Wall clock time and date at job start Sun Mar 7 2021 02:01:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36411 * 125.80078 * 2 1 4 4 C 1.47379 * 127.19452 * 359.96486 * 3 2 1 5 5 O 1.21614 * 119.99695 * 359.97438 * 4 3 2 6 6 N 1.34772 * 120.00244 * 180.02562 * 4 3 2 7 7 C 1.46507 * 120.00342 * 179.97438 * 6 4 3 8 8 C 1.52997 * 109.47321 * 179.97438 * 7 6 4 9 9 H 1.08992 * 109.47280 * 305.00162 * 8 7 6 10 10 C 1.53002 * 109.46978 * 65.00089 * 8 7 6 11 11 C 1.52997 * 109.46978 * 180.02562 * 10 8 7 12 12 C 1.53006 * 109.47164 * 299.99874 * 11 10 8 13 13 H 1.08998 * 109.46505 * 299.99708 * 12 11 10 14 14 C 1.52992 * 109.47223 * 180.02562 * 12 11 10 15 15 O 1.42905 * 109.47641 * 64.99686 * 14 12 11 16 16 C 1.52997 * 109.47127 * 59.99836 * 12 11 10 17 17 C 1.52996 * 109.46975 * 184.99627 * 8 7 6 18 18 C 1.47021 * 105.61639 * 180.22080 * 3 2 1 19 19 C 1.34173 * 105.95224 * 359.63195 * 18 3 2 20 20 C 1.50705 * 125.44028 * 180.12193 * 19 18 3 21 21 O 1.42897 * 109.47045 * 65.26596 * 20 19 18 22 22 Si 1.86297 * 109.47343 * 185.26921 * 20 19 18 23 23 O 1.33654 * 125.80297 * 179.97438 * 2 1 3 24 24 H 1.09005 * 109.47076 * 89.99835 * 1 2 3 25 25 H 1.09003 * 109.47225 * 209.99862 * 1 2 3 26 26 H 1.09000 * 109.47275 * 330.00589 * 1 2 3 27 27 H 0.97003 * 120.00351 * 359.97438 * 6 4 3 28 28 H 1.08994 * 109.46961 * 59.99195 * 7 6 4 29 29 H 1.09000 * 109.46503 * 299.99769 * 7 6 4 30 30 H 1.09002 * 109.47097 * 299.99801 * 10 8 7 31 31 H 1.09001 * 109.47142 * 59.99766 * 10 8 7 32 32 H 1.09001 * 109.47375 * 59.99908 * 11 10 8 33 33 H 1.09000 * 109.47140 * 179.97438 * 11 10 8 34 34 H 1.09001 * 109.47563 * 185.00049 * 14 12 11 35 35 H 1.09004 * 109.47313 * 304.99704 * 14 12 11 36 36 H 0.96695 * 114.00050 * 180.02562 * 15 14 12 37 37 H 1.09002 * 109.47153 * 180.02562 * 16 12 11 38 38 H 1.09001 * 109.46832 * 60.00321 * 16 12 11 39 39 H 1.09004 * 109.47368 * 60.00217 * 17 8 7 40 40 H 1.09001 * 109.47372 * 300.00372 * 17 8 7 41 41 H 1.08008 * 127.02512 * 179.73745 * 18 3 2 42 42 H 1.09008 * 109.46676 * 305.26903 * 20 19 18 43 43 H 0.96695 * 114.00221 * 180.02562 * 21 20 19 44 44 H 1.48505 * 109.99576 * 299.99819 * 22 20 19 45 45 H 1.48500 * 110.00325 * 61.31824 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.1064 0.0000 4 6 1.8739 2.5157 -0.0007 5 8 0.6889 2.7891 -0.0019 6 7 2.7930 3.5015 -0.0011 7 6 2.3645 4.9025 -0.0024 8 6 3.5948 5.8121 -0.0020 9 1 4.2366 5.5547 0.8404 10 6 4.3683 5.6242 -1.3086 11 6 5.5989 6.5333 -1.3080 12 6 5.1551 7.9923 -1.1833 13 1 4.5135 8.2500 -2.0258 14 6 6.3857 8.9014 -1.1832 15 8 7.0433 8.8131 -2.4489 16 6 4.3815 8.1802 0.1233 17 6 3.1504 7.2708 0.1223 18 6 3.6849 0.5991 -0.0055 19 6 3.5859 -0.7390 0.0001 20 6 4.7459 -1.7010 0.0002 21 8 5.4763 -1.5664 1.2210 22 14 4.1069 -3.4444 -0.1522 23 8 2.2889 -1.0840 0.0005 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5137 27 1 3.7382 3.2835 -0.0006 28 1 1.7665 5.1003 0.8871 29 1 1.7673 5.0989 -0.8928 30 1 4.6849 4.5849 -1.3972 31 1 3.7264 5.8816 -2.1511 32 1 6.2407 6.2755 -0.4655 33 1 6.1503 6.3991 -2.2386 34 1 6.0765 9.9314 -1.0055 35 1 7.0701 8.5865 -0.3954 36 1 7.8344 9.3646 -2.5204 37 1 4.0650 9.2194 0.2119 38 1 5.0233 7.9223 0.9658 39 1 2.5993 7.4048 1.0531 40 1 2.5085 7.5282 -0.7202 41 1 4.5928 1.1840 -0.0109 42 1 5.4017 -1.4795 -0.8419 43 1 6.2391 -2.1566 1.2900 44 1 3.2115 -3.7587 0.9901 45 1 3.3725 -3.6061 -1.4327 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14939082_13308374.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:01:22 Heat of formation + Delta-G solvation = -126.093748 kcal Electronic energy + Delta-G solvation = -25877.615321 eV Core-core repulsion = 22055.279192 eV Total energy + Delta-G solvation = -3822.336128 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 310.166 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.92606 -40.89244 -39.88597 -37.90687 -37.63613 -35.88451 -34.37489 -33.38433 -32.68480 -31.72120 -29.66953 -28.23740 -25.92929 -24.93188 -24.04429 -23.53709 -22.14833 -21.72987 -20.96515 -20.53590 -18.76313 -18.49345 -18.20307 -17.44387 -17.14374 -17.05154 -16.61650 -16.11212 -15.91765 -15.80841 -15.66016 -15.16541 -14.94749 -14.77895 -14.62678 -14.33539 -14.22206 -14.18997 -13.99694 -13.93245 -13.47256 -13.18078 -13.11300 -12.84083 -12.63726 -12.52039 -12.22313 -12.06349 -11.92799 -11.42831 -11.32847 -11.08782 -11.07749 -11.06214 -10.78666 -10.47675 -10.21909 -9.69798 -5.09700 0.07477 0.70345 1.15509 1.39292 1.62978 2.00520 2.08070 2.14240 3.13062 3.29824 3.58443 3.59795 3.63364 3.65970 3.71853 3.74997 4.02385 4.07717 4.16201 4.23102 4.29364 4.35821 4.42826 4.43135 4.46509 4.49641 4.52925 4.56836 4.62874 4.66495 4.68514 4.74958 4.80028 4.94059 4.98533 5.07186 5.09699 5.13836 5.19638 5.22424 5.27937 5.35401 5.44230 5.54312 5.75654 6.38960 6.83867 6.88549 7.05865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.074 3.926 3 C -0.264 4.264 4 C 0.588 3.412 5 O -0.575 6.575 6 N -0.708 5.708 7 C 0.126 3.874 8 C -0.087 4.087 9 H 0.089 0.911 10 C -0.113 4.113 11 C -0.105 4.105 12 C -0.090 4.090 13 H 0.061 0.939 14 C 0.076 3.924 15 O -0.596 6.596 16 C -0.107 4.107 17 C -0.110 4.110 18 C -0.140 4.140 19 C -0.037 4.037 20 C -0.035 4.035 21 O -0.559 6.559 22 Si 0.805 3.195 23 O -0.193 6.193 24 H 0.100 0.900 25 H 0.092 0.908 26 H 0.102 0.898 27 H 0.412 0.588 28 H 0.064 0.936 29 H 0.059 0.941 30 H 0.068 0.932 31 H 0.054 0.946 32 H 0.068 0.932 33 H 0.055 0.945 34 H 0.051 0.949 35 H 0.055 0.945 36 H 0.395 0.605 37 H 0.071 0.929 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.062 0.938 41 H 0.187 0.813 42 H 0.130 0.870 43 H 0.414 0.586 44 H -0.309 1.309 45 H -0.296 1.296 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.052 -0.363 0.514 8.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.021 3.979 3 C -0.269 4.269 4 C 0.377 3.623 5 O -0.456 6.456 6 N -0.359 5.359 7 C 0.003 3.997 8 C -0.106 4.106 9 H 0.107 0.893 10 C -0.150 4.150 11 C -0.143 4.143 12 C -0.109 4.109 13 H 0.080 0.920 14 C -0.002 4.002 15 O -0.405 6.405 16 C -0.145 4.145 17 C -0.148 4.148 18 C -0.159 4.159 19 C -0.084 4.084 20 C -0.145 4.145 21 O -0.371 6.371 22 Si 0.712 3.288 23 O -0.091 6.091 24 H 0.119 0.881 25 H 0.111 0.889 26 H 0.120 0.880 27 H 0.249 0.751 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.086 0.914 31 H 0.073 0.927 32 H 0.087 0.913 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.244 0.756 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.081 0.919 41 H 0.204 0.796 42 H 0.148 0.852 43 H 0.268 0.732 44 H -0.237 1.237 45 H -0.223 1.223 Dipole moment (debyes) X Y Z Total from point charges 5.542 -0.907 0.433 5.633 hybrid contribution 0.482 1.013 -0.010 1.122 sum 6.025 0.106 0.422 6.040 Atomic orbital electron populations 1.20714 0.82512 1.05459 1.05286 1.23319 0.94924 0.83036 0.96581 1.21284 0.94233 0.93622 1.17715 1.17281 0.85276 0.84238 0.75530 1.90752 1.17950 1.84525 1.52415 1.45699 1.10004 1.05882 1.74355 1.21466 0.97395 0.79001 1.01848 1.21345 0.95199 0.94882 0.99185 0.89284 1.21593 0.96754 0.99839 0.96832 1.21455 0.97135 0.93690 1.01983 1.21180 0.95697 0.95318 0.98663 0.92036 1.22313 0.94016 0.98771 0.85076 1.86433 1.46312 1.71732 1.35977 1.21472 0.96432 1.00048 0.96504 1.21485 0.97746 0.92882 1.02718 1.22848 0.96541 0.93243 1.03233 1.21865 0.82278 0.95517 1.08710 1.23950 0.91418 1.07096 0.91987 1.86409 1.47111 1.67320 1.36280 0.94380 0.82913 0.75702 0.75807 1.83699 1.17484 1.35837 1.72103 0.88148 0.88888 0.87984 0.75065 0.91812 0.92282 0.91374 0.92672 0.91299 0.92598 0.93042 0.92691 0.75558 0.91030 0.90773 0.90704 0.91933 0.79626 0.85216 0.73227 1.23742 1.22316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.45 9.89 71.24 0.70 0.26 16 2 C 0.07 0.69 7.37 25.26 0.19 0.88 16 3 C -0.26 -2.21 6.31 -18.99 -0.12 -2.33 16 4 C 0.59 5.47 7.81 86.65 0.68 6.15 16 5 O -0.57 -8.91 14.85 -4.08 -0.06 -8.97 16 6 N -0.71 -1.72 5.28 -466.42 -2.46 -4.19 16 7 C 0.13 0.17 5.06 86.38 0.44 0.61 16 8 C -0.09 0.27 2.22 -10.80 -0.02 0.25 16 9 H 0.09 -0.41 8.14 -2.39 -0.02 -0.43 16 10 C -0.11 0.24 5.08 30.59 0.16 0.40 16 11 C -0.11 0.14 5.10 30.60 0.16 0.29 16 12 C -0.09 0.11 2.43 -10.79 -0.03 0.08 16 13 H 0.06 0.13 8.14 -2.39 -0.02 0.11 16 14 C 0.08 -0.14 6.43 71.98 0.46 0.32 16 15 O -0.60 -0.65 13.20 -148.98 -1.97 -2.61 16 16 C -0.11 0.42 5.21 30.61 0.16 0.58 16 17 C -0.11 0.36 5.21 30.61 0.16 0.52 16 18 C -0.14 -0.55 10.48 23.65 0.25 -0.30 16 19 C -0.04 -0.20 6.22 24.76 0.15 -0.05 16 20 C -0.04 0.09 2.96 71.24 0.21 0.30 16 21 O -0.56 1.87 12.86 -148.98 -1.92 -0.05 16 22 Si 0.81 -1.56 32.09 68.60 2.20 0.64 16 23 O -0.19 -1.91 8.90 4.48 0.04 -1.87 16 24 H 0.10 0.31 8.14 -2.38 -0.02 0.30 16 25 H 0.09 0.19 8.14 -2.39 -0.02 0.17 16 26 H 0.10 0.78 6.49 -2.39 -0.02 0.76 16 27 H 0.41 -1.05 6.82 -92.71 -0.63 -1.69 16 28 H 0.06 0.20 8.14 -2.39 -0.02 0.18 16 29 H 0.06 0.24 8.14 -2.39 -0.02 0.22 16 30 H 0.07 -0.23 7.18 -2.39 -0.02 -0.25 16 31 H 0.05 0.03 8.14 -2.39 -0.02 0.01 16 32 H 0.07 -0.19 8.14 -2.39 -0.02 -0.21 16 33 H 0.06 0.12 7.82 -2.39 -0.02 0.10 16 34 H 0.05 -0.17 8.14 -2.39 -0.02 -0.19 16 35 H 0.05 -0.22 8.14 -2.39 -0.02 -0.24 16 36 H 0.39 -2.82 9.12 -74.06 -0.68 -3.49 16 37 H 0.07 -0.32 8.14 -2.39 -0.02 -0.34 16 38 H 0.07 -0.38 8.14 -2.39 -0.02 -0.40 16 39 H 0.07 -0.29 8.14 -2.39 -0.02 -0.31 16 40 H 0.06 -0.11 8.14 -2.39 -0.02 -0.13 16 41 H 0.19 -0.51 7.74 -2.91 -0.02 -0.54 16 42 H 0.13 -1.20 7.96 -2.38 -0.02 -1.22 16 43 H 0.41 -6.16 8.74 -74.06 -0.65 -6.80 16 44 H -0.31 -2.46 7.11 99.48 0.71 -1.76 16 45 H -0.30 -1.48 7.11 99.48 0.71 -0.77 16 Total: 0.00 -24.48 365.03 -1.53 -26.01 By element: Atomic # 1 Polarization: -16.02 SS G_CDS: -0.91 Total: -16.92 kcal Atomic # 6 Polarization: 4.42 SS G_CDS: 3.54 Total: 7.96 kcal Atomic # 7 Polarization: -1.72 SS G_CDS: -2.46 Total: -4.19 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: -3.90 Total: -13.50 kcal Atomic # 14 Polarization: -1.56 SS G_CDS: 2.20 Total: 0.64 kcal Total: -24.48 -1.53 -26.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14939082_13308374.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.082 kcal (2) G-P(sol) polarization free energy of solvation -24.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds