Wall clock time and date at job start Sun Mar 7 2021 02:00:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86301 * 109.47256 * 2 1 4 4 C 1.50699 * 109.46964 * 239.99985 * 2 1 3 5 5 C 1.34706 * 125.66608 * 299.71871 * 4 2 1 6 6 C 1.40969 * 107.02828 * 179.85189 * 5 4 2 7 7 C 1.35937 * 106.74392 * 0.40425 * 6 5 4 8 8 C 1.47809 * 125.93147 * 179.75162 * 7 6 5 9 9 C 1.39804 * 120.00035 * 0.02562 * 8 7 6 10 10 C 1.37818 * 120.24424 * 180.02562 * 9 8 7 11 11 C 1.38776 * 120.24727 * 0.02562 * 10 9 8 12 12 O 1.35644 * 120.00380 * 179.97438 * 11 10 9 13 13 C 1.40250 * 119.99054 * 0.02562 * 11 10 9 14 14 C 1.47567 * 120.11865 * 180.02562 * 13 11 10 15 15 O 1.21585 * 119.99949 * 359.97438 * 14 13 11 16 16 N 1.34776 * 120.00102 * 180.02562 * 14 13 11 17 17 C 1.46504 * 120.00194 * 180.02562 * 16 14 13 18 18 C 1.52999 * 109.47190 * 179.97438 * 17 16 14 19 19 H 1.08996 * 109.47419 * 54.99510 * 18 17 16 20 20 C 1.52994 * 109.47053 * 174.99784 * 18 17 16 21 21 C 1.52997 * 109.47223 * 179.97438 * 20 18 17 22 22 C 1.52997 * 109.47377 * 299.99876 * 21 20 18 23 23 H 1.08996 * 109.47001 * 300.00002 * 22 21 20 24 24 C 1.52998 * 109.47485 * 179.97438 * 22 21 20 25 25 O 1.42894 * 109.47293 * 174.99992 * 24 22 21 26 26 C 1.53002 * 109.47000 * 59.99849 * 22 21 20 27 27 C 1.52997 * 109.47178 * 300.00272 * 26 22 21 28 28 C 1.39217 * 120.00127 * 179.75530 * 8 7 6 29 29 O 1.34345 * 125.66280 * 120.02124 * 4 2 1 30 30 H 0.96708 * 113.99549 * 300.00274 * 1 2 3 31 31 H 1.09002 * 109.47259 * 120.00198 * 2 1 3 32 32 H 1.48501 * 110.00188 * 178.68319 * 3 2 1 33 33 H 1.48498 * 110.00005 * 300.00280 * 3 2 1 34 34 H 1.08000 * 126.48216 * 359.97438 * 5 4 2 35 35 H 1.07996 * 126.62872 * 180.12085 * 6 5 4 36 36 H 1.07998 * 119.88113 * 0.02836 * 9 8 7 37 37 H 1.07996 * 119.87697 * 180.02562 * 10 9 8 38 38 H 0.96695 * 114.00040 * 90.00468 * 12 11 10 39 39 H 0.96998 * 119.99933 * 359.97438 * 16 14 13 40 40 H 1.09005 * 109.46651 * 299.99375 * 17 16 14 41 41 H 1.08993 * 109.47192 * 59.99318 * 17 16 14 42 42 H 1.08999 * 109.47414 * 299.99671 * 20 18 17 43 43 H 1.09006 * 109.47240 * 59.99666 * 20 18 17 44 44 H 1.09006 * 109.47007 * 59.99864 * 21 20 18 45 45 H 1.08997 * 109.47311 * 179.97438 * 21 20 18 46 46 H 1.08997 * 109.47599 * 295.00278 * 24 22 21 47 47 H 1.09011 * 109.46471 * 55.00470 * 24 22 21 48 48 H 0.96702 * 114.00493 * 180.02562 * 25 24 22 49 49 H 1.09006 * 109.47127 * 60.00169 * 26 22 21 50 50 H 1.08999 * 109.47571 * 180.02562 * 26 22 21 51 51 H 1.09006 * 109.47007 * 299.99970 * 27 26 22 52 52 H 1.08999 * 109.47793 * 180.02562 * 27 26 22 53 53 H 1.07995 * 120.11888 * 359.97438 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 1.6815 -1.9942 -1.5531 6 6 2.3345 -2.2468 -2.7767 7 6 2.9604 -1.0937 -3.1320 8 6 3.7772 -0.8888 -4.3468 9 6 3.9593 -1.9386 -5.2519 10 6 4.7202 -1.7533 -6.3859 11 6 5.3118 -0.5234 -6.6375 12 8 6.0602 -0.3467 -7.7549 13 6 5.1367 0.5364 -5.7358 14 6 5.7640 1.8455 -6.0009 15 8 6.4345 2.0067 -7.0022 16 7 5.5945 2.8622 -5.1325 17 6 6.2169 4.1620 -5.3959 18 6 5.8698 5.1322 -4.2649 19 1 6.1618 4.6961 -3.3096 20 6 6.6195 6.4493 -4.4747 21 6 6.2719 7.4197 -3.3441 22 6 4.7651 7.6850 -3.3448 23 1 4.4734 8.1209 -4.3003 24 6 4.4174 8.6549 -2.2138 25 8 3.0311 8.9935 -2.2860 26 6 4.0153 6.3679 -3.1349 27 6 4.3629 5.3974 -4.2655 28 6 4.3604 0.3512 -4.5925 29 8 2.7072 -0.1702 -2.1849 30 1 -0.3933 0.4418 0.7651 31 1 1.7923 -0.5139 0.8900 32 1 3.5346 1.7703 0.0321 33 1 1.5615 2.4679 -1.2084 34 1 1.0910 -2.6963 -0.9833 35 1 2.3404 -3.1781 -3.3236 36 1 3.5020 -2.8983 -5.0618 37 1 4.8567 -2.5682 -7.0813 38 1 5.5567 -0.0392 -8.5210 39 1 5.0599 2.7334 -4.3334 40 1 7.2988 4.0419 -5.4528 41 1 5.8451 4.5580 -6.3408 42 1 7.6930 6.2604 -4.4746 43 1 6.3274 6.8854 -5.4301 44 1 6.5637 6.9838 -2.3886 45 1 6.8064 8.3579 -3.4934 46 1 4.6268 8.1835 -1.2536 47 1 5.0180 9.5592 -2.3133 48 1 2.7396 9.6070 -1.5976 49 1 4.3071 5.9319 -2.1794 50 1 2.9418 6.5567 -3.1359 51 1 4.0711 5.8334 -5.2211 52 1 3.8285 4.4592 -4.1164 53 1 4.2171 1.1649 -3.8970 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14939082_13259648.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:00:57 Heat of formation + Delta-G solvation = -130.460917 kcal Electronic energy + Delta-G solvation = -36314.429719 eV Core-core repulsion = 31504.779843 eV Total energy + Delta-G solvation = -4809.649876 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 388.181 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -43.83519 -41.71808 -40.43374 -39.59278 -38.13019 -37.80142 -37.62396 -35.89076 -34.38035 -33.40624 -32.84887 -32.11249 -31.79710 -30.19339 -28.26409 -26.41116 -25.63153 -24.60341 -23.80083 -23.49815 -22.89559 -21.79875 -21.75776 -21.28257 -20.80638 -19.77181 -19.09569 -18.65784 -18.24524 -17.90638 -17.43253 -17.20126 -16.90153 -16.57074 -16.36846 -16.35825 -16.04887 -15.90226 -15.81720 -15.51592 -15.22088 -14.99451 -14.76783 -14.61987 -14.54005 -14.38153 -14.20276 -14.05008 -13.97147 -13.68646 -13.50003 -13.27724 -13.21307 -13.18308 -12.90403 -12.69326 -12.58056 -12.21085 -12.13917 -12.01906 -11.97903 -11.49169 -11.26825 -11.18357 -11.15092 -10.99046 -10.82582 -10.70114 -10.46873 -10.37094 -10.19623 -9.00959 -5.10868 -0.67263 -0.34425 0.64429 1.14523 1.34306 1.49594 1.62498 1.75667 1.92649 1.97210 2.50931 3.00345 3.12234 3.25961 3.34982 3.47005 3.56027 3.63413 3.65785 3.70318 3.73672 3.91211 3.94949 4.00793 4.08018 4.10343 4.24389 4.25092 4.35333 4.36287 4.38358 4.44863 4.48907 4.52500 4.53120 4.59064 4.63205 4.68115 4.70210 4.72615 4.78938 4.86369 4.91270 5.00349 5.03174 5.05781 5.09655 5.10612 5.15354 5.19404 5.27231 5.35446 5.36851 5.40782 5.47185 5.87256 6.24982 6.64474 6.81840 6.87491 6.96982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.560 6.560 2 C -0.039 4.039 3 Si 0.795 3.205 4 C -0.033 4.033 5 C -0.175 4.175 6 C -0.184 4.184 7 C 0.013 3.987 8 C -0.044 4.044 9 C -0.042 4.042 10 C -0.141 4.141 11 C 0.166 3.834 12 O -0.492 6.492 13 C -0.179 4.179 14 C 0.555 3.445 15 O -0.556 6.556 16 N -0.719 5.719 17 C 0.126 3.874 18 C -0.090 4.090 19 H 0.084 0.916 20 C -0.109 4.109 21 C -0.107 4.107 22 C -0.089 4.089 23 H 0.064 0.936 24 C 0.076 3.924 25 O -0.596 6.596 26 C -0.107 4.107 27 C -0.114 4.114 28 C -0.059 4.059 29 O -0.193 6.193 30 H 0.413 0.587 31 H 0.124 0.876 32 H -0.288 1.288 33 H -0.303 1.303 34 H 0.171 0.829 35 H 0.183 0.817 36 H 0.170 0.830 37 H 0.171 0.829 38 H 0.411 0.589 39 H 0.406 0.594 40 H 0.065 0.935 41 H 0.062 0.938 42 H 0.076 0.924 43 H 0.065 0.935 44 H 0.072 0.928 45 H 0.075 0.925 46 H 0.055 0.945 47 H 0.054 0.946 48 H 0.395 0.605 49 H 0.065 0.935 50 H 0.055 0.945 51 H 0.059 0.941 52 H 0.057 0.943 53 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.299 0.154 8.078 8.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.371 6.371 2 C -0.148 4.148 3 Si 0.700 3.300 4 C -0.082 4.082 5 C -0.194 4.194 6 C -0.202 4.202 7 C -0.036 4.036 8 C -0.044 4.044 9 C -0.060 4.060 10 C -0.159 4.159 11 C 0.120 3.880 12 O -0.306 6.306 13 C -0.183 4.183 14 C 0.343 3.657 15 O -0.435 6.435 16 N -0.371 5.371 17 C 0.003 3.997 18 C -0.108 4.108 19 H 0.103 0.897 20 C -0.147 4.147 21 C -0.145 4.145 22 C -0.107 4.107 23 H 0.082 0.918 24 C -0.001 4.001 25 O -0.404 6.404 26 C -0.144 4.144 27 C -0.152 4.152 28 C -0.078 4.078 29 O -0.092 6.092 30 H 0.266 0.734 31 H 0.141 0.859 32 H -0.215 1.215 33 H -0.231 1.231 34 H 0.189 0.811 35 H 0.200 0.800 36 H 0.188 0.812 37 H 0.188 0.812 38 H 0.272 0.728 39 H 0.243 0.757 40 H 0.083 0.917 41 H 0.080 0.920 42 H 0.095 0.905 43 H 0.083 0.917 44 H 0.091 0.909 45 H 0.094 0.906 46 H 0.073 0.927 47 H 0.072 0.928 48 H 0.245 0.755 49 H 0.084 0.916 50 H 0.074 0.926 51 H 0.078 0.922 52 H 0.075 0.925 53 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -1.668 0.310 6.250 6.476 hybrid contribution -0.613 0.033 0.091 0.621 sum -2.281 0.343 6.340 6.747 Atomic orbital electron populations 1.86406 1.16097 1.82569 1.52074 1.23932 0.86475 1.11690 0.92693 0.94406 0.77365 0.74091 0.84138 1.22079 0.98986 0.94153 0.92962 1.21847 1.03345 0.96041 0.98136 1.22232 1.00560 0.99364 0.98060 1.20583 1.03497 0.88694 0.90845 1.17755 0.99307 0.95010 0.92315 1.21448 0.94974 0.98738 0.90853 1.21627 0.97434 0.97371 0.99506 1.18858 0.89209 0.91777 0.88174 1.84699 1.36716 1.88849 1.20309 1.20272 1.04325 0.94619 0.99070 1.18257 0.80274 0.84197 0.83007 1.90801 1.40647 1.83627 1.28455 1.45947 1.53619 1.11772 1.25786 1.21474 0.97744 0.81547 0.98956 1.21368 0.95888 0.95531 0.98051 0.89742 1.21467 1.00278 0.93670 0.99252 1.21468 0.93836 0.99870 0.99296 1.21169 0.95888 0.95053 0.98604 0.91787 1.22300 0.81903 0.97678 0.98226 1.86435 1.26184 1.69438 1.58386 1.21468 0.99913 0.94683 0.98363 1.21603 0.95070 0.99162 0.99358 1.21291 0.94068 0.97164 0.95230 1.83923 1.56269 1.40278 1.28761 0.73358 0.85881 1.21522 1.23071 0.81132 0.79988 0.81228 0.81181 0.72766 0.75740 0.91664 0.91980 0.90537 0.91665 0.90897 0.90624 0.92699 0.92763 0.75491 0.91625 0.92607 0.92185 0.92474 0.84903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 1.39 12.85 -148.98 -1.91 -0.53 16 2 C -0.04 0.08 2.97 71.24 0.21 0.29 16 3 Si 0.79 -1.86 32.10 68.60 2.20 0.34 16 4 C -0.03 -0.17 6.25 24.87 0.16 -0.01 16 5 C -0.17 -0.57 10.77 22.13 0.24 -0.34 16 6 C -0.18 -0.40 10.26 22.40 0.23 -0.17 16 7 C 0.01 0.07 7.03 24.27 0.17 0.24 16 8 C -0.04 -0.16 5.87 -20.13 -0.12 -0.27 16 9 C -0.04 0.05 9.54 22.55 0.22 0.26 16 10 C -0.14 0.03 9.96 22.30 0.22 0.25 16 11 C 0.17 0.92 6.72 22.89 0.15 1.08 16 12 O -0.49 -3.49 11.55 -68.60 -0.79 -4.28 16 13 C -0.18 -1.27 5.88 -20.04 -0.12 -1.39 16 14 C 0.55 5.63 7.76 86.70 0.67 6.30 16 15 O -0.56 -9.33 15.14 17.00 0.26 -9.08 16 16 N -0.72 -3.37 5.23 -466.23 -2.44 -5.81 16 17 C 0.13 0.41 5.06 86.38 0.44 0.84 16 18 C -0.09 0.08 2.23 -10.79 -0.02 0.06 16 19 H 0.08 -0.16 8.14 -2.39 -0.02 -0.18 16 20 C -0.11 0.24 5.20 30.59 0.16 0.39 16 21 C -0.11 0.34 5.20 30.59 0.16 0.50 16 22 C -0.09 0.02 2.43 -10.79 -0.03 0.00 16 23 H 0.06 0.17 8.14 -2.39 -0.02 0.15 16 24 C 0.08 -0.11 6.43 71.98 0.46 0.35 16 25 O -0.60 -0.87 13.19 -148.98 -1.97 -2.84 16 26 C -0.11 -0.10 5.10 30.59 0.16 0.06 16 27 C -0.11 -0.07 5.07 30.59 0.16 0.09 16 28 C -0.06 -0.28 9.20 22.79 0.21 -0.07 16 29 O -0.19 -1.56 8.78 -6.61 -0.06 -1.61 16 30 H 0.41 -5.75 8.74 -74.05 -0.65 -6.39 16 31 H 0.12 -0.98 7.96 -2.39 -0.02 -0.99 16 32 H -0.29 -1.02 7.11 99.48 0.71 -0.31 16 33 H -0.30 -2.04 7.11 99.48 0.71 -1.33 16 34 H 0.17 -0.10 8.06 -2.91 -0.02 -0.12 16 35 H 0.18 -0.79 7.24 -2.91 -0.02 -0.81 16 36 H 0.17 -1.25 6.96 -2.91 -0.02 -1.27 16 37 H 0.17 -0.90 8.06 -2.91 -0.02 -0.92 16 38 H 0.41 -0.09 9.06 -74.06 -0.67 -0.76 16 39 H 0.41 0.51 5.68 -92.71 -0.53 -0.02 16 40 H 0.07 0.31 8.14 -2.38 -0.02 0.30 16 41 H 0.06 0.33 8.14 -2.39 -0.02 0.31 16 42 H 0.08 -0.23 8.14 -2.39 -0.02 -0.25 16 43 H 0.06 -0.07 8.14 -2.38 -0.02 -0.09 16 44 H 0.07 -0.30 8.14 -2.38 -0.02 -0.32 16 45 H 0.08 -0.32 8.14 -2.39 -0.02 -0.34 16 46 H 0.05 -0.19 8.14 -2.39 -0.02 -0.21 16 47 H 0.05 -0.18 8.14 -2.38 -0.02 -0.20 16 48 H 0.40 -2.76 9.12 -74.06 -0.68 -3.43 16 49 H 0.07 -0.02 8.14 -2.38 -0.02 -0.04 16 50 H 0.06 0.24 7.82 -2.39 -0.02 0.22 16 51 H 0.06 0.14 8.14 -2.38 -0.02 0.12 16 52 H 0.06 0.06 7.18 -2.39 -0.02 0.04 16 53 H 0.13 0.41 6.24 -2.91 -0.02 0.40 16 Total: 0.00 -29.33 431.83 -2.49 -31.82 By element: Atomic # 1 Polarization: -14.95 SS G_CDS: -1.50 Total: -16.45 kcal Atomic # 6 Polarization: 4.73 SS G_CDS: 3.72 Total: 8.45 kcal Atomic # 7 Polarization: -3.37 SS G_CDS: -2.44 Total: -5.81 kcal Atomic # 8 Polarization: -13.86 SS G_CDS: -4.47 Total: -18.34 kcal Atomic # 14 Polarization: -1.86 SS G_CDS: 2.20 Total: 0.34 kcal Total: -29.33 -2.49 -31.82 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14939082_13259648.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.643 kcal (2) G-P(sol) polarization free energy of solvation -29.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds