Wall clock time and date at job start Sun Mar 7 2021 00:35:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33818 * 122.44617 * 2 1 4 4 C 1.50700 * 124.52278 * 0.02562 * 3 2 1 5 5 O 1.42896 * 109.46989 * 29.99791 * 4 3 2 6 6 Si 1.86299 * 109.47275 * 149.99652 * 4 3 2 7 7 S 1.70615 * 110.95593 * 179.70589 * 3 2 1 8 8 C 1.75835 * 91.56163 * 0.35661 * 7 3 2 9 9 C 1.46583 * 125.46093 * 179.91347 * 8 7 3 10 10 O 1.21696 * 120.00322 * 179.69933 * 9 8 7 11 11 N 1.34776 * 119.99652 * 359.69291 * 9 8 7 12 12 C 1.46502 * 120.00099 * 180.02562 * 11 9 8 13 13 H 1.09006 * 112.84587 * 23.80491 * 12 11 9 14 14 C 1.53778 * 113.61564 * 155.00144 * 12 11 9 15 15 C 1.53783 * 87.08071 * 139.98449 * 14 12 11 16 16 H 1.08997 * 113.61788 * 89.20071 * 15 14 12 17 17 C 1.53004 * 113.61220 * 220.01826 * 15 14 12 18 18 N 1.46498 * 109.47171 * 184.99834 * 17 15 14 19 19 C 1.35308 * 125.86965 * 124.99697 * 18 17 15 20 20 C 1.35347 * 106.17713 * 179.97438 * 19 18 17 21 21 N 1.33774 * 106.49812 * 0.02562 * 20 19 18 22 22 N 1.28637 * 108.88333 * 0.02562 * 21 20 19 23 23 C 1.53777 * 87.08069 * 334.56583 * 15 14 12 24 24 C 1.36648 * 109.08090 * 359.65132 * 8 7 3 25 25 H 1.08998 * 109.46940 * 269.99362 * 1 2 3 26 26 H 1.08996 * 109.47699 * 29.99702 * 1 2 3 27 27 H 1.09004 * 109.46636 * 149.99809 * 1 2 3 28 28 H 1.09000 * 109.47008 * 269.99660 * 4 3 2 29 29 H 0.96709 * 114.00161 * 179.97438 * 5 4 3 30 30 H 1.48497 * 110.00421 * 178.68056 * 6 4 3 31 31 H 1.48501 * 110.00333 * 300.00328 * 6 4 3 32 32 H 0.96999 * 120.00318 * 0.02562 * 11 9 8 33 33 H 1.08993 * 113.61776 * 25.43101 * 14 12 11 34 34 H 1.09000 * 113.68965 * 254.54247 * 14 12 11 35 35 H 1.09002 * 109.46649 * 64.99868 * 17 15 14 36 36 H 1.09000 * 109.47178 * 305.00145 * 17 15 14 37 37 H 1.07997 * 126.91159 * 359.97438 * 19 18 17 38 38 H 1.08002 * 126.75556 * 180.02562 * 20 19 18 39 39 H 1.09001 * 113.61397 * 139.98252 * 23 15 14 40 40 H 1.09001 * 113.61589 * 270.88880 * 23 15 14 41 41 H 1.08004 * 123.34795 * 180.23924 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2249 1.1293 0.0000 4 6 1.6354 2.5162 0.0006 5 8 0.3755 2.4979 0.6746 6 14 2.7925 3.6826 0.8787 7 16 3.8969 0.7894 0.0082 8 6 3.5938 -0.9426 0.0007 9 6 4.6232 -1.9861 0.0011 10 8 4.3003 -3.1594 0.0011 11 7 5.9273 -1.6460 0.0014 12 6 6.9563 -2.6889 0.0013 13 1 6.5994 -3.6355 -0.4045 14 6 8.2981 -2.2303 -0.5938 15 6 8.9796 -3.0280 0.5306 16 1 9.1779 -4.0676 0.2701 17 6 10.1979 -2.3230 1.1305 18 7 10.8442 -3.2077 2.1030 19 6 12.1440 -3.5837 2.0914 20 6 12.3112 -4.3955 3.1614 21 7 11.1211 -4.4759 3.7669 22 7 10.2730 -3.7617 3.1147 23 6 7.6904 -2.8302 1.3452 24 6 2.2447 -1.1600 0.0003 25 1 -0.3633 -0.0001 1.0277 26 1 -0.3634 0.8899 -0.5137 27 1 -0.3633 -0.8900 -0.5139 28 1 1.4929 2.8508 -1.0270 29 1 -0.0624 3.3593 0.7135 30 1 2.2376 5.0598 0.8584 31 1 2.9952 3.2373 2.2808 32 1 6.1847 -0.7108 0.0017 33 1 8.4608 -1.1547 -0.5266 34 1 8.4934 -2.6264 -1.5903 35 1 9.8791 -1.4071 1.6281 36 1 10.9036 -2.0784 0.3366 37 1 12.8966 -3.2942 1.3730 38 1 13.2256 -4.8826 3.4664 39 1 7.3939 -3.7114 1.9141 40 1 7.6869 -1.9185 1.9426 41 1 1.8020 -2.1451 -0.0001 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14928172_6739946.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:35:28 Heat of formation + Delta-G solvation = 94.285459 kcal Electronic energy + Delta-G solvation = -25354.415930 eV Core-core repulsion = 21558.970496 eV Total energy + Delta-G solvation = -3795.445433 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -44.13177 -41.34609 -40.10162 -39.33688 -37.50757 -35.80547 -34.39983 -32.27148 -31.90536 -30.23183 -29.56905 -26.83737 -26.71411 -24.85621 -23.93587 -23.46485 -22.31400 -21.79378 -20.89581 -19.95463 -19.19028 -18.68102 -18.42585 -17.56484 -17.14961 -17.01696 -16.36629 -16.27142 -16.05946 -15.89473 -15.68812 -15.24886 -14.99436 -14.64985 -14.53246 -14.28426 -14.16259 -13.76747 -13.45622 -13.26803 -13.22148 -13.08815 -12.95752 -12.60650 -12.59712 -12.30910 -12.14265 -12.00915 -11.98822 -11.90717 -11.42474 -11.25386 -10.98006 -10.82388 -10.29173 -10.21398 -9.61668 -9.35636 -5.14124 -0.67599 0.27438 0.66281 0.72721 1.04566 1.32709 1.52812 1.55213 1.66084 1.89868 2.00155 2.04475 3.22659 3.30995 3.43399 3.56650 3.62991 3.66449 3.72342 3.78542 4.04051 4.10550 4.17967 4.28439 4.31887 4.36929 4.38371 4.40603 4.55662 4.66525 4.70975 4.79101 4.84310 4.85779 4.87777 4.96432 4.97504 5.05991 5.12505 5.30592 5.38170 5.42350 5.48767 5.76346 6.34371 6.54667 7.01830 7.58247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.112 4.112 3 C -0.206 4.206 4 C -0.042 4.042 5 O -0.542 6.542 6 Si 0.736 3.264 7 S 0.280 5.720 8 C -0.289 4.289 9 C 0.590 3.410 10 O -0.575 6.575 11 N -0.700 5.700 12 C 0.113 3.887 13 H 0.093 0.907 14 C -0.108 4.108 15 C -0.113 4.113 16 H 0.088 0.912 17 C 0.118 3.882 18 N -0.286 5.286 19 C -0.033 4.033 20 C -0.075 4.075 21 N -0.326 5.326 22 N -0.122 5.122 23 C -0.144 4.144 24 C -0.063 4.063 25 H 0.062 0.938 26 H 0.083 0.917 27 H 0.061 0.939 28 H 0.115 0.885 29 H 0.398 0.602 30 H -0.258 1.258 31 H -0.294 1.294 32 H 0.414 0.586 33 H 0.126 0.874 34 H 0.097 0.903 35 H 0.116 0.884 36 H 0.153 0.847 37 H 0.237 0.763 38 H 0.208 0.792 39 H 0.045 0.955 40 H 0.098 0.902 41 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.113 10.514 -8.164 14.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.124 4.124 3 C -0.325 4.325 4 C -0.152 4.152 5 O -0.353 6.353 6 Si 0.637 3.363 7 S 0.549 5.451 8 C -0.409 4.409 9 C 0.377 3.623 10 O -0.457 6.457 11 N -0.351 5.351 12 C 0.008 3.992 13 H 0.112 0.888 14 C -0.146 4.146 15 C -0.133 4.133 16 H 0.106 0.894 17 C -0.001 4.001 18 N -0.080 5.080 19 C -0.185 4.185 20 C -0.233 4.233 21 N -0.192 5.192 22 N -0.102 5.102 23 C -0.183 4.183 24 C -0.098 4.098 25 H 0.081 0.919 26 H 0.102 0.898 27 H 0.080 0.920 28 H 0.132 0.868 29 H 0.250 0.750 30 H -0.182 1.182 31 H -0.220 1.220 32 H 0.252 0.748 33 H 0.145 0.855 34 H 0.116 0.884 35 H 0.134 0.866 36 H 0.171 0.829 37 H 0.254 0.746 38 H 0.225 0.775 39 H 0.064 0.936 40 H 0.116 0.884 41 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 6.138 10.404 -6.668 13.798 hybrid contribution -1.874 -0.692 0.075 1.999 sum 4.264 9.712 -6.594 12.489 Atomic orbital electron populations 1.20466 0.88513 1.02804 1.02261 1.18761 0.98970 0.90740 1.03961 1.23743 0.99613 0.99244 1.09911 1.24299 0.91524 0.96322 1.03071 1.86657 1.32067 1.37225 1.79378 0.94842 0.84269 0.76620 0.80565 1.82101 1.00407 0.95185 1.67446 1.24639 0.97548 0.98845 1.19875 1.17227 0.82836 0.86934 0.75276 1.90828 1.82454 1.20298 1.52088 1.45699 1.04196 1.10888 1.74279 1.22599 0.86682 0.92143 0.97787 0.88845 1.23312 0.90366 1.02600 0.98358 1.22508 0.92623 1.00603 0.97575 0.89380 1.22616 0.96190 0.91124 0.90179 1.47891 1.08393 1.32219 1.19541 1.24432 0.88072 1.02170 1.03811 1.24232 0.98489 1.04084 0.96503 1.75098 1.01679 1.17396 1.24989 1.78282 1.22573 1.10638 0.98658 1.23547 0.95480 1.02556 0.96713 1.20741 0.91673 1.00062 0.97281 0.91940 0.89786 0.92049 0.86756 0.75016 1.18224 1.22049 0.74798 0.85541 0.88449 0.86623 0.82937 0.74640 0.77490 0.93638 0.88350 0.84140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.24 8.70 71.24 0.62 0.38 16 2 C -0.11 -0.50 5.75 -21.05 -0.12 -0.63 16 3 C -0.21 -0.10 5.57 24.68 0.14 0.04 16 4 C -0.04 0.17 2.75 71.24 0.20 0.37 16 5 O -0.54 1.22 9.81 -148.98 -1.46 -0.24 16 6 Si 0.74 -3.79 31.30 68.60 2.15 -1.65 16 7 S 0.28 -0.94 19.78 -56.49 -1.12 -2.06 16 8 C -0.29 -1.35 6.45 24.08 0.16 -1.19 16 9 C 0.59 4.36 7.78 86.42 0.67 5.03 16 10 O -0.58 -9.67 16.44 -4.34 -0.07 -9.74 16 11 N -0.70 0.83 5.35 -444.09 -2.38 -1.54 16 12 C 0.11 -0.20 4.24 45.52 0.19 0.00 16 13 H 0.09 0.39 7.46 -2.38 -0.02 0.37 16 14 C -0.11 1.19 7.39 31.12 0.23 1.43 16 15 C -0.11 0.78 3.76 -10.27 -0.04 0.74 16 16 H 0.09 -0.28 8.14 -2.39 -0.02 -0.30 16 17 C 0.12 -1.19 6.29 86.38 0.54 -0.65 16 18 N -0.29 0.19 3.44 -347.74 -1.20 -1.01 16 19 C -0.03 0.13 11.57 83.49 0.97 1.10 16 20 C -0.08 -0.21 12.05 83.73 1.01 0.80 16 21 N -0.33 -3.94 12.41 -58.25 -0.72 -4.66 16 22 N -0.12 -1.16 12.93 37.02 0.48 -0.68 16 23 C -0.14 0.13 7.43 31.12 0.23 0.36 16 24 C -0.06 -0.44 9.80 21.72 0.21 -0.23 16 25 H 0.06 0.28 8.14 -2.39 -0.02 0.26 16 26 H 0.08 0.11 6.42 -2.39 -0.02 0.10 16 27 H 0.06 0.13 8.13 -2.38 -0.02 0.11 16 28 H 0.11 -1.04 7.96 -2.39 -0.02 -1.06 16 29 H 0.40 -4.16 8.74 -74.05 -0.65 -4.80 16 30 H -0.26 0.62 7.11 99.48 0.71 1.32 16 31 H -0.29 -1.06 7.11 99.48 0.71 -0.36 16 32 H 0.41 -3.38 7.84 -92.71 -0.73 -4.10 16 33 H 0.13 -2.15 8.08 -2.39 -0.02 -2.17 16 34 H 0.10 -1.18 8.14 -2.39 -0.02 -1.20 16 35 H 0.12 -1.42 7.84 -2.39 -0.02 -1.43 16 36 H 0.15 -2.79 8.07 -2.39 -0.02 -2.81 16 37 H 0.24 -3.43 8.06 -2.91 -0.02 -3.46 16 38 H 0.21 -0.69 8.06 -2.91 -0.02 -0.71 16 39 H 0.04 0.30 8.14 -2.39 -0.02 0.28 16 40 H 0.10 -0.28 7.90 -2.39 -0.02 -0.30 16 41 H 0.14 1.20 8.06 -2.91 -0.02 1.17 16 Total: 0.00 -33.56 360.39 0.43 -33.12 By element: Atomic # 1 Polarization: -18.83 SS G_CDS: -0.26 Total: -19.09 kcal Atomic # 6 Polarization: 2.53 SS G_CDS: 5.01 Total: 7.54 kcal Atomic # 7 Polarization: -4.07 SS G_CDS: -3.82 Total: -7.89 kcal Atomic # 8 Polarization: -8.45 SS G_CDS: -1.53 Total: -9.98 kcal Atomic # 14 Polarization: -3.79 SS G_CDS: 2.15 Total: -1.65 kcal Atomic # 16 Polarization: -0.94 SS G_CDS: -1.12 Total: -2.06 kcal Total: -33.56 0.43 -33.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14928172_6739946.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.409 kcal (2) G-P(sol) polarization free energy of solvation -33.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds