Wall clock time and date at job start Sun Mar 7 2021 01:59:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.35456 * 125.56667 * 2 1 4 4 C 1.50704 * 126.06433 * 0.05549 * 3 2 1 5 5 O 1.42901 * 109.46697 * 209.97464 * 4 3 2 6 6 Si 1.86297 * 109.46908 * 329.97093 * 4 3 2 7 7 C 1.39833 * 107.86987 * 180.02562 * 3 2 1 8 8 C 1.50701 * 126.46222 * 180.02562 * 7 3 2 9 9 C 1.37874 * 107.08165 * 0.02562 * 7 3 2 10 10 C 1.46677 * 126.23291 * 179.97438 * 9 7 3 11 11 O 1.21702 * 120.00152 * 359.97438 * 10 9 7 12 12 N 1.34772 * 120.00124 * 180.02562 * 10 9 7 13 13 C 1.46507 * 120.00342 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.47321 * 179.97438 * 13 12 10 15 15 H 1.08992 * 109.47280 * 305.00162 * 14 13 12 16 16 C 1.53002 * 109.46978 * 65.00089 * 14 13 12 17 17 C 1.52997 * 109.46978 * 180.02562 * 16 14 13 18 18 C 1.53006 * 109.47164 * 299.99874 * 17 16 14 19 19 H 1.08998 * 109.46505 * 299.99708 * 18 17 16 20 20 C 1.52992 * 109.47223 * 180.02562 * 18 17 16 21 21 O 1.42905 * 109.47641 * 64.99686 * 20 18 17 22 22 C 1.52997 * 109.47127 * 59.99836 * 18 17 16 23 23 C 1.52996 * 109.46975 * 184.99627 * 14 13 12 24 24 N 1.35541 * 125.56686 * 180.30972 * 2 1 3 25 25 H 1.09000 * 109.46957 * 89.99714 * 1 2 3 26 26 H 1.08998 * 109.47095 * 209.99899 * 1 2 3 27 27 H 1.09004 * 109.47212 * 330.00364 * 1 2 3 28 28 H 1.08995 * 109.47077 * 89.97477 * 4 3 2 29 29 H 0.96704 * 114.00254 * 60.00470 * 5 4 3 30 30 H 1.48507 * 109.99958 * 180.02562 * 6 4 3 31 31 H 1.48498 * 110.00551 * 301.32280 * 6 4 3 32 32 H 1.08994 * 109.46585 * 269.98732 * 8 7 3 33 33 H 1.09002 * 109.46775 * 29.98346 * 8 7 3 34 34 H 1.08995 * 109.47241 * 149.98063 * 8 7 3 35 35 H 0.97003 * 120.00351 * 359.97438 * 12 10 9 36 36 H 1.08994 * 109.46961 * 59.99195 * 13 12 10 37 37 H 1.09000 * 109.46503 * 299.99769 * 13 12 10 38 38 H 1.09002 * 109.47097 * 299.99801 * 16 14 13 39 39 H 1.09001 * 109.47142 * 59.99766 * 16 14 13 40 40 H 1.09001 * 109.47375 * 59.99908 * 17 16 14 41 41 H 1.09000 * 109.47140 * 179.97438 * 17 16 14 42 42 H 1.09001 * 109.47563 * 185.00049 * 20 18 17 43 43 H 1.09004 * 109.47313 * 304.99704 * 20 18 17 44 44 H 0.96695 * 114.00050 * 180.02562 * 21 20 18 45 45 H 1.09002 * 109.47153 * 180.02562 * 22 18 17 46 46 H 1.09001 * 109.46832 * 60.00321 * 22 18 17 47 47 H 1.09004 * 109.47368 * 60.00217 * 23 14 13 48 48 H 1.09001 * 109.47372 * 300.00372 * 23 14 13 49 49 H 0.97000 * 125.67001 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2948 1.1019 0.0000 4 6 1.8199 2.5321 0.0012 5 8 2.7769 3.3523 -0.6723 6 14 0.1803 2.6427 -0.8765 7 6 3.6270 0.6768 -0.0006 8 6 4.8486 1.5592 -0.0003 9 6 3.6122 -0.7019 -0.0015 10 6 4.7859 -1.5815 -0.0029 11 8 5.9050 -1.1030 -0.0038 12 7 4.6253 -2.9196 -0.0043 13 6 5.7976 -3.7982 -0.0062 14 6 5.3407 -5.2584 -0.0068 15 1 4.6706 -5.4297 0.8355 16 6 4.6051 -5.5620 -1.3136 17 6 4.1476 -7.0220 -1.3139 18 6 5.3666 -7.9385 -1.1899 19 1 6.0367 -7.7675 -2.0324 20 6 4.9092 -9.3984 -1.1909 21 8 4.3259 -9.7142 -2.4567 22 6 6.1022 -7.6348 0.1168 23 6 6.5599 -6.1743 0.1168 24 7 2.2953 -1.1025 -0.0060 25 1 -0.3633 0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5138 28 1 1.7058 2.8762 1.0291 29 1 2.9293 3.1030 -1.5941 30 1 -0.2986 4.0484 -0.8827 31 1 0.3153 2.1464 -2.2695 32 1 5.1430 1.7724 -1.0278 33 1 4.6220 2.4932 0.5140 34 1 5.6643 1.0503 0.5133 35 1 3.7334 -3.3011 -0.0039 36 1 6.3973 -3.6058 0.8833 37 1 6.3957 -3.6039 -0.8966 38 1 3.7365 -4.9095 -1.4017 39 1 5.2752 -5.3906 -2.1560 40 1 3.4774 -7.1929 -0.4715 41 1 3.6232 -7.2382 -2.2447 42 1 5.7664 -10.0479 -1.0137 43 1 4.1708 -9.5484 -0.4032 44 1 4.0124 -10.6260 -2.5288 45 1 6.9708 -8.2874 0.2049 46 1 5.4319 -7.8057 0.9592 47 1 7.0841 -5.9580 1.0477 48 1 7.2301 -6.0029 -0.7257 49 1 1.9833 -2.0210 -0.0106 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14939082_12297754.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 01:59:30 Heat of formation + Delta-G solvation = -105.571270 kcal Electronic energy + Delta-G solvation = -27962.180398 eV Core-core repulsion = 24082.915234 eV Total energy + Delta-G solvation = -3879.265164 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 323.193 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.67414 -40.70893 -39.79129 -37.86516 -37.64580 -35.92798 -33.68984 -33.43083 -32.51435 -31.73482 -29.27327 -28.71397 -27.10107 -26.25338 -24.60538 -23.73162 -22.35150 -21.74488 -20.91279 -20.64871 -20.34916 -19.33702 -18.21999 -17.71236 -16.98748 -16.81786 -16.66769 -16.40051 -16.05590 -15.91460 -15.57858 -15.32445 -14.98781 -14.86356 -14.77009 -14.56249 -14.32636 -14.10507 -13.93802 -13.77790 -13.68471 -13.48484 -13.22780 -13.15785 -13.12825 -12.85321 -12.60549 -12.53152 -12.32929 -12.07582 -11.94103 -11.83163 -11.43956 -11.30534 -11.09991 -11.07897 -10.80015 -10.61026 -10.28700 -9.53635 -8.97576 -4.76916 0.34702 1.23495 1.67173 1.70287 1.94622 2.07217 2.14693 2.25546 3.28718 3.44391 3.58956 3.69146 3.71824 3.83165 3.83726 3.96947 4.06563 4.14174 4.23047 4.28786 4.41741 4.45580 4.48523 4.51634 4.55458 4.62425 4.65411 4.66099 4.67541 4.73974 4.76987 4.78471 4.84734 4.88230 4.93331 5.06094 5.09996 5.12173 5.16587 5.20529 5.21648 5.26646 5.30877 5.34940 5.43242 5.53155 5.69340 5.82316 6.36549 6.51230 6.59957 6.87450 7.07213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.086 3.914 3 C -0.232 4.232 4 C -0.052 4.052 5 O -0.550 6.550 6 Si 0.761 3.239 7 C -0.071 4.071 8 C -0.081 4.081 9 C -0.082 4.082 10 C 0.585 3.415 11 O -0.570 6.570 12 N -0.715 5.715 13 C 0.127 3.873 14 C -0.086 4.086 15 H 0.092 0.908 16 C -0.112 4.112 17 C -0.105 4.105 18 C -0.091 4.091 19 H 0.059 0.941 20 C 0.076 3.924 21 O -0.597 6.597 22 C -0.107 4.107 23 C -0.112 4.112 24 N -0.517 5.517 25 H 0.101 0.899 26 H 0.118 0.882 27 H 0.118 0.882 28 H 0.114 0.886 29 H 0.380 0.620 30 H -0.305 1.305 31 H -0.293 1.293 32 H 0.060 0.940 33 H 0.069 0.931 34 H 0.055 0.945 35 H 0.409 0.591 36 H 0.062 0.938 37 H 0.055 0.945 38 H 0.070 0.930 39 H 0.052 0.948 40 H 0.071 0.929 41 H 0.055 0.945 42 H 0.050 0.950 43 H 0.056 0.944 44 H 0.395 0.605 45 H 0.069 0.931 46 H 0.075 0.925 47 H 0.074 0.926 48 H 0.059 0.941 49 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.035 -8.154 2.669 11.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.034 4.034 3 C -0.238 4.238 4 C -0.161 4.161 5 O -0.357 6.357 6 Si 0.666 3.334 7 C -0.080 4.080 8 C -0.138 4.138 9 C -0.194 4.194 10 C 0.374 3.626 11 O -0.450 6.450 12 N -0.367 5.367 13 C 0.003 3.997 14 C -0.105 4.105 15 H 0.111 0.889 16 C -0.150 4.150 17 C -0.142 4.142 18 C -0.109 4.109 19 H 0.078 0.922 20 C -0.002 4.002 21 O -0.405 6.405 22 C -0.144 4.144 23 C -0.150 4.150 24 N -0.115 5.115 25 H 0.120 0.880 26 H 0.136 0.864 27 H 0.136 0.864 28 H 0.132 0.868 29 H 0.228 0.772 30 H -0.234 1.234 31 H -0.219 1.219 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.073 0.927 35 H 0.245 0.755 36 H 0.081 0.919 37 H 0.073 0.927 38 H 0.089 0.911 39 H 0.071 0.929 40 H 0.090 0.910 41 H 0.074 0.926 42 H 0.068 0.932 43 H 0.074 0.926 44 H 0.245 0.755 45 H 0.088 0.912 46 H 0.094 0.906 47 H 0.093 0.907 48 H 0.078 0.922 49 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges -7.476 -6.817 2.473 10.415 hybrid contribution 1.049 -0.795 -0.843 1.563 sum -6.427 -7.612 1.630 10.094 Atomic orbital electron populations 1.20715 0.84397 1.05751 1.05686 1.20713 0.95098 0.84796 1.02757 1.19690 0.92447 0.95792 1.15886 1.24644 1.02060 0.86581 1.02801 1.86522 1.62136 1.57593 1.29434 0.94490 0.79080 0.79861 0.79949 1.19927 0.95444 0.91446 1.01212 1.20213 0.94020 0.97942 1.01596 1.19894 0.83816 0.93650 1.22028 1.17234 0.87244 0.82158 0.75937 1.90821 1.25947 1.75921 1.52291 1.45733 1.10868 1.04791 1.75306 1.21430 0.87393 0.89154 1.01701 1.21340 0.98315 0.91562 0.99246 0.88928 1.21594 1.00004 0.96596 0.96772 1.21455 0.96948 0.93751 1.02070 1.21184 0.97514 0.93626 0.98606 0.92240 1.22315 0.96892 0.95893 0.85086 1.86432 1.81843 1.36203 1.36016 1.21468 1.00289 0.96121 0.96540 1.21491 0.96669 0.94171 1.02636 1.41692 1.03954 1.09300 1.56602 0.88045 0.86372 0.86435 0.86815 0.77203 1.23389 1.21947 0.92168 0.91245 0.92653 0.75491 0.91947 0.92650 0.91128 0.92949 0.91016 0.92628 0.93168 0.92551 0.75549 0.91199 0.90584 0.90741 0.92178 0.72584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 1.44 8.21 71.23 0.59 2.02 16 2 C 0.09 -0.35 6.84 41.34 0.28 -0.06 16 3 C -0.23 -0.59 5.38 -20.12 -0.11 -0.70 16 4 C -0.05 -0.09 3.00 71.24 0.21 0.12 16 5 O -0.55 -3.38 10.66 -148.98 -1.59 -4.96 16 6 Si 0.76 -1.49 26.77 68.60 1.84 0.34 16 7 C -0.07 -0.57 6.15 -19.56 -0.12 -0.69 16 8 C -0.08 -0.85 8.72 71.24 0.62 -0.23 16 9 C -0.08 -0.39 7.06 40.35 0.28 -0.11 16 10 C 0.59 4.37 7.79 86.45 0.67 5.04 16 11 O -0.57 -9.29 14.80 -4.35 -0.06 -9.36 16 12 N -0.72 0.47 5.28 -467.08 -2.47 -1.99 16 13 C 0.13 -0.02 5.06 86.38 0.44 0.42 16 14 C -0.09 0.44 2.22 -10.80 -0.02 0.41 16 15 H 0.09 -0.69 8.14 -2.39 -0.02 -0.71 16 16 C -0.11 0.47 5.08 30.59 0.16 0.63 16 17 C -0.10 0.33 5.10 30.60 0.16 0.49 16 18 C -0.09 0.21 2.43 -10.79 -0.03 0.19 16 19 H 0.06 0.08 8.14 -2.39 -0.02 0.06 16 20 C 0.08 -0.22 6.43 71.98 0.46 0.24 16 21 O -0.60 -0.12 13.20 -148.98 -1.97 -2.08 16 22 C -0.11 0.54 5.21 30.61 0.16 0.70 16 23 C -0.11 0.48 5.21 30.61 0.16 0.64 16 24 N -0.52 2.16 5.99 -171.93 -1.03 1.13 16 25 H 0.10 -1.45 7.13 -2.39 -0.02 -1.47 16 26 H 0.12 -2.13 8.14 -2.39 -0.02 -2.15 16 27 H 0.12 -1.82 5.17 -2.38 -0.01 -1.83 16 28 H 0.11 0.07 7.96 -2.39 -0.02 0.05 16 29 H 0.38 0.79 8.70 -74.05 -0.64 0.14 16 30 H -0.30 -1.93 7.11 99.48 0.71 -1.22 16 31 H -0.29 -0.94 7.11 99.48 0.71 -0.23 16 32 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.07 0.72 7.11 -2.39 -0.02 0.71 16 34 H 0.05 0.79 6.49 -2.39 -0.02 0.78 16 35 H 0.41 -3.08 6.78 -92.71 -0.63 -3.70 16 36 H 0.06 0.13 8.14 -2.39 -0.02 0.11 16 37 H 0.06 0.19 8.14 -2.39 -0.02 0.17 16 38 H 0.07 -0.46 7.18 -2.39 -0.02 -0.48 16 39 H 0.05 -0.04 8.14 -2.39 -0.02 -0.06 16 40 H 0.07 -0.38 8.14 -2.39 -0.02 -0.40 16 41 H 0.05 0.02 7.82 -2.39 -0.02 0.00 16 42 H 0.05 -0.20 8.14 -2.39 -0.02 -0.22 16 43 H 0.06 -0.30 8.14 -2.39 -0.02 -0.32 16 44 H 0.40 -3.13 9.12 -74.06 -0.68 -3.81 16 45 H 0.07 -0.36 8.14 -2.39 -0.02 -0.38 16 46 H 0.08 -0.51 8.14 -2.39 -0.02 -0.53 16 47 H 0.07 -0.36 8.14 -2.39 -0.02 -0.38 16 48 H 0.06 -0.14 8.14 -2.39 -0.02 -0.15 16 49 H 0.43 -5.16 8.19 -92.71 -0.76 -5.92 16 Total: 0.00 -26.08 376.43 -3.05 -29.13 By element: Atomic # 1 Polarization: -19.64 SS G_CDS: -1.68 Total: -21.32 kcal Atomic # 6 Polarization: 5.20 SS G_CDS: 3.91 Total: 9.11 kcal Atomic # 7 Polarization: 2.64 SS G_CDS: -3.50 Total: -0.86 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: -3.62 Total: -16.41 kcal Atomic # 14 Polarization: -1.49 SS G_CDS: 1.84 Total: 0.34 kcal Total: -26.08 -3.05 -29.13 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14939082_12297754.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.441 kcal (2) G-P(sol) polarization free energy of solvation -26.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds