Wall clock time and date at job start Sun Mar 7 2021 02:00:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.39285 * 121.02844 * 2 1 4 4 C 1.46492 * 134.20365 * 359.95322 * 3 2 1 5 5 C 1.50697 * 126.60277 * 0.02800 * 4 3 2 6 6 O 1.42898 * 109.47158 * 74.99538 * 5 4 3 7 7 Si 1.86298 * 109.47242 * 195.00115 * 5 4 3 8 8 C 1.34182 * 106.79884 * 180.02562 * 4 3 2 9 9 N 1.36945 * 109.95468 * 0.02562 * 8 4 3 10 10 C 1.37150 * 110.11252 * 359.97438 * 9 8 4 11 11 N 1.32822 * 132.96465 * 180.02562 * 10 9 8 12 12 C 1.31306 * 121.89382 * 179.74085 * 11 10 9 13 13 C 1.39753 * 121.03239 * 179.97438 * 2 1 3 14 14 C 1.47670 * 120.45273 * 0.02562 * 13 2 1 15 15 O 1.21574 * 119.99915 * 354.23803 * 14 13 2 16 16 N 1.34767 * 120.00095 * 174.24026 * 14 13 2 17 17 C 1.46497 * 120.00340 * 180.02562 * 16 14 13 18 18 C 1.52998 * 109.47709 * 179.97438 * 17 16 14 19 19 H 1.08996 * 109.46851 * 54.99801 * 18 17 16 20 20 C 1.52996 * 109.47387 * 174.99981 * 18 17 16 21 21 C 1.53002 * 109.47105 * 179.97438 * 20 18 17 22 22 C 1.52996 * 109.47368 * 300.00156 * 21 20 18 23 23 H 1.08996 * 109.47031 * 299.99726 * 22 21 20 24 24 C 1.53002 * 109.47368 * 179.97438 * 22 21 20 25 25 O 1.42898 * 109.47352 * 174.99973 * 24 22 21 26 26 C 1.52996 * 109.47135 * 59.99862 * 22 21 20 27 27 C 1.52998 * 109.47387 * 300.00089 * 26 22 21 28 28 H 1.09004 * 109.46652 * 263.79654 * 1 2 3 29 29 H 1.08995 * 109.47438 * 23.79574 * 1 2 3 30 30 H 1.09003 * 109.47093 * 143.80365 * 1 2 3 31 31 H 1.08999 * 109.46641 * 314.99601 * 5 4 3 32 32 H 0.96696 * 114.00242 * 60.00392 * 6 5 4 33 33 H 1.48500 * 110.00044 * 180.02562 * 7 5 4 34 34 H 1.48502 * 109.99573 * 301.31187 * 7 5 4 35 35 H 1.08004 * 125.02488 * 180.02562 * 8 4 3 36 36 H 0.97001 * 124.94707 * 180.02562 * 9 8 4 37 37 H 1.07999 * 119.31509 * 180.26830 * 12 11 10 38 38 H 0.97005 * 119.99935 * 359.97438 * 16 14 13 39 39 H 1.09007 * 109.47245 * 59.99464 * 17 16 14 40 40 H 1.09006 * 109.47310 * 300.00141 * 17 16 14 41 41 H 1.08996 * 109.47272 * 60.00078 * 20 18 17 42 42 H 1.08995 * 109.47102 * 299.99680 * 20 18 17 43 43 H 1.09002 * 109.47303 * 179.97438 * 21 20 18 44 44 H 1.09006 * 109.46876 * 60.00070 * 21 20 18 45 45 H 1.09006 * 109.46933 * 294.99913 * 24 22 21 46 46 H 1.09003 * 109.47309 * 54.99399 * 24 22 21 47 47 H 0.96700 * 114.00129 * 180.02562 * 25 24 22 48 48 H 1.08996 * 109.47272 * 60.00011 * 26 22 21 49 49 H 1.09004 * 109.47255 * 180.02562 * 26 22 21 50 50 H 1.09006 * 109.46906 * 300.00121 * 27 26 22 51 51 H 1.08996 * 109.47912 * 180.02562 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1935 0.0000 4 6 1.8516 2.6101 -0.0009 5 6 0.4527 3.1706 -0.0015 6 8 -0.1195 3.0247 1.2998 7 14 0.5074 4.9762 -0.4571 8 6 2.9949 3.3125 -0.0009 9 7 4.0669 2.4604 -0.0008 10 6 3.6348 1.1588 0.0000 11 7 4.2720 -0.0066 0.0009 12 6 3.6267 -1.1501 0.0065 13 6 2.2275 -1.1975 0.0005 14 6 1.5225 -2.4951 0.0005 15 8 0.3118 -2.5291 0.1058 16 7 2.2212 -3.6416 -0.1161 17 6 1.5219 -4.9288 -0.1166 18 6 2.5395 -6.0622 -0.2613 19 1 3.2921 -5.9768 0.5225 20 6 1.8241 -7.4089 -0.1369 21 6 2.8417 -8.5422 -0.2822 22 6 3.5177 -8.4483 -1.6515 23 1 2.7647 -8.5335 -2.4350 24 6 4.5357 -9.5812 -1.7966 25 8 5.0826 -9.5641 -3.1166 26 6 4.2330 -7.1016 -1.7759 27 6 3.2155 -5.9682 -1.6306 28 1 -0.3633 -0.1111 1.0217 29 1 -0.3634 0.9402 -0.4146 30 1 -0.3633 -0.8293 -0.6069 31 1 -0.1545 2.6308 -0.7281 32 1 0.3701 3.4804 1.9981 33 1 -0.8661 5.5409 -0.4606 34 1 1.3583 5.7178 0.5078 35 1 3.0600 4.3906 -0.0011 36 1 4.9966 2.7371 -0.0004 37 1 4.1869 -2.0734 0.0114 38 1 3.1872 -3.6144 -0.2004 39 1 0.8213 -4.9614 -0.9511 40 1 0.9769 -5.0467 0.8200 41 1 1.0715 -7.4942 -0.9207 42 1 1.3423 -7.4756 0.8384 43 1 2.3321 -9.5016 -0.1932 44 1 3.5947 -8.4570 0.5013 45 1 5.3366 -9.4453 -1.0697 46 1 4.0430 -10.5373 -1.6197 47 1 5.7367 -10.2572 -3.2804 48 1 4.9860 -7.0164 -0.9924 49 1 4.7143 -7.0345 -2.7516 50 1 2.4625 -6.0534 -2.4142 51 1 3.7250 -5.0088 -1.7197 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14939082_12890568.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:00:40 Heat of formation + Delta-G solvation = -62.897606 kcal Electronic energy + Delta-G solvation = -32264.617608 eV Core-core repulsion = 27937.098580 eV Total energy + Delta-G solvation = -4327.519027 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 360.188 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.86424 -41.10293 -40.01725 -38.77178 -37.86707 -37.59989 -35.99174 -34.97400 -33.04914 -31.92841 -31.68616 -31.02050 -29.03344 -27.98809 -26.44538 -25.11034 -24.43780 -23.83871 -23.48827 -21.80802 -21.61094 -20.77989 -20.61589 -19.32674 -18.83085 -18.19530 -17.75428 -17.56940 -17.04588 -16.76393 -16.59853 -16.32039 -16.01293 -15.92489 -15.62325 -15.46702 -15.24119 -15.10233 -14.82846 -14.64443 -14.59018 -14.22212 -14.06418 -13.84366 -13.70198 -13.63145 -13.43467 -13.31627 -13.08558 -13.07062 -12.79630 -12.49550 -12.43317 -12.02165 -11.88182 -11.79674 -11.38475 -11.31973 -11.16982 -11.08635 -11.04813 -10.76811 -10.55963 -10.27332 -10.16062 -9.62635 -9.13275 -4.84151 -0.35306 -0.09095 1.35014 1.40946 1.62106 1.67812 1.79722 2.04750 2.09108 2.74908 3.29995 3.32407 3.43977 3.55478 3.61087 3.65738 3.71242 3.71754 3.76491 3.79838 4.10663 4.13709 4.18861 4.26700 4.29794 4.32968 4.37654 4.47353 4.51726 4.53334 4.59957 4.61143 4.67976 4.70037 4.72333 4.78881 4.79929 4.85050 4.97421 5.00487 5.11209 5.16687 5.18244 5.24079 5.24769 5.26585 5.31646 5.36925 5.45261 5.48431 5.58696 5.72648 6.21199 6.46276 6.59419 6.82008 6.89497 7.15897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.062 3.938 3 C -0.165 4.165 4 C -0.197 4.197 5 C -0.060 4.060 6 O -0.550 6.550 7 Si 0.781 3.219 8 C 0.091 3.909 9 N -0.559 5.559 10 C 0.289 3.711 11 N -0.515 5.515 12 C 0.180 3.820 13 C -0.241 4.241 14 C 0.568 3.432 15 O -0.568 6.568 16 N -0.712 5.712 17 C 0.127 3.873 18 C -0.088 4.088 19 H 0.092 0.908 20 C -0.111 4.111 21 C -0.107 4.107 22 C -0.090 4.090 23 H 0.061 0.939 24 C 0.075 3.925 25 O -0.596 6.596 26 C -0.106 4.106 27 C -0.113 4.113 28 H 0.069 0.931 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.110 0.890 32 H 0.385 0.615 33 H -0.308 1.308 34 H -0.259 1.259 35 H 0.221 0.779 36 H 0.439 0.561 37 H 0.192 0.808 38 H 0.411 0.589 39 H 0.058 0.942 40 H 0.063 0.937 41 H 0.061 0.939 42 H 0.074 0.926 43 H 0.069 0.931 44 H 0.074 0.926 45 H 0.055 0.945 46 H 0.051 0.949 47 H 0.395 0.605 48 H 0.069 0.931 49 H 0.054 0.946 50 H 0.054 0.946 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.618 0.990 -0.564 6.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.053 3.947 3 C -0.172 4.172 4 C -0.204 4.204 5 C -0.168 4.168 6 O -0.357 6.357 7 Si 0.683 3.317 8 C -0.036 4.036 9 N -0.166 5.166 10 C 0.055 3.945 11 N -0.229 5.229 12 C 0.012 3.988 13 C -0.248 4.248 14 C 0.356 3.644 15 O -0.449 6.449 16 N -0.364 5.364 17 C 0.004 3.996 18 C -0.107 4.107 19 H 0.110 0.890 20 C -0.149 4.149 21 C -0.145 4.145 22 C -0.109 4.109 23 H 0.079 0.921 24 C -0.002 4.002 25 O -0.405 6.405 26 C -0.143 4.143 27 C -0.151 4.151 28 H 0.088 0.912 29 H 0.094 0.906 30 H 0.101 0.899 31 H 0.128 0.872 32 H 0.234 0.766 33 H -0.236 1.236 34 H -0.184 1.184 35 H 0.237 0.763 36 H 0.280 0.720 37 H 0.209 0.791 38 H 0.249 0.751 39 H 0.076 0.924 40 H 0.082 0.918 41 H 0.079 0.921 42 H 0.093 0.907 43 H 0.088 0.912 44 H 0.093 0.907 45 H 0.073 0.927 46 H 0.069 0.931 47 H 0.244 0.756 48 H 0.088 0.912 49 H 0.073 0.927 50 H 0.073 0.927 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 5.818 2.060 -0.626 6.204 hybrid contribution 0.138 -0.959 1.165 1.515 sum 5.956 1.101 0.539 6.081 Atomic orbital electron populations 1.20998 0.89413 1.03368 1.02996 1.20064 0.97010 0.90207 0.87386 1.19740 0.93263 0.94393 1.09800 1.20711 0.96133 0.90217 1.13329 1.24814 0.90578 1.13776 0.87615 1.86605 1.55033 1.76697 1.17415 0.94118 0.79218 0.70050 0.88302 1.22328 0.83972 0.97206 1.00109 1.41597 1.10612 1.01689 1.62697 1.18767 0.89492 0.86850 0.99392 1.66509 1.40825 0.96460 1.19070 1.22929 0.89651 0.95287 0.90976 1.20508 0.95462 0.93360 1.15476 1.18014 0.86449 0.84059 0.75887 1.90743 1.15127 1.87595 1.51396 1.45791 1.11343 1.05189 1.74092 1.21427 0.95098 0.81344 1.01754 1.21353 0.97179 0.93492 0.98639 0.89011 1.21471 0.97826 0.92966 1.02591 1.21462 0.98409 0.98808 0.95780 1.21183 0.96893 0.94633 0.98169 0.92090 1.22323 0.96073 0.98124 0.83681 1.86435 1.62511 1.59088 1.32437 1.21460 0.97662 0.93407 1.01804 1.21606 0.98287 0.98838 0.96366 0.91216 0.90581 0.89931 0.87177 0.76638 1.23643 1.18388 0.76283 0.72019 0.79106 0.75051 0.92401 0.91848 0.92053 0.90730 0.91192 0.90748 0.92698 0.93122 0.75598 0.91220 0.92723 0.92727 0.91074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.06 8.69 71.24 0.62 -0.45 16 2 C 0.06 0.54 5.98 -19.24 -0.12 0.42 16 3 C -0.16 -1.01 6.16 -20.19 -0.12 -1.13 16 4 C -0.20 -0.07 5.57 -18.64 -0.10 -0.17 16 5 C -0.06 0.02 2.06 71.23 0.15 0.16 16 6 O -0.55 -1.81 12.88 -148.98 -1.92 -3.73 16 7 Si 0.78 -3.84 30.83 68.60 2.11 -1.72 16 8 C 0.09 -0.49 10.44 82.97 0.87 0.38 16 9 N -0.56 1.68 6.04 -192.25 -1.16 0.52 16 10 C 0.29 1.30 8.42 134.02 1.13 2.43 16 11 N -0.52 -2.71 10.37 -191.76 -1.99 -4.70 16 12 C 0.18 0.47 10.67 85.20 0.91 1.38 16 13 C -0.24 -1.56 5.89 -19.99 -0.12 -1.68 16 14 C 0.57 4.20 7.72 86.74 0.67 4.87 16 15 O -0.57 -8.27 13.49 -3.95 -0.05 -8.32 16 16 N -0.71 -0.17 5.24 -466.15 -2.44 -2.61 16 17 C 0.13 0.01 5.06 86.38 0.44 0.45 16 18 C -0.09 0.36 2.23 -10.79 -0.02 0.34 16 19 H 0.09 -0.56 8.14 -2.39 -0.02 -0.58 16 20 C -0.11 0.41 5.20 30.59 0.16 0.56 16 21 C -0.11 0.44 5.20 30.59 0.16 0.60 16 22 C -0.09 0.12 2.43 -10.80 -0.03 0.09 16 23 H 0.06 0.13 8.14 -2.39 -0.02 0.11 16 24 C 0.08 -0.13 6.43 71.98 0.46 0.33 16 25 O -0.60 -0.78 13.19 -148.98 -1.97 -2.74 16 26 C -0.11 0.17 5.10 30.59 0.16 0.33 16 27 C -0.11 0.33 5.08 30.60 0.16 0.48 16 28 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 29 H 0.08 0.55 5.06 -2.39 -0.01 0.53 16 30 H 0.08 1.01 5.94 -2.39 -0.01 1.00 16 31 H 0.11 0.08 6.05 -2.39 -0.01 0.07 16 32 H 0.38 -1.18 8.70 -74.06 -0.64 -1.83 16 33 H -0.31 -1.32 7.11 99.48 0.71 -0.62 16 34 H -0.26 1.21 7.00 99.48 0.70 1.91 16 35 H 0.22 -2.94 6.28 -2.91 -0.02 -2.96 16 36 H 0.44 -3.74 8.96 -92.71 -0.83 -4.57 16 37 H 0.19 -1.03 6.43 -2.91 -0.02 -1.05 16 38 H 0.41 -2.27 5.73 -92.70 -0.53 -2.80 16 39 H 0.06 0.18 8.14 -2.38 -0.02 0.16 16 40 H 0.06 0.13 8.14 -2.38 -0.02 0.11 16 41 H 0.06 -0.12 8.14 -2.39 -0.02 -0.14 16 42 H 0.07 -0.32 8.14 -2.39 -0.02 -0.34 16 43 H 0.07 -0.31 8.14 -2.39 -0.02 -0.33 16 44 H 0.07 -0.41 8.14 -2.38 -0.02 -0.43 16 45 H 0.05 -0.21 8.14 -2.38 -0.02 -0.23 16 46 H 0.05 -0.16 8.14 -2.39 -0.02 -0.18 16 47 H 0.39 -2.71 9.12 -74.06 -0.68 -3.38 16 48 H 0.07 -0.23 8.14 -2.39 -0.02 -0.24 16 49 H 0.05 0.11 7.82 -2.38 -0.02 0.09 16 50 H 0.05 0.00 8.14 -2.38 -0.02 -0.02 16 51 H 0.07 -0.32 7.18 -2.39 -0.02 -0.34 16 Total: 0.00 -25.46 397.59 -3.70 -29.16 By element: Atomic # 1 Polarization: -13.61 SS G_CDS: -1.64 Total: -15.25 kcal Atomic # 6 Polarization: 4.05 SS G_CDS: 5.36 Total: 9.40 kcal Atomic # 7 Polarization: -1.20 SS G_CDS: -5.59 Total: -6.79 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: -3.94 Total: -14.79 kcal Atomic # 14 Polarization: -3.84 SS G_CDS: 2.11 Total: -1.72 kcal Total: -25.46 -3.70 -29.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14939082_12890568.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.741 kcal (2) G-P(sol) polarization free energy of solvation -25.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds