Wall clock time and date at job start Sun Mar 7 2021 02:00:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86304 * 109.47220 * 2 1 4 4 C 1.50703 * 109.46949 * 119.99621 * 2 1 3 5 5 C 1.37814 * 119.94051 * 15.32190 * 4 2 1 6 6 C 1.39662 * 119.88068 * 180.29735 * 5 4 2 7 7 C 1.47724 * 120.12212 * 179.68181 * 6 5 4 8 8 O 1.21573 * 120.00036 * 359.72248 * 7 6 5 9 9 N 1.34777 * 120.00688 * 179.72594 * 7 6 5 10 10 C 1.46496 * 120.00206 * 179.97438 * 9 7 6 11 11 C 1.53006 * 109.47070 * 180.02562 * 10 9 7 12 12 H 1.09000 * 109.47050 * 54.99865 * 11 10 9 13 13 C 1.52997 * 109.47164 * 174.99869 * 11 10 9 14 14 C 1.53006 * 109.46974 * 179.97438 * 13 11 10 15 15 C 1.52999 * 109.47000 * 300.00410 * 14 13 11 16 16 H 1.09000 * 109.47160 * 299.99635 * 15 14 13 17 17 C 1.53006 * 109.46626 * 180.02562 * 15 14 13 18 18 O 1.42902 * 109.46978 * 174.99815 * 17 15 14 19 19 C 1.52997 * 109.47592 * 59.99968 * 15 14 13 20 20 C 1.52996 * 109.46975 * 300.00042 * 19 15 14 21 21 C 1.39635 * 119.76513 * 359.40550 * 6 5 4 22 22 C 1.37856 * 119.87783 * 0.27599 * 21 6 5 23 23 C 1.38637 * 120.11617 * 0.02562 * 22 21 6 24 24 F 1.35104 * 119.87987 * 179.97438 * 23 22 21 25 25 H 0.96693 * 114.00081 * 300.00823 * 1 2 3 26 26 H 1.08991 * 109.47746 * 239.99648 * 2 1 3 27 27 H 1.48498 * 109.99748 * 299.99597 * 3 2 1 28 28 H 1.48500 * 110.00192 * 61.31302 * 3 2 1 29 29 H 1.08002 * 120.06295 * 0.02562 * 5 4 2 30 30 H 0.97001 * 119.99390 * 359.97438 * 9 7 6 31 31 H 1.08992 * 109.47401 * 60.00133 * 10 9 7 32 32 H 1.09004 * 109.47055 * 299.99441 * 10 9 7 33 33 H 1.09000 * 109.47140 * 60.00051 * 13 11 10 34 34 H 1.09001 * 109.46922 * 299.99751 * 13 11 10 35 35 H 1.08993 * 109.46765 * 179.97438 * 14 13 11 36 36 H 1.09000 * 109.46866 * 60.00225 * 14 13 11 37 37 H 1.08995 * 109.46794 * 294.99833 * 17 15 14 38 38 H 1.09000 * 109.47314 * 54.99967 * 17 15 14 39 39 H 0.96695 * 113.99974 * 180.02562 * 18 17 15 40 40 H 1.09000 * 109.47140 * 59.99654 * 19 15 14 41 41 H 1.09001 * 109.47375 * 179.97438 * 19 15 14 42 42 H 1.09004 * 109.47368 * 299.99783 * 20 19 15 43 43 H 1.08996 * 109.47261 * 180.02562 * 20 19 15 44 44 H 1.07995 * 120.06335 * 180.29824 * 21 6 5 45 45 H 1.08001 * 119.94228 * 179.97438 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7103 1.2305 5 6 1.0746 -1.4998 1.9669 6 6 1.5399 -2.1525 3.1106 7 6 0.6245 -2.9944 3.9078 8 8 -0.5375 -3.1160 3.5715 9 7 1.0773 -3.6277 5.0079 10 6 0.1693 -4.4621 5.7987 11 6 0.9289 -5.0604 6.9845 12 1 1.3947 -4.2597 7.5590 13 6 -0.0455 -5.8295 7.8788 14 6 0.7143 -6.4283 9.0643 15 6 1.7943 -7.3815 8.5487 16 1 1.3283 -8.1819 7.9741 17 6 2.5536 -7.9807 9.7342 18 8 3.4829 -8.9573 9.2601 19 6 2.7688 -6.6124 7.6544 20 6 2.0090 -6.0136 6.4691 21 6 2.8749 -2.0113 3.4946 22 6 3.7250 -1.2244 2.7472 23 6 3.2563 -0.5737 1.6163 24 9 4.0934 0.1967 0.8875 25 1 -0.3933 0.4418 0.7649 26 1 1.7924 -0.5138 -0.8898 27 1 1.5616 2.4678 -1.2085 28 1 1.5878 2.4587 1.2241 29 1 0.0442 -1.6100 1.6626 30 1 2.0045 -3.5310 5.2761 31 1 -0.2220 -5.2656 5.1748 32 1 -0.6563 -3.8528 6.1668 33 1 -0.5113 -6.6302 7.3044 34 1 -0.8152 -5.1504 8.2457 35 1 0.0200 -6.9757 9.7016 36 1 1.1803 -5.6278 9.6388 37 1 3.0921 -7.1906 10.2575 38 1 1.8472 -8.4528 10.4170 39 1 4.0003 -9.3799 9.9592 40 1 3.2348 -5.8119 8.2290 41 1 3.5385 -7.2914 7.2875 42 1 1.5429 -6.8141 5.8944 43 1 2.7033 -5.4661 5.8317 44 1 3.2410 -2.5177 4.3754 45 1 4.7577 -1.1141 3.0435 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14939082_12496548.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:00:23 Heat of formation + Delta-G solvation = -154.342235 kcal Electronic energy + Delta-G solvation = -27221.235696 eV Core-core repulsion = 23118.676698 eV Total energy + Delta-G solvation = -4102.558999 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 324.157 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -50.27891 -41.49213 -40.26673 -39.57611 -37.84663 -37.61006 -35.90405 -33.35082 -32.47332 -31.81914 -31.68705 -28.31803 -27.07003 -25.39171 -24.20405 -23.54300 -23.25228 -21.71172 -21.45866 -20.71127 -19.39322 -18.59638 -18.19658 -18.08704 -17.81311 -17.06350 -16.78849 -16.63621 -16.23521 -16.07466 -15.89255 -15.73808 -15.21897 -15.15316 -15.12663 -14.80789 -14.58141 -14.33701 -14.23995 -13.99383 -13.92559 -13.49685 -13.33981 -13.08759 -12.86983 -12.81226 -12.52499 -12.46566 -12.03364 -11.97802 -11.90016 -11.40095 -11.34689 -11.11108 -11.06356 -10.98297 -10.76966 -10.28953 -10.03545 -9.74536 -4.85067 -0.50652 0.01135 1.15929 1.49887 1.60068 1.85624 2.01931 2.57740 2.94778 3.15050 3.31278 3.31782 3.59187 3.62104 3.67397 3.74383 3.77267 3.97757 4.09917 4.11261 4.18522 4.31228 4.40776 4.45679 4.49713 4.51386 4.56912 4.59920 4.67749 4.70388 4.77341 4.79405 4.81027 4.88823 4.96388 5.00973 5.08805 5.10145 5.16484 5.21803 5.25064 5.29274 5.36369 5.47139 5.57058 5.61646 6.31815 6.40301 6.89324 7.07496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.545 6.545 2 C -0.081 4.081 3 Si 0.747 3.253 4 C -0.163 4.163 5 C -0.040 4.040 6 C -0.154 4.154 7 C 0.555 3.445 8 O -0.582 6.582 9 N -0.707 5.707 10 C 0.124 3.876 11 C -0.087 4.087 12 H 0.094 0.906 13 C -0.112 4.112 14 C -0.107 4.107 15 C -0.091 4.091 16 H 0.059 0.941 17 C 0.075 3.925 18 O -0.596 6.596 19 C -0.105 4.105 20 C -0.114 4.114 21 C -0.047 4.047 22 C -0.141 4.141 23 C 0.119 3.881 24 F -0.100 7.100 25 H 0.387 0.613 26 H 0.133 0.867 27 H -0.290 1.290 28 H -0.284 1.284 29 H 0.133 0.867 30 H 0.415 0.585 31 H 0.056 0.944 32 H 0.063 0.937 33 H 0.059 0.941 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.075 0.925 37 H 0.056 0.944 38 H 0.049 0.951 39 H 0.395 0.605 40 H 0.071 0.929 41 H 0.055 0.945 42 H 0.052 0.948 43 H 0.074 0.926 44 H 0.173 0.827 45 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.163 -0.429 6.890 9.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.353 6.353 2 C -0.189 4.189 3 Si 0.650 3.350 4 C -0.164 4.164 5 C -0.059 4.059 6 C -0.157 4.157 7 C 0.344 3.656 8 O -0.463 6.463 9 N -0.360 5.360 10 C 0.001 3.999 11 C -0.106 4.106 12 H 0.113 0.887 13 C -0.150 4.150 14 C -0.145 4.145 15 C -0.109 4.109 16 H 0.078 0.922 17 C -0.002 4.002 18 O -0.405 6.405 19 C -0.143 4.143 20 C -0.151 4.151 21 C -0.066 4.066 22 C -0.159 4.159 23 C 0.099 3.901 24 F -0.078 7.078 25 H 0.236 0.764 26 H 0.151 0.849 27 H -0.218 1.218 28 H -0.210 1.210 29 H 0.151 0.849 30 H 0.254 0.746 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.092 0.908 35 H 0.087 0.913 36 H 0.094 0.906 37 H 0.074 0.926 38 H 0.068 0.932 39 H 0.244 0.756 40 H 0.090 0.910 41 H 0.074 0.926 42 H 0.071 0.929 43 H 0.093 0.907 44 H 0.190 0.810 45 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 5.998 0.177 5.550 8.173 hybrid contribution -0.840 -0.366 0.777 1.201 sum 5.158 -0.189 6.327 8.165 Atomic orbital electron populations 1.86570 1.17984 1.80467 1.50312 1.25090 0.83957 1.11619 0.98235 0.94104 0.91521 0.71807 0.77525 1.20312 0.93622 1.02383 1.00106 1.20872 1.00424 0.92375 0.92244 1.19959 0.95381 1.02419 0.97922 1.18440 0.86902 0.79416 0.80867 1.90799 1.19908 1.64650 1.70907 1.45789 1.15236 1.48649 1.26291 1.21456 0.92613 0.93568 0.92302 1.21353 0.96182 0.98319 0.94702 0.88742 1.21483 0.97601 0.99648 0.96252 1.21459 0.96843 0.98617 0.97533 1.21188 0.96026 0.97586 0.96144 0.92246 1.22322 0.91318 0.90785 0.95793 1.86433 1.56379 1.57802 1.39863 1.21457 0.97318 0.99223 0.96292 1.21612 0.97345 0.98526 0.97629 1.21520 0.90300 0.95392 0.99347 1.21462 1.03212 0.97691 0.93529 1.17797 0.86775 0.93373 0.92108 1.91200 1.69432 1.71154 1.76036 0.76364 0.84912 1.21753 1.21036 0.84873 0.74580 0.92583 0.91893 0.92217 0.90773 0.91321 0.90599 0.92576 0.93247 0.75581 0.91010 0.92632 0.92906 0.90705 0.80968 0.80122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -2.80 11.64 -148.98 -1.73 -4.54 16 2 C -0.08 -0.15 2.96 71.24 0.21 0.07 16 3 Si 0.75 1.00 29.57 68.60 2.03 3.02 16 4 C -0.16 -0.18 5.13 -19.86 -0.10 -0.28 16 5 C -0.04 -0.15 8.78 22.51 0.20 0.05 16 6 C -0.15 -0.14 5.87 -20.09 -0.12 -0.25 16 7 C 0.56 2.62 7.77 86.75 0.67 3.30 16 8 O -0.58 -8.36 16.34 -3.95 -0.06 -8.43 16 9 N -0.71 1.79 5.23 -466.08 -2.44 -0.65 16 10 C 0.12 -0.18 5.06 86.38 0.44 0.25 16 11 C -0.09 0.52 2.23 -10.79 -0.02 0.50 16 12 H 0.09 -0.80 8.14 -2.39 -0.02 -0.82 16 13 C -0.11 0.55 5.20 30.60 0.16 0.70 16 14 C -0.11 0.58 5.20 30.60 0.16 0.73 16 15 C -0.09 0.24 2.43 -10.79 -0.03 0.21 16 16 H 0.06 0.07 8.14 -2.39 -0.02 0.05 16 17 C 0.08 -0.22 6.43 71.98 0.46 0.24 16 18 O -0.60 -0.09 13.20 -148.98 -1.97 -2.05 16 19 C -0.11 0.38 5.10 30.59 0.16 0.53 16 20 C -0.11 0.57 5.07 30.59 0.16 0.72 16 21 C -0.05 0.32 9.54 22.52 0.21 0.53 16 22 C -0.14 0.99 10.01 22.27 0.22 1.21 16 23 C 0.12 -0.30 6.67 22.47 0.15 -0.15 16 24 F -0.10 0.37 13.70 44.97 0.62 0.98 16 25 H 0.39 -0.03 8.44 -74.06 -0.63 -0.65 16 26 H 0.13 0.01 7.96 -2.39 -0.02 -0.01 16 27 H -0.29 -2.31 7.11 99.48 0.71 -1.60 16 28 H -0.28 -1.66 7.11 99.48 0.71 -0.95 16 29 H 0.13 0.97 6.67 -2.91 -0.02 0.95 16 30 H 0.42 -3.93 5.68 -92.71 -0.53 -4.46 16 31 H 0.06 0.12 8.14 -2.39 -0.02 0.10 16 32 H 0.06 0.05 8.14 -2.39 -0.02 0.03 16 33 H 0.06 -0.17 8.14 -2.39 -0.02 -0.19 16 34 H 0.07 -0.40 8.14 -2.39 -0.02 -0.42 16 35 H 0.07 -0.37 8.14 -2.39 -0.02 -0.38 16 36 H 0.08 -0.53 8.14 -2.39 -0.02 -0.55 16 37 H 0.06 -0.30 8.14 -2.39 -0.02 -0.32 16 38 H 0.05 -0.20 8.14 -2.39 -0.02 -0.22 16 39 H 0.39 -3.13 9.12 -74.06 -0.68 -3.80 16 40 H 0.07 -0.40 8.14 -2.39 -0.02 -0.42 16 41 H 0.05 0.01 7.82 -2.39 -0.02 -0.01 16 42 H 0.05 -0.09 8.14 -2.39 -0.02 -0.11 16 43 H 0.07 -0.57 7.18 -2.39 -0.02 -0.59 16 44 H 0.17 -2.47 6.40 -2.91 -0.02 -2.49 16 45 H 0.18 -2.38 8.06 -2.91 -0.02 -2.40 16 Total: 0.00 -21.17 362.40 -1.39 -22.56 By element: Atomic # 1 Polarization: -18.50 SS G_CDS: -0.76 Total: -19.26 kcal Atomic # 6 Polarization: 5.43 SS G_CDS: 2.93 Total: 8.36 kcal Atomic # 7 Polarization: 1.79 SS G_CDS: -2.44 Total: -0.65 kcal Atomic # 8 Polarization: -11.25 SS G_CDS: -3.76 Total: -15.02 kcal Atomic # 9 Polarization: 0.37 SS G_CDS: 0.62 Total: 0.98 kcal Atomic # 14 Polarization: 1.00 SS G_CDS: 2.03 Total: 3.02 kcal Total: -21.17 -1.39 -22.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14939082_12496548.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.781 kcal (2) G-P(sol) polarization free energy of solvation -21.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds