995 * 139.94280 * 24 16 15 46 46 H 1.09002 * 113.61357 * 270.75438 * 24 16 15 47 47 H 1.07995 * 119.97350 * 180.02562 * 29 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7103 -1.2306 5 6 2.7263 -0.0373 -2.1396 6 6 3.1928 -0.6879 -3.2657 7 6 2.8537 -2.0143 -3.4894 8 8 3.3071 -2.6549 -4.5988 9 6 4.1237 -1.8997 -5.4958 10 6 4.5295 -2.7688 -6.6583 11 8 4.1557 -3.9212 -6.7133 12 7 5.3078 -2.2653 -7.6366 13 6 5.7018 -3.1099 -8.7669 14 1 5.6763 -4.1735 -8.5297 15 6 4.9864 -2.7544 -10.0830 16 6 6.3322 -2.9965 -10.7865 17 1 6.4797 -4.0290 -11.1033 18 6 6.6351 -1.9860 -11.8945 19 7 6.0195 -2.4343 -13.1461 20 6 5.1589 -1.7192 -13.9069 21 6 4.8444 -2.5067 -14.9619 22 7 5.5130 -3.6530 -14.7928 23 7 6.1998 -3.5783 -13.7078 24 6 7.0066 -2.6613 -9.4458 25 6 2.0557 -2.6875 -2.5755 26 7 1.6963 -4.1042 -2.8084 27 8 0.9961 -4.6947 -2.0056 28 8 2.1007 -4.6795 -3.8029 29 6 1.5965 -2.0342 -1.4484 30 1 -0.3933 0.4417 -0.7650 31 1 1.7924 -0.5138 0.8899 32 1 1.5614 2.4679 1.2086 33 1 3.5345 1.7704 -0.0322 34 1 2.9863 0.9967 -1.9673 35 1 3.8172 -0.1630 -3.9734 36 1 5.0153 -1.5544 -4.9722 37 1 3.5621 -1.0406 -5.8627 38 1 5.6071 -1.3437 -7.5924 39 1 4.6489 -1.7190 -10.1305 40 1 4.2113 -3.4667 -10.3659 41 1 7.7139 -1.9061 -12.0285 42 1 6.2302 -1.0123 -11.6189 43 1 4.7973 -0.7202 -13.7127 44 1 4.1809 -2.2598 -15.7775 45 1 7.8604 -3.2986 -9.2151 46 1 7.2238 -1.6006 -9.3195 47 1 0.9757 -2.5578 -0.7366 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14928172_4549638.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:34:35 Heat of formation + Delta-G solvation = 69.449085 kcal Electronic energy + Delta-G solvation = -34857.542061 eV Core-core repulsion = 29822.168767 eV Total energy + Delta-G solvation = -5035.373293 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 390.146 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -44.17893 -43.06094 -41.87375 -41.28813 -40.12435 -39.22675 -37.57700 -37.15813 -35.91498 -34.49911 -33.54582 -32.43528 -31.96871 -30.58523 -29.27953 -27.63713 -27.10678 -26.78866 -25.06079 -24.01990 -23.60718 -22.87719 -22.46397 -21.88252 -20.90378 -20.51755 -19.48436 -19.30148 -18.84004 -18.47772 -18.38488 -18.28243 -17.78353 -17.73545 -17.28140 -16.90581 -16.63730 -16.54418 -16.31641 -15.92704 -15.83950 -15.76698 -15.32554 -15.14121 -14.97505 -14.84558 -14.20714 -14.11760 -13.98001 -13.94593 -13.82485 -13.36092 -13.29045 -12.76607 -12.64525 -12.50392 -12.45224 -12.23227 -12.22647 -12.16097 -11.88723 -11.85594 -11.82027 -11.76676 -11.10176 -10.98333 -10.96449 -10.80781 -10.35181 -10.31970 -9.95727 -5.34776 -1.17679 -0.43214 0.33963 0.49240 0.63501 0.95825 1.01121 1.27587 1.31647 1.31981 1.68297 1.71668 1.88658 2.09941 2.93628 2.94486 3.00975 3.07204 3.14926 3.18935 3.22599 3.30873 3.40598 3.46692 3.50274 3.51896 3.56888 3.66034 3.66995 3.78627 4.00214 4.09166 4.10374 4.11156 4.25126 4.26041 4.29003 4.37683 4.41061 4.45415 4.59036 4.62749 4.72344 4.75207 4.87636 4.91622 5.20133 5.23274 5.38871 5.57098 5.65925 6.12341 6.29064 6.90052 6.91736 7.58335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.535 6.535 2 C -0.066 4.066 3 Si 0.693 3.307 4 C -0.157 4.157 5 C -0.025 4.025 6 C -0.209 4.209 7 C 0.199 3.801 8 O -0.254 6.254 9 C 0.031 3.969 10 C 0.514 3.486 11 O -0.492 6.492 12 N -0.718 5.718 13 C 0.129 3.871 14 H 0.123 0.877 15 C -0.149 4.149 16 C -0.125 4.125 17 H 0.115 0.885 18 C 0.127 3.873 19 N -0.290 5.290 20 C -0.052 4.052 21 C -0.051 4.051 22 N -0.271 5.271 23 N -0.083 5.083 24 C -0.134 4.134 25 C -0.075 4.075 26 N 0.028 4.972 27 O -0.176 6.176 28 O -0.118 6.118 29 C 0.009 3.991 30 H 0.381 0.619 31 H 0.121 0.879 32 H -0.248 1.248 33 H -0.254 1.254 34 H 0.149 0.851 35 H 0.156 0.844 36 H 0.102 0.898 37 H 0.102 0.898 38 H 0.402 0.598 39 H 0.088 0.912 40 H 0.078 0.922 41 H 0.104 0.896 42 H 0.107 0.893 43 H 0.190 0.810 44 H 0.190 0.810 45 H 0.087 0.913 46 H 0.093 0.907 47 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.641 15.354 -0.218 15.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.341 6.341 2 C -0.177 4.177 3 Si 0.594 3.406 4 C -0.159 4.159 5 C -0.043 4.043 6 C -0.229 4.229 7 C 0.150 3.850 8 O -0.163 6.163 9 C -0.048 4.048 10 C 0.297 3.703 11 O -0.364 6.364 12 N -0.372 5.372 13 C 0.024 3.976 14 H 0.140 0.860 15 C -0.188 4.188 16 C -0.144 4.144 17 H 0.133 0.867 18 C 0.006 3.994 19 N -0.083 5.083 20 C -0.203 4.203 21 C -0.208 4.208 22 N -0.136 5.136 23 N -0.063 5.063 24 C -0.173 4.173 25 C -0.159 4.159 26 N 0.548 4.452 27 O -0.385 6.385 28 O -0.342 6.342 29 C -0.009 4.009 30 H 0.229 0.771 31 H 0.139 0.861 32 H -0.173 1.173 33 H -0.179 1.179 34 H 0.166 0.834 35 H 0.174 0.826 36 H 0.120 0.880 37 H 0.120 0.880 38 H 0.237 0.763 39 H 0.107 0.893 40 H 0.097 0.903 41 H 0.122 0.878 42 H 0.125 0.875 43 H 0.207 0.793 44 H 0.207 0.793 45 H 0.106 0.894 46 H 0.111 0.889 47 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 4.764 13.875 0.939 14.701 hybrid contribution -0.302 0.964 0.062 1.012 sum 4.462 14.840 1.001 15.528 Atomic orbital electron populations 1.86564 1.16566 1.81605 1.49335 1.25105 0.85708 1.10270 0.96567 0.94921 0.80653 0.76966 0.88110 1.20324 1.02212 0.93981 0.99356 1.21269 0.91884 0.99814 0.91328 1.21261 1.07040 0.92707 1.01842 1.18691 0.89955 0.90806 0.85593 1.86507 1.62819 1.37493 1.29465 1.22736 0.96365 0.94918 0.90779 1.19879 0.79283 0.88179 0.82910 1.90881 1.51888 1.17123 1.76510 1.45749 1.52772 1.15733 1.22954 1.22518 0.94448 0.97159 0.83446 0.85959 1.23641 0.96976 1.02830 0.95320 1.22741 0.97821 1.01049 0.92807 0.86672 1.22159 0.99823 0.98421 0.78988 1.47493 1.30500 1.11436 1.18914 1.23705 0.99523 1.01784 0.95288 1.23693 1.04484 0.91493 1.01110 1.75173 1.07849 1.21483 1.09132 1.78312 1.20305 1.02875 1.04822 1.23363 0.97599 1.02798 0.93496 1.20595 1.10523 0.84071 1.00747 1.43343 0.99208 1.02279 1.00361 1.94561 1.35211 1.66652 1.42057 1.94699 1.54723 1.67581 1.17173 1.20846 0.93467 0.93557 0.93073 0.77129 0.86142 1.17253 1.17929 0.83392 0.82622 0.88036 0.87978 0.76330 0.89320 0.90331 0.87816 0.87494 0.79342 0.79303 0.89428 0.88863 0.81781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 1.07 12.77 -35.23 -0.45 0.62 16 2 C -0.07 0.20 2.82 36.01 0.10 0.30 16 3 Si 0.69 -2.95 29.78 -169.99 -5.06 -8.01 16 4 C -0.16 0.41 5.39 -104.60 -0.56 -0.16 16 5 C -0.03 0.11 8.66 -39.60 -0.34 -0.23 16 6 C -0.21 0.86 9.04 -39.43 -0.36 0.50 16 7 C 0.20 0.00 6.67 -39.21 -0.26 -0.26 16 8 O -0.25 -0.36 7.68 -49.78 -0.38 -0.75 16 9 C 0.03 -0.11 5.22 36.01 0.19 0.08 16 10 C 0.51 -0.34 7.91 -10.98 -0.09 -0.42 16 11 O -0.49 -2.63 16.10 -14.35 -0.23 -2.86 16 12 N -0.72 3.13 5.36 -52.93 -0.28 2.84 16 13 C 0.13 -0.42 4.24 -67.03 -0.28 -0.70 16 14 H 0.12 -0.06 7.46 -51.93 -0.39 -0.45 16 15 C -0.15 0.51 7.45 -25.83 -0.19 0.32 16 16 C -0.12 0.50 3.82 -89.81 -0.34 0.15 16 17 H 0.12 -0.19 7.94 -51.93 -0.41 -0.60 16 18 C 0.13 -0.59 6.28 -4.04 -0.03 -0.61 16 19 N -0.29 0.14 3.44 -61.26 -0.21 -0.07 16 20 C -0.05 0.08 11.57 -17.05 -0.20 -0.12 16 21 C -0.05 -0.05 12.05 -17.73 -0.21 -0.26 16 22 N -0.27 -1.28 12.41 30.24 0.38 -0.90 16 23 N -0.08 -0.30 12.78 60.35 0.77 0.47 16 24 C -0.13 0.76 7.39 -25.92 -0.19 0.57 16 25 C -0.07 -0.17 6.87 -79.81 -0.55 -0.72 16 26 N 0.03 0.17 4.45 34.03 0.15 0.33 16 27 O -0.18 -1.24 18.45 -29.46 -0.54 -1.78 16 28 O -0.12 -0.98 17.24 -36.49 -0.63 -1.61 16 29 C 0.01 0.00 9.12 -39.60 -0.36 -0.36 16 30 H 0.38 -2.29 8.70 45.56 0.40 -1.89 16 31 H 0.12 -0.30 7.96 -51.93 -0.41 -0.71 16 32 H -0.25 0.10 7.11 56.52 0.40 0.50 16 33 H -0.25 0.63 7.11 56.52 0.40 1.03 16 34 H 0.15 -1.07 4.87 -52.49 -0.26 -1.33 16 35 H 0.16 -1.22 6.30 -52.49 -0.33 -1.55 16 36 H 0.10 -0.69 7.65 -51.92 -0.40 -1.09 16 37 H 0.10 -0.72 7.67 -51.93 -0.40 -1.12 16 38 H 0.40 -3.28 8.73 -40.82 -0.36 -3.64 16 39 H 0.09 -0.45 7.92 -51.93 -0.41 -0.86 16 40 H 0.08 -0.07 8.14 -51.93 -0.42 -0.49 16 41 H 0.10 -0.56 8.14 -51.93 -0.42 -0.98 16 42 H 0.11 -0.81 7.80 -51.93 -0.41 -1.21 16 43 H 0.19 -1.07 8.06 -52.49 -0.42 -1.49 16 44 H 0.19 -0.38 8.06 -52.49 -0.42 -0.80 16 45 H 0.09 -0.45 8.14 -51.92 -0.42 -0.88 16 46 H 0.09 -0.74 8.08 -51.93 -0.42 -1.16 16 47 H 0.16 0.04 7.61 -52.49 -0.40 -0.36 16 LS Contribution 408.40 15.07 6.15 6.15 Total: 0.00 -17.05 408.40 -9.52 -26.57 By element: Atomic # 1 Polarization: -13.59 SS G_CDS: -5.50 Total: -19.09 kcal Atomic # 6 Polarization: 1.76 SS G_CDS: -3.68 Total: -1.91 kcal Atomic # 7 Polarization: 1.87 SS G_CDS: 0.80 Total: 2.67 kcal Atomic # 8 Polarization: -4.14 SS G_CDS: -2.24 Total: -6.37 kcal Atomic # 14 Polarization: -2.95 SS G_CDS: -5.06 Total: -8.01 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -17.05 -9.52 -26.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14928172_4549638.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.017 kcal (2) G-P(sol) polarization free energy of solvation -17.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds