Wall clock time and date at job start Sun Mar 7 2021 02:00:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42895 * 1 3 3 Si 1.86304 * 109.46737 * 2 1 4 4 C 1.50702 * 109.47468 * 120.00045 * 2 1 3 5 5 C 1.34832 * 125.65062 * 65.30036 * 4 2 1 6 6 C 1.40795 * 107.04954 * 180.09766 * 5 4 2 7 7 C 1.36109 * 106.73337 * 359.62775 * 6 5 4 8 8 C 1.47569 * 125.94731 * 180.25127 * 7 6 5 9 9 C 1.39922 * 119.95349 * 359.97438 * 8 7 6 10 10 C 1.36425 * 120.27863 * 180.02562 * 9 8 7 11 11 C 1.39873 * 120.18559 * 0.02562 * 10 9 8 12 12 C 1.47291 * 120.04784 * 179.97438 * 11 10 9 13 13 O 1.21627 * 120.00426 * 179.97438 * 12 11 10 14 14 N 1.34780 * 119.99859 * 359.97438 * 12 11 10 15 15 C 1.46497 * 120.00004 * 180.02562 * 14 12 11 16 16 C 1.53002 * 109.47185 * 180.02562 * 15 14 12 17 17 H 1.08995 * 109.46671 * 305.00100 * 16 15 14 18 18 C 1.52998 * 109.47157 * 65.00159 * 16 15 14 19 19 C 1.52992 * 109.47152 * 179.97438 * 18 16 15 20 20 C 1.52999 * 109.47432 * 300.00080 * 19 18 16 21 21 H 1.09006 * 109.46676 * 299.99773 * 20 19 18 22 22 C 1.53002 * 109.47417 * 179.97438 * 20 19 18 23 23 O 1.42905 * 109.47000 * 64.99789 * 22 20 19 24 24 C 1.52998 * 109.47017 * 59.99837 * 20 19 18 25 25 C 1.53002 * 109.46980 * 299.99790 * 24 20 19 26 26 C 1.40406 * 119.90955 * 359.97092 * 11 10 9 27 27 O 1.35679 * 120.14159 * 180.02562 * 26 11 10 28 28 C 1.38286 * 119.72467 * 359.75316 * 26 11 10 29 29 O 1.34226 * 125.65119 * 244.97145 * 4 2 1 30 30 H 0.96694 * 114.00584 * 60.00271 * 1 2 3 31 31 H 1.08999 * 109.47120 * 240.00577 * 2 1 3 32 32 H 1.48499 * 110.00025 * 60.00502 * 3 2 1 33 33 H 1.48503 * 109.99869 * 181.32293 * 3 2 1 34 34 H 1.08005 * 126.47500 * 359.96907 * 5 4 2 35 35 H 1.08002 * 126.63743 * 179.89704 * 6 5 4 36 36 H 1.07995 * 119.86089 * 0.02562 * 9 8 7 37 37 H 1.07994 * 119.90780 * 179.97438 * 10 9 8 38 38 H 0.96996 * 120.00055 * 0.02562 * 14 12 11 39 39 H 1.09005 * 109.47321 * 300.00049 * 15 14 12 40 40 H 1.09003 * 109.47275 * 59.99732 * 15 14 12 41 41 H 1.09001 * 109.46679 * 299.99880 * 18 16 15 42 42 H 1.08998 * 109.47119 * 59.99932 * 18 16 15 43 43 H 1.08997 * 109.47242 * 179.97438 * 19 18 16 44 44 H 1.08998 * 109.47151 * 59.99968 * 19 18 16 45 45 H 1.08993 * 109.46824 * 184.99642 * 22 20 19 46 46 H 1.08999 * 109.46687 * 305.00253 * 22 20 19 47 47 H 0.96701 * 114.00094 * 180.02562 * 23 22 20 48 48 H 1.09001 * 109.46679 * 180.02562 * 24 20 19 49 49 H 1.08998 * 109.47119 * 60.00386 * 24 20 19 50 50 H 1.08993 * 109.47802 * 300.00711 * 25 24 20 51 51 H 1.09002 * 109.47010 * 179.97438 * 25 24 20 52 52 H 0.96702 * 113.99576 * 90.00109 * 27 26 11 53 53 H 1.07991 * 120.09730 * 180.26542 * 28 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0498 1.7565 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 1.7617 -2.0192 1.5066 6 6 2.3816 -2.2631 2.7470 7 6 2.9089 -1.0787 3.1612 8 6 3.6590 -0.8546 4.4121 9 6 3.8804 -1.9181 5.2940 10 6 4.5726 -1.7183 6.4525 11 6 5.0655 -0.4477 6.7671 12 6 5.8119 -0.2353 8.0190 13 8 6.2407 0.8698 8.2915 14 7 6.0199 -1.2656 8.8626 15 6 6.7618 -1.0543 10.1081 16 6 6.8558 -2.3743 10.8760 17 1 5.8549 -2.7774 11.0294 18 6 7.6904 -3.3735 10.0723 19 6 7.7850 -4.6932 10.8404 20 6 8.4498 -4.4477 12.1964 21 1 9.4508 -4.0443 12.0425 22 6 8.5439 -5.7674 12.9648 23 8 9.4175 -6.6610 12.2717 24 6 7.6152 -3.4485 13.0000 25 6 7.5208 -2.1287 12.2319 26 6 4.8480 0.6251 5.8878 27 8 5.3245 1.8594 6.1879 28 6 4.1508 0.4171 4.7117 29 8 2.6272 -0.1464 2.2301 30 1 -0.3934 0.4416 -0.7650 31 1 1.7923 -0.5137 -0.8900 32 1 1.5614 2.4679 1.2085 33 1 3.5345 1.7704 -0.0322 34 1 1.2459 -2.7432 0.8932 35 1 2.4329 -3.2083 3.2670 36 1 3.5018 -2.9013 5.0566 37 1 4.7396 -2.5434 7.1291 38 1 5.6783 -2.1471 8.6452 39 1 7.7652 -0.6965 9.8771 40 1 6.2439 -0.3145 10.7185 41 1 7.2170 -3.5481 9.1061 42 1 8.6914 -2.9703 9.9188 43 1 8.3792 -5.4052 10.2677 44 1 6.7842 -5.0966 10.9943 45 1 8.9355 -5.5787 13.9643 46 1 7.5528 -6.2146 13.0413 47 1 9.5243 -7.5200 12.7028 48 1 8.0892 -3.2733 13.9659 49 1 6.6144 -3.8519 13.1539 50 1 8.5216 -1.7253 12.0780 51 1 6.9258 -1.4170 12.8042 52 1 6.2174 2.0275 5.8567 53 1 3.9837 1.2370 4.0290 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14939082_12807986.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:00:36 Heat of formation + Delta-G solvation = -131.327404 kcal Electronic energy + Delta-G solvation = -35043.760692 eV Core-core repulsion = 30234.073242 eV Total energy + Delta-G solvation = -4809.687450 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 388.181 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -43.88567 -41.69677 -40.38194 -39.55569 -38.14033 -37.84489 -37.58943 -35.83213 -34.42705 -33.80613 -32.60884 -31.71033 -31.44791 -30.64574 -28.31106 -26.92696 -25.03762 -24.25277 -24.10287 -23.62490 -22.52856 -21.93131 -21.67837 -21.38903 -20.75032 -19.82155 -18.84665 -18.70081 -18.20794 -18.11978 -17.47365 -17.19849 -16.80241 -16.54294 -16.36608 -16.27460 -16.01719 -15.89378 -15.77145 -15.55806 -15.13301 -14.95089 -14.77654 -14.58393 -14.51365 -14.32646 -14.21367 -14.02939 -13.97333 -13.68051 -13.63268 -13.43162 -13.10077 -12.85434 -12.82550 -12.74552 -12.51257 -12.27911 -12.05352 -12.02137 -11.91008 -11.41165 -11.26134 -11.21514 -11.07516 -10.96192 -10.81346 -10.77616 -10.46861 -10.19818 -10.07778 -9.12859 -5.15975 -0.91385 0.01522 0.50922 1.11013 1.29615 1.48402 1.57760 1.82964 1.95412 2.00404 2.53353 2.89197 3.18195 3.30226 3.46601 3.55198 3.62793 3.68841 3.70437 3.73103 3.75763 3.87807 3.88845 4.06572 4.11423 4.17170 4.25048 4.30097 4.33675 4.44318 4.48086 4.50109 4.52008 4.57838 4.58544 4.65403 4.68111 4.69283 4.75939 4.76858 4.81575 4.93839 4.95772 4.99376 5.08550 5.09229 5.15183 5.20764 5.23643 5.28416 5.33518 5.35602 5.42418 5.45852 5.55775 5.84515 6.40469 6.57353 6.80633 6.88290 7.09523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.559 6.559 2 C -0.034 4.034 3 Si 0.799 3.201 4 C -0.031 4.031 5 C -0.174 4.174 6 C -0.166 4.166 7 C -0.006 4.006 8 C 0.023 3.977 9 C -0.106 4.106 10 C -0.048 4.048 11 C -0.176 4.176 12 C 0.554 3.446 13 O -0.565 6.565 14 N -0.709 5.709 15 C 0.126 3.874 16 C -0.087 4.087 17 H 0.093 0.907 18 C -0.113 4.113 19 C -0.105 4.105 20 C -0.091 4.091 21 H 0.060 0.940 22 C 0.076 3.924 23 O -0.596 6.596 24 C -0.107 4.107 25 C -0.112 4.112 26 C 0.161 3.839 27 O -0.495 6.495 28 C -0.160 4.160 29 O -0.198 6.198 30 H 0.414 0.586 31 H 0.131 0.869 32 H -0.313 1.313 33 H -0.295 1.295 34 H 0.178 0.822 35 H 0.191 0.809 36 H 0.175 0.825 37 H 0.177 0.823 38 H 0.414 0.586 39 H 0.057 0.943 40 H 0.060 0.940 41 H 0.074 0.926 42 H 0.053 0.947 43 H 0.055 0.945 44 H 0.070 0.930 45 H 0.050 0.950 46 H 0.056 0.944 47 H 0.395 0.605 48 H 0.069 0.931 49 H 0.075 0.925 50 H 0.060 0.940 51 H 0.073 0.927 52 H 0.408 0.592 53 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.224 -8.046 -2.965 8.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.371 6.371 2 C -0.144 4.144 3 Si 0.706 3.294 4 C -0.080 4.080 5 C -0.193 4.193 6 C -0.185 4.185 7 C -0.054 4.054 8 C 0.022 3.978 9 C -0.124 4.124 10 C -0.066 4.066 11 C -0.180 4.180 12 C 0.342 3.658 13 O -0.445 6.445 14 N -0.363 5.363 15 C 0.002 3.998 16 C -0.106 4.106 17 H 0.111 0.889 18 C -0.151 4.151 19 C -0.143 4.143 20 C -0.110 4.110 21 H 0.079 0.921 22 C -0.002 4.002 23 O -0.405 6.405 24 C -0.144 4.144 25 C -0.150 4.150 26 C 0.114 3.886 27 O -0.308 6.308 28 C -0.179 4.179 29 O -0.097 6.097 30 H 0.267 0.733 31 H 0.148 0.852 32 H -0.242 1.242 33 H -0.223 1.223 34 H 0.195 0.805 35 H 0.208 0.792 36 H 0.192 0.808 37 H 0.194 0.806 38 H 0.252 0.748 39 H 0.075 0.925 40 H 0.078 0.922 41 H 0.092 0.908 42 H 0.072 0.928 43 H 0.074 0.926 44 H 0.089 0.911 45 H 0.068 0.932 46 H 0.074 0.926 47 H 0.244 0.756 48 H 0.087 0.913 49 H 0.093 0.907 50 H 0.079 0.921 51 H 0.091 0.909 52 H 0.268 0.732 53 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -1.749 -6.104 -1.913 6.631 hybrid contribution 0.520 -0.784 0.364 1.009 sum -1.228 -6.887 -1.550 7.166 Atomic orbital electron populations 1.86410 1.16031 1.82507 1.52179 1.23900 0.86524 1.11166 0.92833 0.94483 0.76975 0.74294 0.83633 1.22230 1.00454 0.93768 0.91582 1.21913 1.03475 0.95535 0.98380 1.22331 1.00325 0.98814 0.96982 1.20742 1.05284 0.88185 0.91212 1.18008 0.95347 0.94034 0.90396 1.21079 0.99162 0.99285 0.92825 1.21212 0.93629 0.95133 0.96625 1.20535 1.05352 0.95208 0.96891 1.18185 0.79477 0.84373 0.83738 1.90824 1.51993 1.25372 1.76317 1.45791 1.56902 1.12181 1.21390 1.21436 0.95916 0.98230 0.84188 1.21354 1.01027 0.93263 0.94947 0.88924 1.21606 0.99936 0.94859 0.98653 1.21453 1.00816 0.96851 0.95138 1.21192 0.99669 0.94174 0.95926 0.92140 1.22315 0.93176 0.90181 0.94503 1.86433 1.69143 1.30169 1.54712 1.21459 1.00511 0.94237 0.98230 1.21481 1.01046 0.97626 0.94803 1.18463 0.94632 0.84329 0.91132 1.84727 1.37333 1.28555 1.80215 1.21495 1.01798 0.97557 0.97050 1.83956 1.58795 1.39419 1.27483 0.73284 0.85200 1.24176 1.22270 0.80483 0.79179 0.80777 0.80613 0.74756 0.92453 0.92209 0.90783 0.92793 0.92574 0.91097 0.93203 0.92616 0.75580 0.91252 0.90670 0.92107 0.90882 0.73152 0.85819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.87 12.86 -148.98 -1.92 -1.05 16 2 C -0.03 0.03 2.97 71.24 0.21 0.25 16 3 Si 0.80 0.12 32.11 68.60 2.20 2.32 16 4 C -0.03 -0.19 6.24 24.90 0.16 -0.04 16 5 C -0.17 -0.52 10.78 22.11 0.24 -0.28 16 6 C -0.17 -0.29 10.26 22.40 0.23 -0.06 16 7 C -0.01 -0.04 7.02 24.24 0.17 0.13 16 8 C 0.02 0.11 5.87 -20.08 -0.12 -0.01 16 9 C -0.11 0.25 9.48 22.25 0.21 0.46 16 10 C -0.05 0.15 9.47 22.24 0.21 0.36 16 11 C -0.18 -0.85 5.89 -19.97 -0.12 -0.97 16 12 C 0.55 4.13 7.75 86.62 0.67 4.80 16 13 O -0.57 -9.24 15.14 16.87 0.26 -8.99 16 14 N -0.71 0.25 5.23 -466.48 -2.44 -2.20 16 15 C 0.13 0.02 5.06 86.38 0.44 0.46 16 16 C -0.09 0.40 2.23 -10.79 -0.02 0.38 16 17 H 0.09 -0.63 8.14 -2.39 -0.02 -0.64 16 18 C -0.11 0.46 5.08 30.59 0.16 0.61 16 19 C -0.11 0.29 5.10 30.59 0.16 0.45 16 20 C -0.09 0.18 2.43 -10.79 -0.03 0.15 16 21 H 0.06 0.10 8.14 -2.38 -0.02 0.08 16 22 C 0.08 -0.18 6.43 71.98 0.46 0.28 16 23 O -0.60 -0.35 13.20 -148.98 -1.97 -2.31 16 24 C -0.11 0.48 5.20 30.59 0.16 0.64 16 25 C -0.11 0.42 5.20 30.60 0.16 0.58 16 26 C 0.16 1.43 6.71 22.81 0.15 1.59 16 27 O -0.50 -5.59 11.56 -68.98 -0.80 -6.39 16 28 C -0.16 -1.34 9.65 22.61 0.22 -1.13 16 29 O -0.20 -2.11 8.79 -6.02 -0.05 -2.16 16 30 H 0.41 -5.44 8.74 -74.06 -0.65 -6.09 16 31 H 0.13 -1.01 7.96 -2.39 -0.02 -1.03 16 32 H -0.31 -3.38 7.11 99.48 0.71 -2.67 16 33 H -0.30 -2.05 7.11 99.48 0.71 -1.34 16 34 H 0.18 -0.33 8.06 -2.91 -0.02 -0.35 16 35 H 0.19 -1.14 7.24 -2.91 -0.02 -1.16 16 36 H 0.17 -1.67 6.95 -2.91 -0.02 -1.69 16 37 H 0.18 -2.04 6.38 -2.91 -0.02 -2.06 16 38 H 0.41 -2.98 5.66 -92.71 -0.52 -3.50 16 39 H 0.06 0.19 8.14 -2.38 -0.02 0.17 16 40 H 0.06 0.17 8.14 -2.39 -0.02 0.15 16 41 H 0.07 -0.48 7.18 -2.39 -0.02 -0.50 16 42 H 0.05 -0.05 8.14 -2.39 -0.02 -0.07 16 43 H 0.06 0.04 7.82 -2.39 -0.02 0.02 16 44 H 0.07 -0.33 8.14 -2.39 -0.02 -0.35 16 45 H 0.05 -0.18 8.14 -2.39 -0.02 -0.20 16 46 H 0.06 -0.26 8.14 -2.39 -0.02 -0.28 16 47 H 0.39 -2.97 9.12 -74.06 -0.68 -3.64 16 48 H 0.07 -0.32 8.14 -2.39 -0.02 -0.34 16 49 H 0.07 -0.45 8.14 -2.39 -0.02 -0.47 16 50 H 0.06 -0.12 8.14 -2.39 -0.02 -0.14 16 51 H 0.07 -0.30 8.14 -2.39 -0.02 -0.32 16 52 H 0.41 1.59 9.06 -74.06 -0.67 0.92 16 53 H 0.12 1.27 7.90 -2.92 -0.02 1.25 16 Total: 0.00 -33.87 431.69 -2.50 -36.37 By element: Atomic # 1 Polarization: -22.76 SS G_CDS: -1.50 Total: -24.26 kcal Atomic # 6 Polarization: 4.95 SS G_CDS: 3.71 Total: 8.66 kcal Atomic # 7 Polarization: 0.25 SS G_CDS: -2.44 Total: -2.20 kcal Atomic # 8 Polarization: -16.42 SS G_CDS: -4.48 Total: -20.89 kcal Atomic # 14 Polarization: 0.12 SS G_CDS: 2.20 Total: 2.32 kcal Total: -33.87 -2.50 -36.37 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14939082_12807986.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.962 kcal (2) G-P(sol) polarization free energy of solvation -33.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.79 seconds