Wall clock time and date at job start Sun Mar 7 2021 02:01:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37788 * 119.84685 * 2 1 4 4 C 1.39703 * 119.90467 * 180.02562 * 3 2 1 5 5 C 1.47541 * 120.19516 * 180.02562 * 4 3 2 6 6 O 1.21584 * 120.00490 * 179.97438 * 5 4 3 7 7 N 1.34778 * 119.99340 * 359.97438 * 5 4 3 8 8 C 1.46501 * 119.99600 * 179.97438 * 7 5 4 9 9 C 1.53004 * 109.47033 * 179.97438 * 8 7 5 10 10 H 1.09004 * 109.46867 * 55.00320 * 9 8 7 11 11 C 1.53001 * 109.47172 * 175.00188 * 9 8 7 12 12 C 1.53001 * 109.47189 * 180.02562 * 11 9 8 13 13 C 1.52998 * 109.46627 * 299.99797 * 12 11 9 14 14 H 1.09001 * 109.47317 * 299.99501 * 13 12 11 15 15 C 1.53005 * 109.46939 * 179.97438 * 13 12 11 16 16 O 1.42898 * 109.47286 * 174.99642 * 15 13 12 17 17 C 1.52994 * 109.47230 * 60.00458 * 13 12 11 18 18 C 1.52997 * 109.47436 * 295.00132 * 9 8 7 19 19 C 1.40139 * 119.62086 * 0.02562 * 4 3 2 20 20 O 1.35649 * 120.15526 * 179.97438 * 19 4 3 21 21 C 1.38710 * 119.69888 * 359.97438 * 19 4 3 22 22 C 1.50699 * 119.96174 * 179.97438 * 21 19 4 23 23 O 1.42892 * 109.47249 * 285.00262 * 22 21 19 24 24 Si 1.86298 * 109.47032 * 164.99648 * 22 21 19 25 25 C 1.38062 * 120.07933 * 0.25618 * 21 19 4 26 26 H 1.08994 * 109.47158 * 89.99774 * 1 2 3 27 27 H 1.08998 * 109.47197 * 210.00325 * 1 2 3 28 28 H 1.09005 * 109.46985 * 329.99856 * 1 2 3 29 29 H 1.07999 * 120.05332 * 359.97438 * 3 2 1 30 30 H 0.96997 * 120.00482 * 359.97438 * 7 5 4 31 31 H 1.08996 * 109.47359 * 300.00164 * 8 7 5 32 32 H 1.09006 * 109.47169 * 60.00617 * 8 7 5 33 33 H 1.09000 * 109.47251 * 300.00212 * 11 9 8 34 34 H 1.08994 * 109.47008 * 60.00228 * 11 9 8 35 35 H 1.09004 * 109.47304 * 59.99853 * 12 11 9 36 36 H 1.09000 * 109.47166 * 179.97438 * 12 11 9 37 37 H 1.08997 * 109.47093 * 295.00430 * 15 13 12 38 38 H 1.09004 * 109.46921 * 55.00205 * 15 13 12 39 39 H 0.96701 * 113.99632 * 179.97438 * 16 15 13 40 40 H 1.09001 * 109.48006 * 59.99797 * 17 13 12 41 41 H 1.09009 * 109.47387 * 179.97438 * 17 13 12 42 42 H 1.08994 * 109.47254 * 300.00084 * 18 9 8 43 43 H 1.09005 * 109.46794 * 60.00193 * 18 9 8 44 44 H 0.96707 * 113.99759 * 270.02022 * 20 19 4 45 45 H 1.09004 * 109.46453 * 45.00330 * 22 21 19 46 46 H 0.96703 * 114.00176 * 299.99748 * 23 22 21 47 47 H 1.48506 * 109.99834 * 58.68765 * 24 22 21 48 48 H 1.48502 * 110.00011 * 180.02562 * 24 22 21 49 49 H 1.08000 * 119.80335 * 179.72891 * 25 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1928 1.1951 0.0000 4 6 3.5898 1.1965 -0.0005 5 6 4.3306 2.4725 0.0000 6 8 5.5464 2.4697 0.0000 7 7 3.6594 3.6412 0.0005 8 6 4.3948 4.9083 0.0017 9 6 3.4033 6.0735 0.0014 10 1 2.7183 5.9679 0.8427 11 6 4.1671 7.3932 0.1283 12 6 3.1755 8.5584 0.1287 13 6 2.3813 8.5525 -1.1790 14 1 3.0660 8.6584 -2.0205 15 6 1.3893 9.7173 -1.1784 16 8 0.7302 9.7823 -2.4447 17 6 1.6175 7.2329 -1.3058 18 6 2.6095 6.0675 -1.3065 19 6 4.2837 -0.0210 -0.0016 20 8 5.6401 -0.0323 -0.0027 21 6 3.5771 -1.2147 -0.0016 22 6 4.3173 -2.5274 -0.0034 23 8 4.8535 -2.7702 -1.3054 24 14 3.1449 -3.9019 0.4518 25 6 2.1966 -1.2016 -0.0059 26 1 -0.3633 0.0000 -1.0276 27 1 -0.3633 -0.8899 0.5139 28 1 -0.3633 0.8900 0.5139 29 1 1.6512 2.1295 -0.0004 30 1 2.6894 3.6435 0.0002 31 1 5.0213 4.9640 0.8919 32 1 5.0219 4.9652 -0.8881 33 1 4.7327 7.3975 1.0601 34 1 4.8520 7.4988 -0.7130 35 1 2.4908 8.4525 0.9702 36 1 3.7197 9.4985 0.2195 37 1 0.6505 9.5650 -0.3916 38 1 1.9242 10.6500 -0.9990 39 1 0.0850 10.4992 -2.5159 40 1 0.9327 7.1270 -0.4644 41 1 1.0513 7.2289 -2.2373 42 1 3.2944 6.1731 -2.1477 43 1 2.0653 5.1274 -1.3968 44 1 6.0327 -0.0349 -0.8865 45 1 5.1295 -2.4874 0.7225 46 1 4.1857 -2.8183 -2.0032 47 1 2.0160 -3.9465 -0.5120 48 1 3.8629 -5.2018 0.4542 49 1 1.6510 -2.1336 -0.0103 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14939082_13422088.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:01:33 Heat of formation + Delta-G solvation = -154.117714 kcal Electronic energy + Delta-G solvation = -29469.957296 eV Core-core repulsion = 25362.642197 eV Total energy + Delta-G solvation = -4107.315098 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 336.182 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.70907 -40.52398 -39.63808 -38.00705 -37.79429 -37.54312 -35.68902 -33.45193 -33.10757 -32.22870 -31.81554 -28.29174 -27.65243 -26.78473 -25.48089 -24.23454 -23.63566 -22.09863 -21.70569 -21.34094 -20.77329 -19.57367 -18.38526 -18.24614 -18.06516 -17.36552 -16.91688 -16.59950 -16.41318 -16.08635 -15.97392 -15.92495 -15.62778 -15.26477 -15.04751 -14.93993 -14.83666 -14.62530 -14.51548 -14.24924 -13.95736 -13.65291 -13.51562 -13.33292 -13.20815 -13.09091 -12.90577 -12.65726 -12.55513 -12.21490 -12.16820 -11.98904 -11.77388 -11.66730 -11.51343 -11.25683 -11.16044 -10.89237 -10.85275 -10.48511 -10.20114 -9.98390 -9.52074 -5.01274 -0.32498 0.04716 1.21926 1.49922 1.79829 1.90543 2.14233 2.60058 3.14886 3.21597 3.33751 3.45906 3.51989 3.56668 3.62698 3.64332 3.67882 3.97794 4.04751 4.08610 4.10813 4.19612 4.27672 4.34070 4.37959 4.40945 4.46765 4.50807 4.54352 4.55405 4.56124 4.60728 4.69715 4.73330 4.79874 4.84968 4.91492 4.95380 4.98248 5.04878 5.10193 5.14206 5.17999 5.20485 5.30305 5.35200 5.40751 5.47614 5.57473 6.35245 6.48978 6.63515 6.79461 7.27665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.097 4.097 3 C -0.067 4.067 4 C -0.164 4.164 5 C 0.558 3.442 6 O -0.517 6.517 7 N -0.728 5.728 8 C 0.124 3.876 9 C -0.100 4.100 10 H 0.078 0.922 11 C -0.110 4.110 12 C -0.112 4.112 13 C -0.089 4.089 14 H 0.078 0.922 15 C 0.078 3.922 16 O -0.574 6.574 17 C -0.110 4.110 18 C -0.116 4.116 19 C 0.191 3.809 20 O -0.472 6.472 21 C -0.150 4.150 22 C -0.071 4.071 23 O -0.527 6.527 24 Si 0.693 3.307 25 C -0.082 4.082 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.130 0.870 30 H 0.398 0.602 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.045 0.955 38 H 0.045 0.955 39 H 0.380 0.620 40 H 0.060 0.940 41 H 0.071 0.929 42 H 0.066 0.934 43 H 0.061 0.939 44 H 0.399 0.601 45 H 0.123 0.877 46 H 0.374 0.626 47 H -0.258 1.258 48 H -0.254 1.254 49 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.075 2.542 1.264 7.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.097 4.097 3 C -0.086 4.086 4 C -0.167 4.167 5 C 0.345 3.655 6 O -0.393 6.393 7 N -0.381 5.381 8 C 0.001 3.999 9 C -0.118 4.118 10 H 0.096 0.904 11 C -0.148 4.148 12 C -0.150 4.150 13 C -0.107 4.107 14 H 0.096 0.904 15 C 0.000 4.000 16 O -0.379 6.379 17 C -0.147 4.147 18 C -0.153 4.153 19 C 0.144 3.856 20 O -0.283 6.283 21 C -0.151 4.151 22 C -0.180 4.180 23 O -0.333 6.333 24 Si 0.594 3.406 25 C -0.100 4.100 26 H 0.092 0.908 27 H 0.091 0.909 28 H 0.090 0.910 29 H 0.148 0.852 30 H 0.234 0.766 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.227 0.773 40 H 0.079 0.921 41 H 0.089 0.911 42 H 0.085 0.915 43 H 0.079 0.921 44 H 0.258 0.742 45 H 0.141 0.859 46 H 0.221 0.779 47 H -0.184 1.184 48 H -0.179 1.179 49 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -5.642 1.293 1.831 6.071 hybrid contribution -0.696 0.898 -1.482 1.867 sum -6.338 2.191 0.349 6.715 Atomic orbital electron populations 1.20836 0.90054 1.03562 1.02900 1.19783 0.96734 0.92266 1.00943 1.21123 0.92152 0.98260 0.97071 1.20401 0.93920 0.93530 1.08872 1.18023 0.87305 0.83323 0.76895 1.90841 1.12998 1.87297 1.48212 1.45925 1.10295 1.05665 1.76232 1.21443 0.94348 0.81391 1.02734 1.21446 0.97180 0.94242 0.98982 0.90370 1.21467 0.97693 0.92926 1.02721 1.21502 0.97946 0.98651 0.96895 1.21173 0.96624 0.94216 0.98696 0.90364 1.22247 0.94644 0.97844 0.85231 1.86473 1.59355 1.56963 1.35141 1.21523 0.97471 0.93264 1.02481 1.21636 0.98160 0.98376 0.97135 1.18221 0.83981 0.89669 0.93706 1.84682 1.14135 1.95861 1.33620 1.20617 0.93928 0.95707 1.04804 1.24978 1.05752 0.98920 0.88383 1.86641 1.36773 1.93522 1.16328 0.94822 0.78012 0.77471 0.90317 1.21174 0.92921 0.98546 0.97377 0.90752 0.90895 0.90994 0.85221 0.76648 0.91150 0.91196 0.91198 0.91311 0.91613 0.91440 0.93682 0.93664 0.77302 0.92132 0.91058 0.91509 0.92059 0.74222 0.85872 0.77907 1.18364 1.17922 0.84648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.39 10.00 36.01 0.36 0.75 16 2 C -0.10 0.12 5.87 -104.67 -0.61 -0.49 16 3 C -0.07 0.06 9.18 -39.20 -0.36 -0.30 16 4 C -0.16 -0.30 5.89 -104.84 -0.62 -0.92 16 5 C 0.56 1.81 7.76 -12.47 -0.10 1.71 16 6 O -0.52 -3.64 15.16 -16.59 -0.25 -3.89 16 7 N -0.73 -0.06 5.23 -61.34 -0.32 -0.38 16 8 C 0.12 -0.01 5.06 -4.04 -0.02 -0.03 16 9 C -0.10 0.19 2.22 -90.62 -0.20 -0.01 16 10 H 0.08 -0.18 8.14 -51.93 -0.42 -0.60 16 11 C -0.11 0.20 5.20 -26.73 -0.14 0.07 16 12 C -0.11 0.22 5.20 -26.73 -0.14 0.08 16 13 C -0.09 0.08 2.43 -90.62 -0.22 -0.14 16 14 H 0.08 0.02 8.14 -51.93 -0.42 -0.40 16 15 C 0.08 -0.08 6.43 37.16 0.24 0.16 16 16 O -0.57 -0.16 13.19 -35.23 -0.46 -0.62 16 17 C -0.11 0.12 5.10 -26.71 -0.14 -0.02 16 18 C -0.12 0.19 5.08 -26.71 -0.14 0.06 16 19 C 0.19 0.49 6.69 -38.69 -0.26 0.23 16 20 O -0.47 -1.84 10.91 -40.52 -0.44 -2.28 16 21 C -0.15 -0.10 5.27 -104.51 -0.55 -0.65 16 22 C -0.07 -0.03 2.38 36.01 0.09 0.06 16 23 O -0.53 -0.62 12.88 -35.23 -0.45 -1.08 16 24 Si 0.69 -0.74 30.25 -169.99 -5.14 -5.88 16 25 C -0.08 0.07 8.30 -39.53 -0.33 -0.26 16 26 H 0.07 -0.27 8.14 -51.93 -0.42 -0.70 16 27 H 0.07 -0.28 8.08 -51.93 -0.42 -0.70 16 28 H 0.07 -0.30 8.08 -51.93 -0.42 -0.72 16 29 H 0.13 -0.45 6.40 -52.49 -0.34 -0.78 16 30 H 0.40 -0.96 5.69 -40.82 -0.23 -1.19 16 31 H 0.07 0.07 8.14 -51.93 -0.42 -0.35 16 32 H 0.07 0.07 8.14 -51.93 -0.42 -0.35 16 33 H 0.07 -0.14 8.14 -51.93 -0.42 -0.56 16 34 H 0.07 -0.10 8.14 -51.93 -0.42 -0.52 16 35 H 0.07 -0.15 8.14 -51.93 -0.42 -0.57 16 36 H 0.07 -0.14 8.14 -51.93 -0.42 -0.57 16 37 H 0.04 -0.08 8.14 -51.93 -0.42 -0.50 16 38 H 0.05 -0.07 8.14 -51.93 -0.42 -0.50 16 39 H 0.38 -1.42 9.12 45.56 0.42 -1.00 16 40 H 0.06 -0.09 8.14 -51.93 -0.42 -0.51 16 41 H 0.07 0.03 7.82 -51.92 -0.41 -0.38 16 42 H 0.07 -0.04 8.14 -51.93 -0.42 -0.47 16 43 H 0.06 -0.14 7.18 -51.93 -0.37 -0.51 16 44 H 0.40 0.57 9.06 45.56 0.41 0.98 16 45 H 0.12 0.13 7.83 -51.93 -0.41 -0.28 16 46 H 0.37 -0.73 8.70 45.56 0.40 -0.33 16 47 H -0.26 0.02 6.67 56.52 0.38 0.40 16 48 H -0.25 -0.59 7.11 56.52 0.40 -0.19 16 49 H 0.14 -0.31 4.83 -52.49 -0.25 -0.57 16 LS Contribution 388.12 15.07 5.85 5.85 Total: 0.00 -9.16 388.12 -10.70 -19.86 By element: Atomic # 1 Polarization: -5.53 SS G_CDS: -6.34 Total: -11.87 kcal Atomic # 6 Polarization: 3.44 SS G_CDS: -3.13 Total: 0.31 kcal Atomic # 7 Polarization: -0.06 SS G_CDS: -0.32 Total: -0.38 kcal Atomic # 8 Polarization: -6.27 SS G_CDS: -1.61 Total: -7.88 kcal Atomic # 14 Polarization: -0.74 SS G_CDS: -5.14 Total: -5.88 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -9.16 -10.70 -19.86 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14939082_13422088.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.260 kcal (2) G-P(sol) polarization free energy of solvation -9.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds