Wall clock time and date at job start Sun Mar 7 2021 01:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42895 * 109.46971 * 2 1 4 4 C 1.35903 * 116.99930 * 84.82022 * 3 2 1 5 5 C 1.38733 * 120.05594 * 174.62678 * 4 3 2 6 6 C 1.38142 * 119.94584 * 180.02562 * 5 4 3 7 7 C 1.38263 * 120.05815 * 0.02562 * 6 5 4 8 8 C 1.50699 * 119.95049 * 179.97438 * 7 6 5 9 9 O 1.42902 * 109.46913 * 299.99860 * 8 7 6 10 10 Si 1.86296 * 109.47411 * 180.02562 * 8 7 6 11 11 C 1.38271 * 120.10925 * 0.24814 * 7 6 5 12 12 C 1.38147 * 120.05354 * 359.45416 * 11 7 6 13 13 C 1.50693 * 109.47253 * 240.00028 * 2 1 3 14 14 O 1.21284 * 120.00275 * 119.99979 * 13 2 1 15 15 N 1.34783 * 119.99853 * 299.99761 * 13 2 1 16 16 C 1.46499 * 119.99837 * 179.97438 * 15 13 2 17 17 C 1.52993 * 109.47337 * 180.02562 * 16 15 13 18 18 H 1.09005 * 109.47432 * 305.00192 * 17 16 15 19 19 C 1.52999 * 109.47148 * 65.00021 * 17 16 15 20 20 C 1.53001 * 109.47386 * 179.97438 * 19 17 16 21 21 C 1.52995 * 109.47408 * 300.00201 * 20 19 17 22 22 H 1.09000 * 109.47282 * 300.00168 * 21 20 19 23 23 C 1.53001 * 109.47408 * 179.97438 * 21 20 19 24 24 O 1.42901 * 109.47082 * 64.99869 * 23 21 20 25 25 C 1.52999 * 109.47011 * 59.99570 * 21 20 19 26 26 C 1.52995 * 109.47520 * 185.00144 * 17 16 15 27 27 H 1.08996 * 109.47473 * 60.00252 * 1 2 3 28 28 H 1.09007 * 109.47046 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47441 * 299.99847 * 1 2 3 30 30 H 1.09003 * 109.46851 * 119.99809 * 2 1 3 31 31 H 1.08003 * 120.02558 * 359.97438 * 5 4 3 32 32 H 1.08001 * 119.97247 * 179.97438 * 6 5 4 33 33 H 1.08999 * 109.46908 * 59.99662 * 8 7 6 34 34 H 0.96701 * 114.00318 * 300.00351 * 9 8 7 35 35 H 1.48500 * 110.00494 * 58.67664 * 10 8 7 36 36 H 1.48502 * 110.00186 * 180.02562 * 10 8 7 37 37 H 1.08000 * 119.97479 * 179.70568 * 11 7 6 38 38 H 1.08003 * 120.03188 * 180.24941 * 12 11 7 39 39 H 0.97000 * 120.00236 * 0.02562 * 15 13 2 40 40 H 1.09003 * 109.47520 * 300.00456 * 16 15 13 41 41 H 1.09008 * 109.47001 * 60.00282 * 16 15 13 42 42 H 1.08998 * 109.47254 * 300.00596 * 19 17 16 43 43 H 1.09001 * 109.47075 * 60.00503 * 19 17 16 44 44 H 1.09004 * 109.46968 * 179.97438 * 20 19 17 45 45 H 1.09000 * 109.47037 * 60.00519 * 20 19 17 46 46 H 1.09001 * 109.47423 * 185.00336 * 23 21 20 47 47 H 1.09004 * 109.46603 * 304.99729 * 23 21 20 48 48 H 0.96705 * 113.99545 * 180.02562 * 24 23 21 49 49 H 1.08998 * 109.47254 * 179.97438 * 25 21 20 50 50 H 1.09005 * 109.47281 * 60.00388 * 25 21 20 51 51 H 1.09000 * 109.47282 * 300.00392 * 26 17 16 52 52 H 1.09004 * 109.47102 * 60.00356 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 2.1089 1.9654 1.2060 5 6 2.6681 3.2320 1.2922 6 6 2.7717 3.8580 2.5192 7 6 2.3191 3.2231 3.6610 8 6 2.4339 3.9080 4.9985 9 8 3.8085 4.1820 5.2769 10 14 1.7413 2.7991 6.3256 11 6 1.7665 1.9583 3.5786 12 6 1.6550 1.3306 2.3530 13 6 2.0323 -0.7104 -1.2304 14 8 2.7296 -0.1210 -2.0288 15 7 1.7068 -2.0008 -1.4436 16 6 2.1947 -2.6912 -2.6401 17 6 1.6844 -4.1335 -2.6404 18 1 1.9728 -4.6212 -1.7092 19 6 0.1595 -4.1350 -2.7658 20 6 -0.3508 -5.5774 -2.7668 21 6 0.2588 -6.3333 -3.9490 22 1 -0.0295 -5.8453 -4.8800 23 6 -0.2510 -7.7759 -3.9495 24 8 -1.6608 -7.7827 -4.1829 25 6 1.7837 -6.3319 -3.8236 26 6 2.2940 -4.8900 -3.8223 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.0229 3.7280 0.4008 32 1 3.2074 4.8440 2.5869 33 1 1.8742 4.8430 4.9770 34 1 4.3677 3.3937 5.3110 35 1 2.4757 1.5085 6.3437 36 1 1.8481 3.4634 7.6494 37 1 1.4180 1.4624 4.4725 38 1 1.2196 0.3443 2.2885 39 1 1.1488 -2.4721 -0.8053 40 1 1.8310 -2.1773 -3.5299 41 1 3.2847 -2.6911 -2.6405 42 1 -0.2748 -3.5960 -1.9238 43 1 -0.1289 -3.6474 -3.6970 44 1 -1.4372 -5.5783 -2.8556 45 1 -0.0625 -6.0654 -1.8357 46 1 0.2504 -8.3382 -4.7372 47 1 -0.0402 -8.2360 -2.9841 48 1 -2.0530 -8.6666 -4.1961 49 1 2.2180 -6.8708 -4.6655 50 1 2.0722 -6.8199 -2.8925 51 1 2.0056 -4.4024 -4.7535 52 1 3.3803 -4.8891 -3.7329 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14939082_10157680.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 01:59:14 Heat of formation + Delta-G solvation = -146.022097 kcal Electronic energy + Delta-G solvation = -30660.220712 eV Core-core repulsion = 26397.719047 eV Total energy + Delta-G solvation = -4262.501665 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 350.197 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.81799 -40.80899 -39.98828 -39.07244 -37.62714 -37.26911 -35.89965 -33.75926 -32.52918 -31.83010 -31.69866 -31.47208 -28.20336 -26.69550 -25.58383 -24.62676 -24.00064 -23.55817 -22.39413 -21.72113 -21.35149 -20.68182 -19.54575 -18.73310 -18.22710 -18.15622 -17.20155 -16.92673 -16.80565 -16.46351 -16.28948 -16.11953 -15.83970 -15.78958 -15.61854 -15.22467 -15.05592 -14.81473 -14.65144 -14.53595 -14.49000 -14.08883 -13.98598 -13.66210 -13.50910 -13.38550 -13.26900 -13.08722 -12.86634 -12.82380 -12.51536 -12.27016 -12.14164 -12.03412 -12.02762 -11.90290 -11.59523 -11.39861 -11.18619 -11.06533 -10.91264 -10.76629 -10.58706 -10.22528 -10.04461 -9.23300 -4.90386 0.26112 0.29590 1.34140 1.38692 1.52268 1.62016 1.99006 2.49869 2.64037 3.31200 3.43270 3.46079 3.62945 3.66282 3.71913 3.73901 3.76916 3.83194 3.85933 3.93952 4.10135 4.18100 4.28570 4.30835 4.36370 4.45549 4.49653 4.51100 4.53984 4.59807 4.61217 4.64434 4.67849 4.69839 4.72686 4.77160 4.80714 4.96243 4.96630 5.09748 5.10806 5.16309 5.18469 5.21589 5.24806 5.25114 5.28934 5.35947 5.47042 5.48476 5.57026 5.69584 6.25263 6.43719 6.50443 6.89025 7.07772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.064 3.936 3 O -0.314 6.314 4 C 0.121 3.879 5 C -0.167 4.167 6 C -0.059 4.059 7 C -0.158 4.158 8 C -0.083 4.083 9 O -0.552 6.552 10 Si 0.772 3.228 11 C -0.074 4.074 12 C -0.202 4.202 13 C 0.513 3.487 14 O -0.574 6.574 15 N -0.705 5.705 16 C 0.125 3.875 17 C -0.086 4.086 18 H 0.095 0.905 19 C -0.113 4.113 20 C -0.105 4.105 21 C -0.091 4.091 22 H 0.059 0.941 23 C 0.075 3.925 24 O -0.596 6.596 25 C -0.107 4.107 26 C -0.112 4.112 27 H 0.058 0.942 28 H 0.110 0.890 29 H 0.091 0.909 30 H 0.129 0.871 31 H 0.125 0.875 32 H 0.134 0.866 33 H 0.122 0.878 34 H 0.385 0.615 35 H -0.278 1.278 36 H -0.307 1.307 37 H 0.155 0.845 38 H 0.163 0.837 39 H 0.419 0.581 40 H 0.055 0.945 41 H 0.060 0.940 42 H 0.077 0.923 43 H 0.052 0.948 44 H 0.055 0.945 45 H 0.071 0.929 46 H 0.049 0.951 47 H 0.056 0.944 48 H 0.395 0.605 49 H 0.068 0.932 50 H 0.075 0.925 51 H 0.059 0.941 52 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.826 -8.526 3.393 10.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.004 3.996 3 O -0.228 6.228 4 C 0.076 3.924 5 C -0.186 4.186 6 C -0.077 4.077 7 C -0.159 4.159 8 C -0.191 4.191 9 O -0.360 6.360 10 Si 0.677 3.323 11 C -0.091 4.091 12 C -0.220 4.220 13 C 0.299 3.701 14 O -0.452 6.452 15 N -0.359 5.359 16 C 0.002 3.998 17 C -0.105 4.105 18 H 0.113 0.887 19 C -0.151 4.151 20 C -0.143 4.143 21 C -0.110 4.110 22 H 0.078 0.922 23 C -0.002 4.002 24 O -0.405 6.405 25 C -0.144 4.144 26 C -0.150 4.150 27 H 0.077 0.923 28 H 0.128 0.872 29 H 0.110 0.890 30 H 0.146 0.854 31 H 0.143 0.857 32 H 0.151 0.849 33 H 0.140 0.860 34 H 0.235 0.765 35 H -0.205 1.205 36 H -0.236 1.236 37 H 0.172 0.828 38 H 0.180 0.820 39 H 0.257 0.743 40 H 0.073 0.927 41 H 0.079 0.921 42 H 0.095 0.905 43 H 0.071 0.929 44 H 0.074 0.926 45 H 0.089 0.911 46 H 0.067 0.933 47 H 0.074 0.926 48 H 0.244 0.756 49 H 0.086 0.914 50 H 0.094 0.906 51 H 0.078 0.922 52 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.249 -7.240 3.318 9.026 hybrid contribution 1.101 -0.646 -0.359 1.326 sum -3.148 -7.886 2.959 8.992 Atomic orbital electron populations 1.22395 0.90247 1.05795 1.04605 1.22444 0.97339 0.82061 0.97722 1.86194 1.81477 1.27080 1.28028 1.19252 0.95781 0.92928 0.84448 1.20623 1.04398 0.94434 0.99139 1.20905 0.96451 0.99760 0.90595 1.20292 1.03607 0.96098 0.95865 1.25256 0.86238 1.08251 0.99342 1.86569 1.19014 1.37454 1.92938 0.94137 0.89358 0.74862 0.73893 1.21064 0.96539 0.93575 0.97910 1.21491 1.06316 1.02783 0.91434 1.20598 0.79822 0.82578 0.87132 1.90755 1.39214 1.67105 1.48168 1.45737 1.53512 1.10571 1.26114 1.21436 0.98874 0.92555 0.86958 1.21341 0.95750 0.92708 1.00668 0.88714 1.21612 0.94316 0.96818 1.02315 1.21457 0.99870 0.95077 0.97883 1.21190 0.95628 0.94728 0.99422 0.92226 1.22320 0.80984 0.97002 0.99903 1.86434 1.22625 1.35725 1.95671 1.21448 0.93336 0.96694 1.02964 1.21475 1.00567 0.95226 0.97766 0.92303 0.87152 0.89035 0.85380 0.85720 0.84862 0.86046 0.76549 1.20454 1.23581 0.82841 0.82005 0.74277 0.92693 0.92136 0.90480 0.92889 0.92601 0.91066 0.93281 0.92594 0.75581 0.91363 0.90619 0.92245 0.90866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 1.16 9.07 71.98 0.65 1.81 16 2 C 0.06 -0.07 2.65 29.85 0.08 0.01 16 3 O -0.31 -2.26 9.33 -73.42 -0.69 -2.94 16 4 C 0.12 0.51 6.60 22.51 0.15 0.66 16 5 C -0.17 -0.93 9.99 22.37 0.22 -0.71 16 6 C -0.06 -0.19 9.60 22.25 0.21 0.03 16 7 C -0.16 -0.03 5.39 -19.85 -0.11 -0.14 16 8 C -0.08 0.06 2.82 71.24 0.20 0.26 16 9 O -0.55 -1.67 12.77 -148.98 -1.90 -3.57 16 10 Si 0.77 -2.48 29.78 68.60 2.04 -0.44 16 11 C -0.07 0.20 8.66 22.26 0.19 0.40 16 12 C -0.20 0.42 8.24 22.37 0.18 0.60 16 13 C 0.51 2.14 7.23 87.65 0.63 2.77 16 14 O -0.57 -9.20 16.50 16.00 0.26 -8.94 16 15 N -0.70 2.52 5.18 -463.06 -2.40 0.12 16 16 C 0.13 -0.22 5.06 86.38 0.44 0.22 16 17 C -0.09 0.54 2.23 -10.80 -0.02 0.52 16 18 H 0.09 -0.83 8.14 -2.38 -0.02 -0.85 16 19 C -0.11 0.63 5.08 30.59 0.16 0.78 16 20 C -0.11 0.41 5.10 30.59 0.16 0.57 16 21 C -0.09 0.25 2.43 -10.80 -0.03 0.22 16 22 H 0.06 0.06 8.14 -2.39 -0.02 0.04 16 23 C 0.08 -0.23 6.43 71.98 0.46 0.23 16 24 O -0.60 0.00 13.20 -148.98 -1.97 -1.96 16 25 C -0.11 0.58 5.20 30.58 0.16 0.74 16 26 C -0.11 0.55 5.20 30.58 0.16 0.71 16 27 H 0.06 -0.12 8.14 -2.39 -0.02 -0.14 16 28 H 0.11 -1.45 7.56 -2.38 -0.02 -1.47 16 29 H 0.09 -0.77 6.90 -2.39 -0.02 -0.79 16 30 H 0.13 -0.94 6.31 -2.39 -0.02 -0.95 16 31 H 0.12 0.79 8.06 -2.91 -0.02 0.76 16 32 H 0.13 0.30 8.06 -2.91 -0.02 0.28 16 33 H 0.12 -0.22 7.96 -2.39 -0.02 -0.24 16 34 H 0.39 -0.98 8.70 -74.06 -0.64 -1.62 16 35 H -0.28 0.08 7.11 99.48 0.71 0.79 16 36 H -0.31 -1.60 7.11 99.48 0.71 -0.89 16 37 H 0.15 -1.24 4.87 -2.91 -0.01 -1.25 16 38 H 0.16 -1.42 5.43 -2.91 -0.02 -1.43 16 39 H 0.42 -4.61 7.07 -92.71 -0.66 -5.26 16 40 H 0.05 0.12 8.14 -2.39 -0.02 0.10 16 41 H 0.06 0.06 8.14 -2.38 -0.02 0.04 16 42 H 0.08 -0.66 7.18 -2.39 -0.02 -0.67 16 43 H 0.05 -0.12 8.14 -2.39 -0.02 -0.14 16 44 H 0.06 -0.01 7.82 -2.39 -0.02 -0.03 16 45 H 0.07 -0.41 8.14 -2.39 -0.02 -0.43 16 46 H 0.05 -0.20 8.14 -2.39 -0.02 -0.22 16 47 H 0.06 -0.30 8.14 -2.38 -0.02 -0.32 16 48 H 0.39 -3.18 9.12 -74.05 -0.68 -3.85 16 49 H 0.07 -0.36 8.14 -2.39 -0.02 -0.38 16 50 H 0.08 -0.53 8.14 -2.38 -0.02 -0.55 16 51 H 0.06 -0.17 8.14 -2.39 -0.02 -0.19 16 52 H 0.07 -0.39 8.14 -2.38 -0.02 -0.41 16 Total: 0.00 -26.41 408.84 -1.74 -28.15 By element: Atomic # 1 Polarization: -19.10 SS G_CDS: -0.99 Total: -20.10 kcal Atomic # 6 Polarization: 5.77 SS G_CDS: 3.90 Total: 9.67 kcal Atomic # 7 Polarization: 2.52 SS G_CDS: -2.40 Total: 0.12 kcal Atomic # 8 Polarization: -13.12 SS G_CDS: -4.29 Total: -17.41 kcal Atomic # 14 Polarization: -2.48 SS G_CDS: 2.04 Total: -0.44 kcal Total: -26.41 -1.74 -28.15 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14939082_10157680.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.871 kcal (2) G-P(sol) polarization free energy of solvation -26.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds