Wall clock time and date at job start Sun Mar 7 2021 02:00:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86304 * 109.47220 * 2 1 4 4 C 1.50703 * 109.46949 * 119.99621 * 2 1 3 5 5 C 1.37814 * 119.94051 * 15.32190 * 4 2 1 6 6 C 1.39662 * 119.88068 * 180.29735 * 5 4 2 7 7 C 1.47724 * 120.12212 * 179.68181 * 6 5 4 8 8 O 1.21573 * 120.00036 * 359.72248 * 7 6 5 9 9 N 1.34777 * 120.00688 * 179.72594 * 7 6 5 10 10 C 1.46496 * 120.00206 * 179.97438 * 9 7 6 11 11 C 1.53006 * 109.47070 * 180.02562 * 10 9 7 12 12 H 1.09000 * 109.47050 * 54.99865 * 11 10 9 13 13 C 1.52997 * 109.47164 * 174.99869 * 11 10 9 14 14 C 1.53006 * 109.46974 * 179.97438 * 13 11 10 15 15 C 1.52999 * 109.47000 * 300.00410 * 14 13 11 16 16 H 1.09000 * 109.47160 * 299.99635 * 15 14 13 17 17 C 1.53006 * 109.46626 * 180.02562 * 15 14 13 18 18 O 1.42902 * 109.46978 * 174.99815 * 17 15 14 19 19 C 1.52997 * 109.47592 * 59.99968 * 15 14 13 20 20 C 1.52996 * 109.46975 * 300.00042 * 19 15 14 21 21 C 1.39635 * 119.76513 * 359.40550 * 6 5 4 22 22 C 1.37856 * 119.87783 * 0.27599 * 21 6 5 23 23 C 1.38637 * 120.11617 * 0.02562 * 22 21 6 24 24 F 1.35104 * 119.87987 * 179.97438 * 23 22 21 25 25 H 0.96693 * 114.00081 * 300.00823 * 1 2 3 26 26 H 1.08991 * 109.47746 * 239.99648 * 2 1 3 27 27 H 1.48498 * 109.99748 * 299.99597 * 3 2 1 28 28 H 1.48500 * 110.00192 * 61.31302 * 3 2 1 29 29 H 1.08002 * 120.06295 * 0.02562 * 5 4 2 30 30 H 0.97001 * 119.99390 * 359.97438 * 9 7 6 31 31 H 1.08992 * 109.47401 * 60.00133 * 10 9 7 32 32 H 1.09004 * 109.47055 * 299.99441 * 10 9 7 33 33 H 1.09000 * 109.47140 * 60.00051 * 13 11 10 34 34 H 1.09001 * 109.46922 * 299.99751 * 13 11 10 35 35 H 1.08993 * 109.46765 * 179.97438 * 14 13 11 36 36 H 1.09000 * 109.46866 * 60.00225 * 14 13 11 37 37 H 1.08995 * 109.46794 * 294.99833 * 17 15 14 38 38 H 1.09000 * 109.47314 * 54.99967 * 17 15 14 39 39 H 0.96695 * 113.99974 * 180.02562 * 18 17 15 40 40 H 1.09000 * 109.47140 * 59.99654 * 19 15 14 41 41 H 1.09001 * 109.47375 * 179.97438 * 19 15 14 42 42 H 1.09004 * 109.47368 * 299.99783 * 20 19 15 43 43 H 1.08996 * 109.47261 * 180.02562 * 20 19 15 44 44 H 1.07995 * 120.06335 * 180.29824 * 21 6 5 45 45 H 1.08001 * 119.94228 * 179.97438 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7103 1.2305 5 6 1.0746 -1.4998 1.9669 6 6 1.5399 -2.1525 3.1106 7 6 0.6245 -2.9944 3.9078 8 8 -0.5375 -3.1160 3.5715 9 7 1.0773 -3.6277 5.0079 10 6 0.1693 -4.4621 5.7987 11 6 0.9289 -5.0604 6.9845 12 1 1.3947 -4.2597 7.5590 13 6 -0.0455 -5.8295 7.8788 14 6 0.7143 -6.4283 9.0643 15 6 1.7943 -7.3815 8.5487 16 1 1.3283 -8.1819 7.9741 17 6 2.5536 -7.9807 9.7342 18 8 3.4829 -8.9573 9.2601 19 6 2.7688 -6.6124 7.6544 20 6 2.0090 -6.0136 6.4691 21 6 2.8749 -2.0113 3.4946 22 6 3.7250 -1.2244 2.7472 23 6 3.2563 -0.5737 1.6163 24 9 4.0934 0.1967 0.8875 25 1 -0.3933 0.4418 0.7649 26 1 1.7924 -0.5138 -0.8898 27 1 1.5616 2.4678 -1.2085 28 1 1.5878 2.4587 1.2241 29 1 0.0442 -1.6100 1.6626 30 1 2.0045 -3.5310 5.2761 31 1 -0.2220 -5.2656 5.1748 32 1 -0.6563 -3.8528 6.1668 33 1 -0.5113 -6.6302 7.3044 34 1 -0.8152 -5.1504 8.2457 35 1 0.0200 -6.9757 9.7016 36 1 1.1803 -5.6278 9.6388 37 1 3.0921 -7.1906 10.2575 38 1 1.8472 -8.4528 10.4170 39 1 4.0003 -9.3799 9.9592 40 1 3.2348 -5.8119 8.2290 41 1 3.5385 -7.2914 7.2875 42 1 1.5429 -6.8141 5.8944 43 1 2.7033 -5.4661 5.8317 44 1 3.2410 -2.5177 4.3754 45 1 4.7577 -1.1141 3.0435 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14939082_12496548.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:00:24 Heat of formation + Delta-G solvation = -154.261597 kcal Electronic energy + Delta-G solvation = -27221.232200 eV Core-core repulsion = 23118.676698 eV Total energy + Delta-G solvation = -4102.555502 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 324.157 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -50.37222 -41.45936 -40.37207 -39.54591 -37.81775 -37.65372 -35.86617 -33.38385 -32.53081 -31.89859 -31.82974 -28.37193 -27.09282 -25.45449 -24.27298 -23.67751 -23.31443 -21.80187 -21.45355 -20.83716 -19.41455 -18.64952 -18.28553 -18.07824 -17.80447 -17.10785 -16.80066 -16.64186 -16.24168 -16.07954 -15.95696 -15.77699 -15.28998 -15.24821 -15.18667 -14.90254 -14.65333 -14.40329 -14.19014 -14.07495 -13.86328 -13.58618 -13.34747 -13.24347 -12.93100 -12.81009 -12.61681 -12.41200 -12.19365 -12.02520 -11.90226 -11.54115 -11.31628 -11.19110 -11.13125 -10.94186 -10.88933 -10.23152 -10.07978 -9.79329 -4.77945 -0.54410 -0.06702 1.20012 1.59243 1.65524 1.94791 2.02994 2.56813 2.87196 3.12000 3.13269 3.27865 3.48073 3.50762 3.56887 3.61016 3.65176 3.82963 3.96190 4.02969 4.07129 4.17394 4.30910 4.34470 4.36984 4.38161 4.43733 4.46390 4.53501 4.57933 4.65777 4.69760 4.73669 4.77818 4.81497 4.95187 4.96088 5.00973 5.02344 5.07568 5.11310 5.16579 5.30299 5.34241 5.42807 5.52133 6.29741 6.36469 6.62483 7.11611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.527 6.527 2 C -0.074 4.074 3 Si 0.677 3.323 4 C -0.154 4.154 5 C -0.024 4.024 6 C -0.140 4.140 7 C 0.559 3.441 8 O -0.530 6.530 9 N -0.724 5.724 10 C 0.122 3.878 11 C -0.100 4.100 12 H 0.078 0.922 13 C -0.110 4.110 14 C -0.112 4.112 15 C -0.089 4.089 16 H 0.078 0.922 17 C 0.078 3.922 18 O -0.574 6.574 19 C -0.110 4.110 20 C -0.116 4.116 21 C -0.061 4.061 22 C -0.149 4.149 23 C 0.122 3.878 24 F -0.104 7.104 25 H 0.378 0.622 26 H 0.128 0.872 27 H -0.249 1.249 28 H -0.256 1.256 29 H 0.154 0.846 30 H 0.400 0.600 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.045 0.955 38 H 0.045 0.955 39 H 0.380 0.620 40 H 0.060 0.940 41 H 0.071 0.929 42 H 0.067 0.933 43 H 0.061 0.939 44 H 0.138 0.862 45 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.986 -0.644 5.438 7.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.333 6.333 2 C -0.183 4.183 3 Si 0.576 3.424 4 C -0.156 4.156 5 C -0.043 4.043 6 C -0.144 4.144 7 C 0.346 3.654 8 O -0.407 6.407 9 N -0.377 5.377 10 C -0.001 4.001 11 C -0.119 4.119 12 H 0.097 0.903 13 C -0.148 4.148 14 C -0.150 4.150 15 C -0.107 4.107 16 H 0.096 0.904 17 C 0.000 4.000 18 O -0.379 6.379 19 C -0.147 4.147 20 C -0.154 4.154 21 C -0.080 4.080 22 C -0.168 4.168 23 C 0.103 3.897 24 F -0.083 7.083 25 H 0.226 0.774 26 H 0.145 0.855 27 H -0.173 1.173 28 H -0.180 1.180 29 H 0.171 0.829 30 H 0.236 0.764 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.227 0.773 40 H 0.079 0.921 41 H 0.090 0.910 42 H 0.085 0.915 43 H 0.080 0.920 44 H 0.155 0.845 45 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 3.770 -0.012 4.059 5.539 hybrid contribution -0.156 -0.286 1.214 1.257 sum 3.614 -0.298 5.273 6.399 Atomic orbital electron populations 1.86609 1.17038 1.80108 1.49525 1.24946 0.84571 1.11207 0.97562 0.94762 0.92728 0.73534 0.81421 1.20390 0.92957 1.02013 1.00197 1.20978 1.00962 0.91154 0.91201 1.19992 0.94293 1.02051 0.98033 1.18121 0.87349 0.79481 0.80449 1.90827 1.17711 1.62707 1.69472 1.45909 1.14505 1.49867 1.27411 1.21488 0.92399 0.94175 0.92010 1.21451 0.96640 0.98220 0.95557 0.90325 1.21469 0.97380 0.99777 0.96190 1.21501 0.97201 0.98646 0.97655 1.21174 0.95679 0.97785 0.96086 0.90350 1.22245 0.91271 0.90633 0.95822 1.86472 1.55832 1.57269 1.38354 1.21513 0.97779 0.99331 0.96126 1.21636 0.97187 0.98765 0.97778 1.21175 0.91873 0.96228 0.98717 1.21087 1.01842 0.99076 0.94747 1.17646 0.87249 0.93273 0.91567 1.91196 1.69777 1.71295 1.76007 0.77390 0.85465 1.17329 1.18014 0.82864 0.76441 0.90984 0.91043 0.91277 0.91203 0.91428 0.91616 0.93687 0.93662 0.77283 0.92128 0.91007 0.91451 0.92010 0.84476 0.83276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -0.85 11.64 -35.23 -0.41 -1.26 16 2 C -0.07 -0.03 2.96 36.01 0.11 0.08 16 3 Si 0.68 0.18 29.57 -169.99 -5.03 -4.85 16 4 C -0.15 -0.05 5.13 -104.61 -0.54 -0.59 16 5 C -0.02 -0.03 8.78 -39.20 -0.34 -0.37 16 6 C -0.14 -0.06 5.87 -104.97 -0.62 -0.68 16 7 C 0.56 1.11 7.77 -12.38 -0.10 1.01 16 8 O -0.53 -3.18 16.34 5.30 0.09 -3.10 16 9 N -0.72 0.74 5.23 -61.29 -0.32 0.42 16 10 C 0.12 -0.11 5.06 -4.04 -0.02 -0.13 16 11 C -0.10 0.26 2.23 -90.62 -0.20 0.06 16 12 H 0.08 -0.24 8.14 -51.93 -0.42 -0.66 16 13 C -0.11 0.26 5.20 -26.73 -0.14 0.12 16 14 C -0.11 0.26 5.20 -26.73 -0.14 0.13 16 15 C -0.09 0.11 2.43 -90.62 -0.22 -0.11 16 16 H 0.08 0.00 8.14 -51.93 -0.42 -0.42 16 17 C 0.08 -0.10 6.43 37.16 0.24 0.14 16 18 O -0.57 -0.05 13.20 -35.23 -0.46 -0.51 16 19 C -0.11 0.16 5.10 -26.73 -0.14 0.02 16 20 C -0.12 0.25 5.07 -26.73 -0.14 0.12 16 21 C -0.06 0.13 9.54 -39.20 -0.37 -0.24 16 22 C -0.15 0.32 10.01 -39.57 -0.40 -0.07 16 23 C 0.12 -0.08 6.67 -39.27 -0.26 -0.35 16 24 F -0.10 0.12 13.70 2.25 0.03 0.15 16 25 H 0.38 -0.44 8.44 45.56 0.38 -0.06 16 26 H 0.13 -0.04 7.96 -51.93 -0.41 -0.46 16 27 H -0.25 -0.76 7.11 56.52 0.40 -0.36 16 28 H -0.26 -0.61 7.11 56.52 0.40 -0.21 16 29 H 0.15 0.32 6.67 -52.49 -0.35 -0.03 16 30 H 0.40 -1.47 5.68 -40.82 -0.23 -1.70 16 31 H 0.07 0.02 8.14 -51.93 -0.42 -0.40 16 32 H 0.07 0.00 8.14 -51.93 -0.42 -0.43 16 33 H 0.07 -0.13 8.14 -51.93 -0.42 -0.55 16 34 H 0.07 -0.18 8.14 -51.93 -0.42 -0.60 16 35 H 0.07 -0.17 8.14 -51.93 -0.42 -0.59 16 36 H 0.07 -0.17 8.14 -51.93 -0.42 -0.59 16 37 H 0.04 -0.09 8.14 -51.93 -0.42 -0.51 16 38 H 0.05 -0.08 8.14 -51.93 -0.42 -0.51 16 39 H 0.38 -1.48 9.12 45.56 0.42 -1.06 16 40 H 0.06 -0.11 8.14 -51.93 -0.42 -0.53 16 41 H 0.07 0.00 7.82 -51.93 -0.41 -0.40 16 42 H 0.07 -0.08 8.14 -51.93 -0.42 -0.50 16 43 H 0.06 -0.18 7.18 -51.93 -0.37 -0.55 16 44 H 0.14 -0.71 6.40 -52.49 -0.34 -1.05 16 45 H 0.15 -0.66 8.06 -52.49 -0.42 -1.09 16 LS Contribution 362.40 15.07 5.46 5.46 Total: 0.00 -7.90 362.40 -9.92 -17.82 By element: Atomic # 1 Polarization: -7.26 SS G_CDS: -6.00 Total: -13.26 kcal Atomic # 6 Polarization: 2.41 SS G_CDS: -3.27 Total: -0.86 kcal Atomic # 7 Polarization: 0.74 SS G_CDS: -0.32 Total: 0.42 kcal Atomic # 8 Polarization: -4.09 SS G_CDS: -0.79 Total: -4.88 kcal Atomic # 9 Polarization: 0.12 SS G_CDS: 0.03 Total: 0.15 kcal Atomic # 14 Polarization: 0.18 SS G_CDS: -5.03 Total: -4.85 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -7.90 -9.92 -17.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14939082_12496548.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.446 kcal (2) G-P(sol) polarization free energy of solvation -7.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds